Gene

KWMTBOMO07773  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000898

Annotation

PREDICTED:_splicing_factor_3A_subunit_2_[Bombyx_mori]

Location

Bomo_Chr13(+):6596593-6597714      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.716

CDS

ATGGATTTTCAAAATCGCCCTGGCGGTAAAACTGGTGGAGGAGGTGTAGCGTCATGGTCGGAAAGTAACAGAGACCGGCGGGAGAGATTACGACAGCTTGCACTAGAAACAATAGATTTAAACAAAGATCCATATTTTATGAAAAATCATTTAGGGTCCTATGAATGTAAACTTTGTTTAACCCTGCATAACAATGAGGGAAGTTATTTGGCTCACACGCAAGGGAAGAAGCATCAAGCCAATTTGGCACGTAGAGCTGCAAAGGAAGCCAAAGAAGCGCCTCAACAGCTTGCCCCGGAAAAACCTAGAATTGAACCTAAGAAATTTGTGAAGATTGGTAGACCTGGTTACAGAGTAACAAAACAGAAAGATCCTGAAACTGGACAGCAGAGCTTGCTCTTCCAAGTAGATTATCCAGAGATTGCAGAGGGTGTTATACCTAGACATAGATTTATGTCTGCTTATGAACAGAAGATTGAGCCTCCAGACCGCAGATGGCAGTATTTGTTATTTGCAGCAGAGCCTTATGAAACTATTGCATTTAAAGTCCCTAGCAGAGAAGTTGAAAAGCATGATTCAAAATTCTGGACTCATTGGAACAAGGACACAAAGCAGTTCTTTTTGCAGTTTGCATTTAAGATGGATCAGTTACGCATGCCTCCCCCCCATCCCAAAATGTGGGAGGGTCATAGCATGAGGTTGCCTCCACCTCCTGGAGCACCGATGTTGGGAGTACCACCGCCACCACCATTATTACCAGTGCCCCCACCACCACCCTCTATGTAA

Protein

MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKEAPQQLAPEKPRIEPKKFVKIGRPGYRVTKQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETIAFKVPSREVEKHDSKFWTHWNKDTKQFFLQFAFKMDQLRMPPPHPKMWEGHSMRLPPPPGAPMLGVPPPPPLLPVPPPPPSM

Uniprot

A0A1E1WFD6   S4PHJ6   A0A0L7KP97   A0A194PJF2   A0A194RHC6   A0A3S2PDP5   + More
A0A2A4JGA2   A0A0A9YEM3   A0A212FI02   A0A2R7VT21   A0A0P4VHH1   T1I7P3   A0A224XLJ9   A0A0V0GAA7   A0A069DQT2   A0A0L0CUC3   A0A336LM35   A0A1A9ZS70   A0A1L8EGY9   A0A1A9XDC7   A0A1B0BPB7   D3TMM7   A0A1I8NVI2   A0A336L8D8   A0A1A9X112   A0A1A9UQI0   A0A034VYB9   T1PGS2   A0A1B6GS13   A0A0A1WKM5   W8BQM1   A0A0K8VU76   A0A1J1IA56   T1JJG7   A0A1W4UVP6   A0A2R5LBW2   A0A3B0JP54   E2C0J2   B3M9C3   B4L0U2   A0A293LIK1   A0A0J7KFL1   Q2LYX0   B4H011   E2AVG6   B4ML36   A0A195FJ60   F4W6B0   A0A151WHQ9   A0A151IER8   A0A0K8TKY6   Q9VU15   B4PGV3   B4HG67   B3NCV2   B4QRS2   Q8I173   A0A195DMG3   A0A195AW18   A0A158P225   A0A1W4XH04   E9IV49   A0A0L7RDH6   A0A2A3EK41   A0A088AIB1   A0A310S8R3   E2C829   A0A0T6AV46   A0A026VXM1   A0A3S3P8N3   J3JY54   A0A183IXN7   B4IZM4   A0A2P8YEZ9   A0A232EG75   B7P952   V5HCS0   A0A067R2A1   K7J2Y0   A0A1Z5L8E7   A0A023FXZ9   G3MP46   A0A023GGT0   A0A2J7Q684   A0A1E1X4Z2   A0A023FK95   A0A1Q3F664   A0A077Z0V8   D2A323   A0A1Y1LZ81   A0A3P9JJ96   Q4RV48   H3DCY8   B0W7X5   A0A3S2M7U5   A0A224Z754   A0A131Z4B9   A0A131XLK1   A0A182QMG3   A0A182VNH0  

