Gene

KWMTBOMO07743

Annotation

PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Amyelois_transitella]

Location

Bomo_Chr13(-):6047719-6048923      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.942 Nuclear   Reliability : 1.558

CDS

ATGGGTTACATAGTTACAGTCAAATACATAGCTGAGGTCACCGGTGCACCCCATGGCGCACAAATACAGAAAATATATTTTCCGGTACCCGGCGCCGCGCCGGCCACCCCGCCGGCCACCCGCTACACCAGTAGTGCGCTCGCGCCAACAAATGTGGTGATGGCACTATGTGAAAATATATTTGACAAAGGACACACGCTAGCAACTGATAATTGGTACACTAGCTTGCAACTGGCTTATCGGTTATTGGAGAAGCAAACCCATTTAATTGGCACATTGCGAAAAAACAGAAGAGGATTGCCTAAGGCTGTTGTTGATTCGAAACTGCAAAAAGGTGAAACAATGGCTATGGAGAATGAAGATGGAGTAACAGTGCTTAAATGGAAAGATAAGAGGGACGTGCTTATGCTGTCGACAAAGCATTCCGACAAAATTGCTGTGGTGGTGAAAAAAGGCAAACAGATTCGTAAACCAAAAGCTATTTTGGATTATAATAAATCGAAAGGGTCTGTAGACATGAGTGACCAGATGGGTGCCTATTCTTCGCCATTGCGGAAAACCGTAAAATGGTATAGAAAATTGGCAATAGAACTACTTCTAAATACGGCAGTTGTAAATGCTTGGGTCATGTACAATGAAAATAAGCAGAGCAAATCTTCAATTGTCGACTTTAGGAGGGCTCTCATAAATTATTTGACTCGGCCAGCAGATTCCCAAGAAATAATTATCAATGAAAGACCTAAAAGACTCAAGCATGTTCTAAAATTAAAGGAAGGAAAAGTAAGAGACACGCGTCGTTTTTGCGTGAAATGTTATAAAGATTCAGTACAGGAATTTGGTCGTAAAGTAGCTAAGAATAAAGCTAAGAAATAA

Protein

MGYIVTVKYIAEVTGAPHGAQIQKIYFPVPGAAPATPPATRYTSSALAPTNVVMALCENIFDKGHTLATDNWYTSLQLAYRLLEKQTHLIGTLRKNRRGLPKAVVDSKLQKGETMAMENEDGVTVLKWKDKRDVLMLSTKHSDKIAVVVKKGKQIRKPKAILDYNKSKGSVDMSDQMGAYSSPLRKTVKWYRKLAIELLLNTAVVNAWVMYNENKQSKSSIVDFRRALINYLTRPADSQEIIINERPKRLKHVLKLKEGKVRDTRRFCVKCYKDSVQEFGRKVAKNKAKK

Similarity

Belongs to the universal ribosomal protein uS3 family.

Uniprot

S4P945   A0A023F0B8   A0A023EYQ2   S4NY54   A0A084W7H9   S4PBM2   + More
J9KNJ0   A0A1B6J5E9   J9K6D0   J9K106   J9LK68   X1WU42   A0A2H8TZ84   A0A0D6LDM3   A0A0D6LHL4   A0A016SIZ8   J9KXH3   A0A0P4WIX9   A0A016VEZ7   J9JVX5   A0A1B6KIH2   J9JQ12   A0A2S2QDJ8   X1X046   A0A0N4XY30   A0A023EYN9   A0A1B6HG03   J9MA42   A0A1B6IUZ3   A0A016U6U0   A0A2S2Q7N7   J9LWR0   A0A016V127   J9M7T4   T1I3L1   A0A0N4Y481   A0A016VFC3   A0A016VFZ3   A0A0N4W5M2   S4P9J6   A0A1B6MQT6   W6NLG1   X1XRD4   A0A0K0EJ21   T0MIV2   A0A2H1X1M1   T0MM39   A0A183G7U2   A0A3P8A9A8   A0A368GTV8   A0A0N4WU61   J9LKV2   V5GG67   Q7PKD9   A0A182KT90   A0A0N4UUN0   A0A182TMA0   A0A182V3F3   X1XBY4   A0A016T3Q5   J9LVU9   J9JPM8   A0A2H8TRK2   A0A2S2QUS6   J9KLM1   A0A0N4WS15   A0A183F4M8   A0A3P7UFA4   J9LZQ6   J9LP86   A0A1B6E873   A0A182X057  

Pubmed

23622113    25474469    24438588    25730766    23829473    12364791    + More
14747013    17210077    20966253   

