Gene

KWMTBOMO07748  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001258

Annotation

PREDICTED:_synaptobrevin_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(-):6162058-6166775      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.83

CDS

ATGCCTATATTATTCAGTATCGTGGCTAGAGGCACTGTAGTCCTCGCTAAATATGCAACTTGTCAGGGTAATTTCACTGAAGTCGCAGAGCAGATTTTATCAAAGATTCCGCCCCACGACGATAAGTTGACATATTCTCACGGAAATTATCTATTCCATTACATAGCAGAGAACAAATTGGTTTATTTCTGCATCACTGACGATAAATTCCAACGTTCGAGAGCGTTCTTATTTCTTAATGAGATAAAAAGAAGATTCACTACAGCATTTGCTGACACCGCACAGACAGCAATACCTTACGCCATGAACAGTGAATTTGGTCGGGTTCTTGCCACTGAGATGAAACATTACAGTGAATCTCGAGACTTGGACAACATTTCAAGAGTTCATGGAGAATTAGATGAATTAAAAAATATAATGGTTAAAAACATTGATAACATGGCAATGCGTGGAGAAAAGCTAGAACTGCTTGTGAACAAAGCTGATAACTTAGCCACTAGTTCAGTGTCGTATCGCGCTACTTCTCGCACACTTCAACGCTCTCTATTCTGGAAGAATATCAAAATGTATGTCATATTGGTGTCCATAGCAGCATTGGCGGTTTACTTAATAGGAGCGATGGCGTGTGGAGGCCTCGCATGGAAATCTTGCGTCGGTTAA

Protein

MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRFTTAFADTAQTAIPYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMRGEKLELLVNKADNLATSSVSYRATSRTLQRSLFWKNIKMYVILVSIAALAVYLIGAMACGGLAWKSCVG

Similarity

Belongs to the synaptobrevin family.

Uniprot

H9IVH8   Q157R9   A0A194PDU7   A0A212FHX6   A0A2W1BR95   A0A2A4JYF3   + More
A0A2H1VBH0   A0A194RSE0   E2BVD4   A0A067R381   A0A1W4XJM7   A0A0C9QUM8   J3JY72   N6UIR5   A0A232FG65   A0A1Y1MUI8   A0A1B6FRE5   A0A158NBH3   F4X8P9   A0A195FDX6   E9J188   A0A195DSB8   A0A0J7KWZ1   A0A1B6KPD5   E1ZZ68   A0A1B6I2Y0   A0A2P8XEF4   E0VXM7   A0A1B6E5M8   A0A151IGU3   A0A2J7QB94   A0A1B0GKF3   A0A154NZA9   A0A1L8DVT3   A0A1B0DFU5   A0A1Q3FGT9   A0A1Q3FGV5   A0A1Q3FHS5   U5EV63   A0A182GDX2   A0A023EKR7   A0A3R7Q583   A0A1Q3FHI9   B0WWI3   A0A224XX87   A0A0V0G840   A0A069DPN0   A0A0L0CGA7   A0A336MC22   B4NWL5   B3N6V4   B4HT51   B4QHR8   A0A1W4ULZ3   Q7JYX5   A0A2A3ESM8   V9IET7   A0A088AUK2   A0A0P6IEN8   A0A1A9W6F0   A0A0P4X8A1   A0A1A9YKG9   A0A1B0BZD1   A0A0P4VZ58   A0A1J1HYD7   A0A1A9ZHY5   A0A087UNC0   A0A0P4VTT1   T1IC92   A0A1A9USD0   D3TLF4   A7SBE8   A0A2B4SX42   A0A182ME07   E9FRH1   A0A182W671   A0A1D2N7V5   B4KMG9   A0A182PV13   A0A182TGI1   A0A182S9L1   A0A3M6TZW8   A0A182XY95   A0A182VN60   A0A182X7J7   F5HJV6   A0A182I9T9   A0A1I8MIC1   C3YRU5   A0A091WH27   T1JBQ6   A0A182MZX9   A0A182QZM5   K7IZA2   A0A1S3KBD9   B4MKB4   A0A182RYU6   A0A3L8DWL2   B4LNG1   B3MIM4  