Pubmed

23622113    26227816    26354079    25401762    26823975    22118469    + More
27129103    26334808    26108605    20353571    25348373    25315136    25830018    24495485    20798317    17994087    15632085    21719571    26369729    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    22936249    18057021    21347285    21282665    24508170    30249741    22516182    23537049    29403074    28648823    25765539    24845553    20075255    28528879    22216098    28503490    18362917    19820115    28004739    17554307    15496914    28797301    26830274    28049606   

EMBL

GDQN01005417    JAT85637.1    GAIX01003252    JAA89308.1    JTDY01007538    KOB65128.1    + More
KQ459606    KPI91215.1    KQ460205    KPJ16844.1    RSAL01000084    RVE48411.1    NWSH01001481    PCG71115.1    GBHO01013010    GBRD01004396    GDHC01020245    GDHC01006703    JAG30594.1    JAG61425.1    JAP98383.1    JAQ11926.1    AGBW02008449    OWR53361.1    KK854069    PTY10652.1    GDKW01002678    JAI53917.1    ACPB03000177    GFTR01004462    JAW11964.1    GECL01001959    JAP04165.1    GBGD01002486    JAC86403.1    JRES01000005    KNC34964.1    UFQS01000052    UFQT01000052    SSW98660.1    SSX19046.1    GFDG01000861    JAV17938.1    JXJN01017879    CCAG010002320    EZ422679    ADD18955.1    UFQS01001941    UFQT01001941    SSX12745.1    SSX32187.1    GAKP01012087    JAC46865.1    KA647982    AFP62611.1    GECZ01004570    JAS65199.1    GBXI01015071    JAC99220.1    GAMC01003015    GAMC01003014    JAC03541.1    GDHF01009877    JAI42437.1    CVRI01000046    CRK97099.1    JH431165    GGLE01002888    MBY07014.1    OUUW01000002    SPP77290.1    GL451799    EFN78538.1    CH902618    EDV41136.1    CH933809    EDW19192.2    GFWV01008588    MAA33317.1    LBMM01008210    KMQ89054.1    CH379069    EAL29739.1    CH479199    EDW29588.1    GL443111    EFN62576.1    CH963847    EDW73094.1    KQ981523    KYN40406.1    GL887707    EGI70245.1    KQ983112    KYQ47348.1    KQ977858    KYM99305.1    GDAI01002802    JAI14801.1    AE014296    AY118970    AAF49876.1    AAM50830.1    CM000159    EDW94342.1    CH480815    EDW41313.1    CH954178    EDV51608.1    CM000363    CM002912    EDX10286.1    KMY99305.1    AY190958    CH940647    AAO01098.1    EDW70804.1    KQ980724    KYN14073.1    KQ976731    KYM76252.1    ADTU01006971    GL766116    EFZ15572.1    KQ414614    KOC68903.1    KZ288222    PBC32068.1    KQ768821    OAD53058.1    GL453532    EFN75902.1    LJIG01022742    KRT78952.1    KK107670    QOIP01000010    EZA48196.1    RLU17537.1    NCKU01003388    NCKU01000545    NCKU01000544    RWS07618.1    RWS15096.1    RWS15108.1    BT128178    KB632375    AEE63139.1    ERL93994.1    UZAM01011542    VDP16844.1    CH916366    EDV97799.1    PYGN01000650    PSN42832.1    NNAY01004862    OXU17328.1    ABJB010332570    ABJB010334271    ABJB010907402    DS661587    EEC03124.1    GANP01011606    GEFM01003807    JAB72862.1    JAP71989.1    KK852761    KDR17024.1    GFJQ02003308    JAW03662.1    GBBL01001740    JAC25580.1    JO843647    AEO35264.1    GBBM01002222    JAC33196.1    NEVH01017535    PNF24094.1    GFAC01004890    JAT94298.1    GBBK01003419    JAC21063.1    GFDL01012026    JAV23019.1    HG805850    CDW53363.1    KQ971338    EFA01964.1    GEZM01046888    JAV76976.1    CAAE01014992    CAG07734.1    DS231856    EDS38437.1    CM012453    RVE61806.1    GFPF01012025    MAA23171.1    GEDV01002308    JAP86249.1    GEFH01000622    JAP67959.1    AXCN02001143   