EMBL

GAIX01005691    JAA86869.1    GBBI01004438    JAC14274.1    GBBI01004440    JAC14272.1    + More
GAIX01013935    JAA78625.1    ATLV01021248    KE525315    KFB46173.1    GAIX01004551    JAA88009.1    ABLF02015113    GECU01032257    GECU01013302    JAS75449.1    JAS94404.1    ABLF02025866    ABLF02025869    ABLF02025877    ABLF02038619    ABLF02011361    ABLF02018838    GFXV01007414    MBW19219.1    KE125214    EPB70205.1    KE125300    EPB69401.1    JARK01001552    EYB90668.1    ABLF02011601    ABLF02011602    GDRN01069744    JAI63996.1    JARK01001346    EYC26204.1    ABLF02030622    ABLF02030627    GEBQ01028741    JAT11236.1    ABLF02010187    ABLF02050407    GGMS01006604    MBY75807.1    ABLF02011864    ABLF02011866    ABLF02042566    UYSL01019948    VDL71548.1    GBBI01004439    JAC14273.1    GECU01034165    JAS73541.1    ABLF02002863    ABLF02002864    GECU01016947    JAS90759.1    JARK01001390    EYC10641.1    GGMS01004555    MBY73758.1    ABLF02029982    JARK01001356    EYC20951.1    ABLF02007064    ACPB03026393    UYSL01020365    VDL74272.1    EYC26339.1    EYC26340.1    UZAF01016313    VDO25445.1    GAIX01003729    JAA88831.1    GEBQ01001683    JAT38294.1    CAVP010060744    CDL96544.1    ABLF02012265    KE647206    EQB60920.1    ODYU01012748    SOQ59213.1    KE647018    EQB62075.1    UZAH01030316    VDP10112.1    JOJR01000056    RCN47811.1    ABLF02029983    GALX01005527    JAB62939.1    AAAB01008986    EAA43299.1    UXUI01007140    VDD85673.1    ABLF02016107    JARK01001477    EYB97365.1    ABLF02010611    ABLF02010612    ABLF02017387    GFXV01004053    MBW15858.1    GGMS01012057    MBY81260.1    ABLF02028028    UZAF01018515    VDO52364.1    UZAH01001106    VDO19503.1    ABLF02013737    ABLF02006169    ABLF02055685    GEDC01003168    JAS34130.1   

Proteomes

UP000030765    UP000007819    UP000024635    UP000038043    UP000271162    UP000015103    + More
UP000038042    UP000268014    UP000025227    UP000035681    UP000050761    UP000252519    UP000007062    UP000075882    UP000038041    UP000274131    UP000075902    UP000075903    UP000076407   

Pfam

PF13843   DDE_Tnp_1_7        + More
PF05699   Dimer_Tnp_hAT
PF02037   SAP
PF00188   CAP
PF00189   Ribosomal_S3_C
PF07650   KH_2
PF13842   Tnp_zf-ribbon_2
PF05380   Peptidase_A17

Interpro

IPR029526   PGBD        + More
IPR008906   HATC_C_dom       
IPR012337   RNaseH-like_sf       
IPR003034   SAP_dom       
IPR036361   SAP_dom_sf       
IPR014044   CAP_domain       
IPR035940   CAP_sf       
IPR005703   Ribosomal_S3_euk/arc       
IPR036419   Ribosomal_S3_C_sf       
IPR001351   Ribosomal_S3_C       
IPR004044   KH_dom_type_2       
IPR018280   Ribosomal_S3_CS       
IPR015946   KH_dom-like_a/b       
IPR009019   KH_sf_prok-type       
IPR032718   PGBD4_C_Znf-ribbon       
IPR008042   Retrotrans_Pao       

SUPFAM

SSF53098   SSF53098        + More
SSF68906   SSF68906       
SSF55797   SSF55797       
SSF54821   SSF54821       
SSF54814   SSF54814       

Gene 3D

1.10.720.30     3.40.33.10     3.30.1140.32     3.30.300.20    

ProteinModelPortal

S4P945   A0A023F0B8   A0A023EYQ2   S4NY54   A0A084W7H9   S4PBM2   + More
J9KNJ0   A0A1B6J5E9   J9K6D0   J9K106   J9LK68   X1WU42   A0A2H8TZ84   A0A0D6LDM3   A0A0D6LHL4   A0A016SIZ8   J9KXH3   A0A0P4WIX9   A0A016VEZ7   J9JVX5   A0A1B6KIH2   J9JQ12   A0A2S2QDJ8   X1X046   A0A0N4XY30   A0A023EYN9   A0A1B6HG03   J9MA42   A0A1B6IUZ3   A0A016U6U0   A0A2S2Q7N7   J9LWR0   A0A016V127   J9M7T4   T1I3L1   A0A0N4Y481   A0A016VFC3   A0A016VFZ3   A0A0N4W5M2   S4P9J6   A0A1B6MQT6   W6NLG1   X1XRD4   A0A0K0EJ21   T0MIV2   A0A2H1X1M1   T0MM39   A0A183G7U2   A0A3P8A9A8   A0A368GTV8   A0A0N4WU61   J9LKV2   V5GG67   Q7PKD9   A0A182KT90   A0A0N4UUN0   A0A182TMA0   A0A182V3F3   X1XBY4   A0A016T3Q5   J9LVU9   J9JPM8   A0A2H8TRK2   A0A2S2QUS6   J9KLM1   A0A0N4WS15   A0A183F4M8   A0A3P7UFA4   J9LZQ6   J9LP86   A0A1B6E873   A0A182X057  

KEGG

105842729    no KO assigned | (RefSeq) piggyBac transposable element-derived protein 3-like

GO

GO:0046983   GO:0016021   GO:0003723   GO:0015935   GO:0003735   GO:0006412  

Length:

290

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.92622

Exp number, first 60 AAs:

0.00583

Total prob of N-in:

0.15839

outside

1  -  290

 

 

Pi

251.443605

Theta

176.691951

Tajima's D

1.330967

CLR

0

CSRT

0.752012399380031

Interpretation

Uncertain