Pubmed

19121390    26354079    22118469    28756777    20798317    24845553    + More
22516182    23537049    28648823    28004739    21347285    21719571    21282665    29403074    20566863    26483478    24945155    26334808    26108605    17994087    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    27129103    20353571    17615350    21292972    27289101    30382153    25244985    12364791    14747013    17210077    25315136    18563158    20075255    30249741    18057021   

EMBL

BABH01001082    BABH01001083    DQ539017    ABG20589.1    KQ459606    KPI91193.1    + More
AGBW02008449    OWR53338.1    KZ149987    PZC75667.1    NWSH01000440    PCG76412.1    ODYU01001638    SOQ38146.1    KQ459700    KPJ20392.1    GL450828    EFN80310.1    KK852729    KDR17570.1    GBYB01007459    JAG77226.1    BT128196    KB632166    AEE63157.1    ERL89310.1    APGK01013754    APGK01023602    APGK01028435    KB740687    KB740505    KB739100    ENN79501.1    ENN80536.1    ENN82388.1    NNAY01000244    OXU29756.1    GEZM01021913    GEZM01021912    JAV88828.1    GECZ01017021    JAS52748.1    ADTU01011107    GL888932    EGI57318.1    KQ981673    KYN38229.1    GL767586    EFZ13421.1    KQ980581    KYN15414.1    LBMM01002445    KMQ94823.1    GEBQ01026659    JAT13318.1    GL435311    EFN73483.1    GECU01026418    JAS81288.1    PYGN01002498    PSN30380.1    DS235833    EEB18133.1    GEDC01026151    GEDC01012760    GEDC01004067    JAS11147.1    JAS24538.1    JAS33231.1    KQ977661    KYN00686.1    NEVH01016301    PNF25854.1    AJWK01028802    KQ434778    KZC04338.1    GFDF01003679    JAV10405.1    AJVK01059022    GFDL01008264    JAV26781.1    GFDL01008271    JAV26774.1    GFDL01007973    JAV27072.1    GANO01001163    JAB58708.1    JXUM01056738    JXUM01056739    JXUM01056740    JXUM01056741    JXUM01056742    KQ561923    KXJ77148.1    JXUM01076850    JXUM01076851    GAPW01003815    KQ562973    JAC09783.1    KXJ74728.1    QCYY01002621    ROT68915.1    GFDL01008053    JAV26992.1    DS232147    EDS36075.1    GFTR01003653    JAW12773.1    GECL01002047    JAP04077.1    GBGD01002866    JAC86023.1    JRES01000507    KNC30524.1    UFQT01000677    SSX26469.1    CM000157    EDW89560.1    CH954177    EDV58203.1    CH480816    EDW47161.1    CM000362    CM002911    EDX06402.1    KMY92585.1    AE013599    AY071695    AAF58892.1    AAL49317.1    AHN56053.1    KZ288192    PBC34282.1    JR042464    AEY59623.1    GDIQ01007246    JAN87491.1    GDIP01245558    JAI77843.1    JXJN01023092    GDRN01085609    JAI61329.1    CVRI01000036    CRK93103.1    KK120696    KFM78859.1    GDKW01001205    JAI55390.1    ACPB03019762    CCAG010017571    EZ422256    ADD18532.1    DS469615    EDO39013.1    LSMT01000012    PFX33440.1    AXCM01002007    GL732523    EFX90164.1    LJIJ01000157    ODN01353.1    CH933808    EDW09857.1    RCHS01002515    RMX46960.1    AAAB01008847    EAA06868.3    EGK96571.1    EGK96572.1    APCN01001050    GG666548    EEN56850.1    KK735465    KFR14173.1    JH432018    AXCN02001343    CH963846    EDW72553.1    QOIP01000004    RLU24168.1    CH940648    EDW61113.1    KRF79781.1    CH902619    EDV38100.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000218220    UP000053240    UP000008237    + More
UP000027135    UP000192223    UP000030742    UP000019118    UP000215335    UP000005205    UP000007755    UP000078541    UP000078492    UP000036403    UP000000311    UP000245037    UP000009046    UP000078542    UP000235965    UP000092461    UP000076502    UP000092462    UP000069940    UP000249989    UP000283509    UP000002320    UP000037069    UP000002282    UP000008711    UP000001292    UP000000304    UP000192221    UP000000803    UP000242457    UP000005203    UP000091820    UP000092443    UP000092460    UP000183832    UP000092445    UP000054359    UP000015103    UP000078200    UP000092444    UP000001593    UP000225706    UP000075883    UP000000305    UP000075920    UP000094527    UP000009192    UP000075885    UP000075902    UP000075901    UP000275408    UP000076408    UP000075903    UP000076407    UP000007062    UP000075840    UP000095301    UP000001554    UP000053605    UP000075884    UP000075886    UP000002358    UP000085678    UP000007798    UP000075900    UP000279307    UP000008792    UP000007801   