Proteomes

UP000037510    UP000053268    UP000053240    UP000283053    UP000218220    UP000007151    + More
UP000015103    UP000037069    UP000092445    UP000092443    UP000092460    UP000092444    UP000095300    UP000091820    UP000078200    UP000095301    UP000183832    UP000192221    UP000268350    UP000008237    UP000007801    UP000009192    UP000036403    UP000001819    UP000008744    UP000000311    UP000007798    UP000078541    UP000007755    UP000075809    UP000078542    UP000000803    UP000002282    UP000001292    UP000008711    UP000000304    UP000008792    UP000078492    UP000078540    UP000005205    UP000192223    UP000053825    UP000242457    UP000005203    UP000053097    UP000279307    UP000285301    UP000030742    UP000050793    UP000001070    UP000245037    UP000215335    UP000001555    UP000027135    UP000002358    UP000235965    UP000030665    UP000007266    UP000265200    UP000007303    UP000002320    UP000075886    UP000075903   

PRIDE

Q9VU15   

Pfam

PF16835   SF3A2        + More
PF01655   Ribosomal_L32e

Interpro

IPR003604   Matrin/U1-like-C_Znf_C2H2        + More
IPR000690   Matrin/U1-C_Znf_C2H2       
IPR031781   SF3A2_dom       
IPR036236   Znf_C2H2_sf       
IPR018263   Ribosomal_L32e_CS       
IPR036351   Ribosomal_L32e_sf       
IPR001515   Ribosomal_L32e       

SUPFAM

SSF57667   SSF57667        + More
SSF52042   SSF52042       

CDD

cd00513  Ribosomal_L32_L32e

ProteinModelPortal

A0A1E1WFD6   S4PHJ6   A0A0L7KP97   A0A194PJF2   A0A194RHC6   A0A3S2PDP5   + More
A0A2A4JGA2   A0A0A9YEM3   A0A212FI02   A0A2R7VT21   A0A0P4VHH1   T1I7P3   A0A224XLJ9   A0A0V0GAA7   A0A069DQT2   A0A0L0CUC3   A0A336LM35   A0A1A9ZS70   A0A1L8EGY9   A0A1A9XDC7   A0A1B0BPB7   D3TMM7   A0A1I8NVI2   A0A336L8D8   A0A1A9X112   A0A1A9UQI0   A0A034VYB9   T1PGS2   A0A1B6GS13   A0A0A1WKM5   W8BQM1   A0A0K8VU76   A0A1J1IA56   T1JJG7   A0A1W4UVP6   A0A2R5LBW2   A0A3B0JP54   E2C0J2   B3M9C3   B4L0U2   A0A293LIK1   A0A0J7KFL1   Q2LYX0   B4H011   E2AVG6   B4ML36   A0A195FJ60   F4W6B0   A0A151WHQ9   A0A151IER8   A0A0K8TKY6   Q9VU15   B4PGV3   B4HG67   B3NCV2   B4QRS2   Q8I173   A0A195DMG3   A0A195AW18   A0A158P225   A0A1W4XH04   E9IV49   A0A0L7RDH6   A0A2A3EK41   A0A088AIB1   A0A310S8R3   E2C829   A0A0T6AV46   A0A026VXM1   A0A3S3P8N3   J3JY54   A0A183IXN7   B4IZM4   A0A2P8YEZ9   A0A232EG75   B7P952   V5HCS0   A0A067R2A1   K7J2Y0   A0A1Z5L8E7   A0A023FXZ9   G3MP46   A0A023GGT0   A0A2J7Q684   A0A1E1X4Z2   A0A023FK95   A0A1Q3F664   A0A077Z0V8   D2A323   A0A1Y1LZ81   A0A3P9JJ96   Q4RV48   H3DCY8   B0W7X5   A0A3S2M7U5   A0A224Z754   A0A131Z4B9   A0A131XLK1   A0A182QMG3   A0A182VNH0  

PDB

6QX9     E-value=3.7877e-85,     Score=800

KEGG

101738577    K12826 splicing factor 3A subunit 2 | (RefSeq) splicing factor 3A subunit 2

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005634   GO:0008270   GO:0003676   GO:0046872   GO:0005840   GO:0006412   GO:0003735   GO:0010628   GO:0071011   GO:0005686   GO:0000398   GO:0003723   GO:0071013   GO:0071004   GO:0000245   GO:0004890   GO:0005216   GO:0006811   GO:0016021   GO:0022891   GO:0003707   GO:0051537  

Subcellular location

Nucleus  

Length:

261

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04202

outside

1  -  261

 

 

Pi

125.191638

Theta

183.787053

Tajima's D

-1.011289

CLR

336.175083

CSRT

0.131443427828609

Interpretation

Uncertain