Gene

KWMTBOMO07752

Annotation

ionotropic_GABA_receptor_subunit_LCCH3-type_[Bombyx_mori]

Location

Bomo_Chr13(-):6237997-6240065      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.838 Nuclear   Reliability : 1.139

CDS

ATGGGACGGGTTTCTCCGCTGTTAGGATTACGGACGAAGCCATTGCCGTCGACTAGCGGGGGTCCGCCCTCACTGAGACTACAACGCGACAACACACTACGTTACAGGACGAGACCAAATTCTAGGAATTCGAGAAATGCGGCTAATAGCAAGCCTAAGATGATGCACGCGCTACGTCGCGGCGCTACTGTCATCAAAGCCTCGATGCCGAAGATAAGGGACGTAAATGTCATAGATACTTATTCCCGGGTCGTCTTTCCCGTGTGCTTCCTCATCTTTAACGCTGTCTATTGGGTCTTCTATATTTTCGATTAA

Protein

MGRVSPLLGLRTKPLPSTSGGPPSLRLQRDNTLRYRTRPNSRNSRNAANSKPKMMHALRRGATVIKASMPKIRDVNVIDTYSRVVFPVCFLIFNAVYWVFYIFD

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.

Uniprot

A0A0U5AGK6   E0X9H6   A0A2W1BV77   A0A2A4JWK9   A0A2H1VBG3   A0A0L7KU52   + More
A0A3G1J4Z3   A0A3S2L9G8   A0A194PD82   A0A194RW19   A0A212FHX4   F4WHV8   A0A195C9H9   A0A151IUQ8   A0A158NBY7   A0A195BFV1   A0A3L8DUE8   A0A026VVK9   E2BUR7   E1ZY65   A0A1B6LVT6   B5DTY2  

Pubmed

20924418    28756777    26227816    26354079    22118469    21719571    + More
21347285    30249741    24508170    20798317    15632085    17994087   

EMBL

AB278156    BAT57341.1    GQ890660    ADM88005.1    KZ149987    PZC75663.1    + More
NWSH01000440    PCG76407.1    ODYU01001638    SOQ38141.1    JTDY01005820    KOB66581.1    KX856968    ASY91960.1    RSAL01000392    RVE41992.1    KQ459606    KPI91197.1    KQ459700    KPJ20386.1    AGBW02008449    OWR53343.1    GL888170    EGI66187.1    KQ978068    KYM97477.1    KQ980949    KYN11214.1    ADTU01011489    ADTU01011490    KQ976500    KYM83084.1    QOIP01000004    RLU23529.1    KK107785    EZA47792.1    GL450743    EFN80572.1    GL435171    EFN73914.1    GEBQ01012200    JAT27777.1    CH476157    EDY71425.2   

Proteomes

UP000218220    UP000037510    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000007755    UP000078542    UP000078492    UP000005205    UP000078540    UP000279307    UP000053097    UP000008237    UP000000311    UP000001819   

PRIDE

E0X9H6   

Pfam

PF02932   Neur_chan_memb        + More
PF02931   Neur_chan_LBD
PF00057   Ldl_recept_a
PF00058   Ldl_recept_b
PF07645   EGF_CA

Interpro

IPR036719   Neuro-gated_channel_TM_sf        + More
IPR002289   GABAAb_rcpt       
IPR036734   Neur_chan_lig-bd_sf       
IPR006029   Neurotrans-gated_channel_TM       
IPR006028   GABAA/Glycine_rcpt       
IPR006202   Neur_chan_lig-bd       
IPR006201   Neur_channel       
IPR018000   Neurotransmitter_ion_chnl_CS       
IPR001390   GABAAa_rcpt       
IPR001881   EGF-like_Ca-bd_dom       
IPR000033   LDLR_classB_rpt       
IPR002172   LDrepeatLR_classA_rpt       
IPR036055   LDL_receptor-like_sf       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR018097   EGF_Ca-bd_CS       
IPR013032   EGF-like_CS       
IPR011042   6-blade_b-propeller_TolB-like       
IPR000742   EGF-like_dom       
IPR023415   LDLR_class-A_CS       

SUPFAM

SSF63712   SSF63712        + More
SSF90112   SSF90112       
SSF57184   SSF57184       
SSF57424   SSF57424       

Gene 3D

2.70.170.10     2.120.10.30     4.10.400.10    

CDD

cd00112  LDLa

ProteinModelPortal

A0A0U5AGK6   E0X9H6   A0A2W1BV77   A0A2A4JWK9   A0A2H1VBG3   A0A0L7KU52   + More
A0A3G1J4Z3   A0A3S2L9G8   A0A194PD82   A0A194RW19   A0A212FHX4   F4WHV8   A0A195C9H9   A0A151IUQ8   A0A158NBY7   A0A195BFV1   A0A3L8DUE8   A0A026VVK9   E2BUR7   E1ZY65   A0A1B6LVT6   B5DTY2  

PDB

6I53     E-value=2.98358e-08,     Score=132

KEGG

100500929    K05181 gamma-aminobutyric acid receptor subunit beta | (RefSeq) lcch3; ligand-gated chloride channel

GO

GO:0004890   GO:0005886   GO:0016021   GO:0005230   GO:0006811   GO:0004888   GO:0005509   GO:0060828   GO:0030509   GO:0048513   GO:0005216   GO:0016020   GO:0006810   GO:0006412   GO:0016301   GO:0016573   GO:0008270   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR18945  

Length:

104

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.61377

Exp number, first 60 AAs:

0.00095

Total prob of N-in:

0.60279

inside

1  -  80

TMhelix

81  -  103

outside

104  -  104

 

 

Pi

219.283

Theta

169.1301

Tajima's D

0.925573

CLR

0.349924

CSRT

0.64096795160242

Interpretation

Uncertain