Gene

KWMTBOMO07760  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001252

Annotation

PREDICTED:_39S_ribosomal_protein_L28?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr13(-):6375456-6379275      View in EpiBrowser

Full name

39S ribosomal protein L28, mitochondrial      

Location in the cell

Mitochondrial   Reliability : 2.237

CDS

ATGGCATCCTCTCGTTTACAGGTAACTGCGCGTCAGTTGTCGAAAACATTTAAGAAGAAAGGACGATTTGAAATTGGGATTGCGTCAGAGCTTCCACCTGCTTATAAAAAATTTTGGCGTGAGTGGAAGGTACTGAAGCCAGCAGCTGTACATTTCGTTCCTCAAGAAGGGAAGTGGAAACGCGACGAATTGACTGGTGAAACTTATCCGATACAAAATATTCCTATTCCTCTTAAATTCCCCGCTGAAATCAATGAGGGGATATGGGGAGGAGAAGCTGTGGTTAAAGGTTTCCAAAAGCGTGATGATAGACGACGCAGGGTACCTCACTACTGGGTGCCAGTACTGAAGAGAACTGTAGTAAGATCTGAAGTTCTCAATACTCATCTCTCAGTAACTGTAACGGATCGAACTATTAGTCTCATTAATGATCACTATGGGTTTGACCATTATCTACTGAAGACTCCTGCTTGTGATTTAGTCTCTGTACTAGCATTGAAACTGAAAAAACAAATACTAACTGAATTAATGAATGGATGCCCTAGACACGCTTATGACCCTAAAAAGCAGATGGAAATCTATGAGGAGTACAAAACATATTTATCATCATATACACCTGAAGAAATTGAATGGAATTGA

Protein

MASSRLQVTARQLSKTFKKKGRFEIGIASELPPAYKKFWREWKVLKPAAVHFVPQEGKWKRDELTGETYPIQNIPIPLKFPAEINEGIWGGEAVVKGFQKRDDRRRRVPHYWVPVLKRTVVRSEVLNTHLSVTVTDRTISLINDHYGFDHYLLKTPACDLVSVLALKLKKQILTELMNGCPRHAYDPKKQMEIYEEYKTYLSSYTPEEIEWN

Subunit

Component of the mitochondrial ribosome large subunit (39S) which comprises a 16S rRNA and about 50 distinct proteins.

Similarity

Belongs to the bacterial ribosomal protein bL28 family.

Keywords

Complete proteome   Mitochondrion   Reference proteome   Ribonucleoprotein   Ribosomal protein   Transit peptide  

Feature

chain  39S ribosomal protein L28, mitochondrial

Uniprot

H9IVH2   A0A0L7LMP6   I4DJP7   I4DR34   A0A212FHZ6   A0A2A4J6F8   + More
A0A3S2M2D6   A0A2H1W174   A0A194PD86   A0A2W1BL91   A0A1L8EGX9   T1PDX0   A0A1I8MT66   U5EX92   A0A1A9WW99   A0A0T6BHE9   A0A0L0BT61   A0A182PLQ9   D3TME2   A0A2M4CZE9   A0A087Z081   A0A182W6G2   A0A182XFY4   A0A182L0K5   A0A182IC71   A0A182RDQ8   A0A2M3Z8C1   A0A1S4GY32   A0A2M4BW49   A0A182IN84   A0A182MP95   A0A182YDU9   A0A0K8TSZ8   Q7PNE7   A0A1A9VMI1   A0A182TV32   A0A182F3F5   A0A182VLB9   A0A084WH80   D2A0U6   A0A182JT47   Q1HQI0   A0A182NTZ2   B5M0T0   A0A1A9Y3H9   A0A1B0ASF6   A0A1B0AEL3   A0A182G4P8   W5JS50   A0A2M4CYV3   A0A182Q5S7   A0A2M4AAE5   B0W4G9   A0A0M5IYD1   A0A1Q3FFN1   B4N0K8   J3JXU6   W8B9Q0   B4LUA7   B4KGX7   A0A034VU90   A0A0K8W9U4   N6UCH1   A0A1B0C8X2   Q29L18   B4GSH3   A0A3B0JHQ4   B4JB42   A0A336LZ28   B4Q359   B4I1A0   A0A1L8DS67   A8E702   Q9VMX0   A0A0J9TFS7   B3N4D2   A0A1J1IPX5   A0A1W4UIC7   A0A1W4X6M7   A0A1Y1MQV4   B3MVL8   B4NW93   A0A088AFV4   A0A195FHK9   A0A2A3EGI6   E9IIZ6   A0A067R9V1   A0A310SAL0   A0A158NWZ6   A0A195BBW7   A0A2J7RFS8   A0A151J9I2   A0A154NWP9   A0A195D3E0   A0A2S2PUG5   A0A232FJX3   A0A151WU10   K7J2M3   A0A182SJC8   J9K329  