PRIDE

H9IVH8    Q157R9    Q7JYX5   

Pfam

PF13774   Longin        + More
PF00957   Synaptobrevin

Interpro

IPR011012   Longin-like_dom_sf        + More
IPR001388   Synaptobrevin       
IPR010908   Longin_dom       

SUPFAM

SSF64356   SSF64356       

ProteinModelPortal

H9IVH8   Q157R9   A0A194PDU7   A0A212FHX6   A0A2W1BR95   A0A2A4JYF3   + More
A0A2H1VBH0   A0A194RSE0   E2BVD4   A0A067R381   A0A1W4XJM7   A0A0C9QUM8   J3JY72   N6UIR5   A0A232FG65   A0A1Y1MUI8   A0A1B6FRE5   A0A158NBH3   F4X8P9   A0A195FDX6   E9J188   A0A195DSB8   A0A0J7KWZ1   A0A1B6KPD5   E1ZZ68   A0A1B6I2Y0   A0A2P8XEF4   E0VXM7   A0A1B6E5M8   A0A151IGU3   A0A2J7QB94   A0A1B0GKF3   A0A154NZA9   A0A1L8DVT3   A0A1B0DFU5   A0A1Q3FGT9   A0A1Q3FGV5   A0A1Q3FHS5   U5EV63   A0A182GDX2   A0A023EKR7   A0A3R7Q583   A0A1Q3FHI9   B0WWI3   A0A224XX87   A0A0V0G840   A0A069DPN0   A0A0L0CGA7   A0A336MC22   B4NWL5   B3N6V4   B4HT51   B4QHR8   A0A1W4ULZ3   Q7JYX5   A0A2A3ESM8   V9IET7   A0A088AUK2   A0A0P6IEN8   A0A1A9W6F0   A0A0P4X8A1   A0A1A9YKG9   A0A1B0BZD1   A0A0P4VZ58   A0A1J1HYD7   A0A1A9ZHY5   A0A087UNC0   A0A0P4VTT1   T1IC92   A0A1A9USD0   D3TLF4   A7SBE8   A0A2B4SX42   A0A182ME07   E9FRH1   A0A182W671   A0A1D2N7V5   B4KMG9   A0A182PV13   A0A182TGI1   A0A182S9L1   A0A3M6TZW8   A0A182XY95   A0A182VN60   A0A182X7J7   F5HJV6   A0A182I9T9   A0A1I8MIC1   C3YRU5   A0A091WH27   T1JBQ6   A0A182MZX9   A0A182QZM5   K7IZA2   A0A1S3KBD9   B4MKB4   A0A182RYU6   A0A3L8DWL2   B4LNG1   B3MIM4  

PDB

4B93     E-value=1.0718e-61,     Score=597

KEGG

733071    K08515 vesicle-associated membrane protein 7 | (RefSeq) synaptobrevin

PATHWAY

04130    SNARE interactions in vesicular transport - Bombyx mori (domestic silkworm)

GO

GO:0016192   GO:0016021   GO:0000149   GO:0097352   GO:0005484   GO:0044754   GO:0031201   GO:0006906   GO:0019905   GO:0031902   GO:0008333   GO:0006887   GO:0006810   GO:0006412   GO:0016301   GO:0016573   GO:0008270   GO:0022891   GO:0003707   GO:0051537  

Length:

219

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.08671

Exp number, first 60 AAs:

0.13491

Total prob of N-in:

0.42757

outside

1  -  189

TMhelix

190  -  212

inside

213  -  219

 

 

Pi

269.237191

Theta

175.365971

Tajima's D

0.823922

CLR

0.624537

CSRT

0.605669716514174

Interpretation

Uncertain