Pubmed

19121390    26227816    22651552    22118469    26354079    28756777    + More
25315136    26108605    20353571    20920257    20966253    12364791    25244985    26369729    24438588    18362917    19820115    17204158    17510324    19166301    26483478    17994087    22516182    24495485    25348373    23537049    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12537569    22936249    28004739    17550304    21282665    24845553    21347285    28648823    20075255   

EMBL

BABH01001059    BABH01001060    JTDY01000551    KOB76707.1    AK401515    BAM18137.1    + More
AK404920    BAM20374.1    AGBW02008449    OWR53348.1    NWSH01003070    PCG67002.1    RSAL01000059    RVE49673.1    ODYU01005720    SOQ46850.1    KQ459606    KPI91202.1    KZ149987    PZC75658.1    GFDG01000817    JAV17982.1    KA646894    AFP61523.1    GANO01001063    JAB58808.1    LJIG01000164    KRT86776.1    JRES01001399    KNC23183.1    CCAG010021468    EZ422594    ADD18870.1    GGFL01006522    MBW70700.1    APCN01000778    GGFM01003989    MBW24740.1    AAAB01008964    GGFJ01008093    MBW57234.1    AXCM01000782    GDAI01000548    JAI17055.1    EAA12310.5    ATLV01023795    KE525346    KFB49574.1    KQ971338    EFA02562.2    DQ440464    CH477519    ABF18497.1    EAT39614.1    EU930266    ACH56894.1    JXJN01002751    JXUM01144169    KQ569733    KXJ68532.1    ADMH02000622    ETN65579.1    GGFL01006336    MBW70514.1    AXCN02000807    GGFK01004391    MBW37712.1    DS231837    EDS33552.1    CP012523    ALC38198.1    GFDL01008687    JAV26358.1    CH963920    EDW77621.1    BT128067    AEE63028.1    GAMC01008616    GAMC01008615    JAB97940.1    CH940649    EDW64094.1    CH933807    EDW11177.1    GAKP01013552    JAC45400.1    GDHF01004515    JAI47799.1    APGK01029087    KB740724    KB632278    ENN79360.1    ERL91252.1    AJWK01001565    CH379061    EAL33006.2    CH479189    EDW25332.1    OUUW01000006    SPP81944.1    CH916368    EDW03934.1    UFQS01000219    UFQT01000219    SSX01533.1    SSX21913.1    CM000361    EDX03775.1    CH480820    EDW54307.1    GFDF01004768    JAV09316.1    BT030944    AE014134    ABV82326.1    AGB92599.1    AY075494    CM002910    KMY88190.1    CH954177    EDV57802.1    CVRI01000054    CRL00553.1    GEZM01026945    JAV86885.1    CH902624    EDV33283.1    CM000157    EDW88410.1    KQ981523    KYN40180.1    KZ288254    PBC30875.1    GL763562    EFZ19445.1    KK852606    KDR20362.1    KQ777347    OAD52111.1    ADTU01028910    KQ976530    KYM81689.1    NEVH01004410    PNF39689.1    KQ979404    KYN21671.1    KQ434775    KZC04057.1    KQ976885    KYN07418.1    GGMR01020424    MBY33043.1    NNAY01000114    OXU30840.1    KQ982753    KYQ51257.1    ABLF02032969   

Proteomes

UP000005204    UP000037510    UP000007151    UP000218220    UP000283053    UP000053268    + More
UP000095301    UP000091820    UP000037069    UP000075885    UP000092444    UP000075920    UP000076407    UP000075882    UP000075840    UP000075900    UP000075880    UP000075883    UP000076408    UP000007062    UP000078200    UP000075902    UP000069272    UP000075903    UP000030765    UP000007266    UP000075881    UP000008820    UP000075884    UP000092443    UP000092460    UP000092445    UP000069940    UP000249989    UP000000673    UP000075886    UP000002320    UP000092553    UP000007798    UP000008792    UP000009192    UP000019118    UP000030742    UP000092461    UP000001819    UP000008744    UP000268350    UP000001070    UP000000304    UP000001292    UP000000803    UP000008711    UP000183832    UP000192221    UP000192223    UP000007801    UP000002282    UP000005203    UP000078541    UP000242457    UP000027135    UP000005205    UP000078540    UP000235965    UP000078492    UP000076502    UP000078542    UP000215335    UP000075809    UP000002358    UP000075901    UP000007819   

PRIDE

H9IVH2    A8E702    Q9VMX0   

Interpro

IPR026569   Ribo_L28/L24        + More
IPR037147   Ribo_L28/L24_sf       
IPR034704   L28p-like       

SUPFAM

SSF143800   SSF143800       

Gene 3D

2.30.170.40    

ProteinModelPortal

H9IVH2   A0A0L7LMP6   I4DJP7   I4DR34   A0A212FHZ6   A0A2A4J6F8   + More
A0A3S2M2D6   A0A2H1W174   A0A194PD86   A0A2W1BL91   A0A1L8EGX9   T1PDX0   A0A1I8MT66   U5EX92   A0A1A9WW99   A0A0T6BHE9   A0A0L0BT61   A0A182PLQ9   D3TME2   A0A2M4CZE9   A0A087Z081   A0A182W6G2   A0A182XFY4   A0A182L0K5   A0A182IC71   A0A182RDQ8   A0A2M3Z8C1   A0A1S4GY32   A0A2M4BW49   A0A182IN84   A0A182MP95   A0A182YDU9   A0A0K8TSZ8   Q7PNE7   A0A1A9VMI1   A0A182TV32   A0A182F3F5   A0A182VLB9   A0A084WH80   D2A0U6   A0A182JT47   Q1HQI0   A0A182NTZ2   B5M0T0   A0A1A9Y3H9   A0A1B0ASF6   A0A1B0AEL3   A0A182G4P8   W5JS50   A0A2M4CYV3   A0A182Q5S7   A0A2M4AAE5   B0W4G9   A0A0M5IYD1   A0A1Q3FFN1   B4N0K8   J3JXU6   W8B9Q0   B4LUA7   B4KGX7   A0A034VU90   A0A0K8W9U4   N6UCH1   A0A1B0C8X2   Q29L18   B4GSH3   A0A3B0JHQ4   B4JB42   A0A336LZ28   B4Q359   B4I1A0   A0A1L8DS67   A8E702   Q9VMX0   A0A0J9TFS7   B3N4D2   A0A1J1IPX5   A0A1W4UIC7   A0A1W4X6M7   A0A1Y1MQV4   B3MVL8   B4NW93   A0A088AFV4   A0A195FHK9   A0A2A3EGI6   E9IIZ6   A0A067R9V1   A0A310SAL0   A0A158NWZ6   A0A195BBW7   A0A2J7RFS8   A0A151J9I2   A0A154NWP9   A0A195D3E0   A0A2S2PUG5   A0A232FJX3   A0A151WU10   K7J2M3   A0A182SJC8   J9K329  

PDB

5OOM     E-value=1.2848e-25,     Score=285

KEGG

101738983    K02902 large subunit ribosomal protein L28 | (RefSeq) 39S ribosomal protein L28, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0005840   GO:0005762   GO:0032543  

PANTHER

PTHR13528  

Subcellular location

Mitochondrion  

Length:

212

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0026

Exp number, first 60 AAs:

0.00049

Total prob of N-in:

0.11168

outside

1  -  212

 

 

Pi

229.197178

Theta

182.465312

Tajima's D

0.712759

CLR

0.132977

CSRT

0.577371131443428

Interpretation

Uncertain