SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07737
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.347
 

Sequence

CDS
ATGGAAGAAGAGCTCTTAGGGTTTCTCGGGTTACTTGCCGAGAAGTACCCGGTGCTATCCAACCTCACGGCCGAATTCGCGGCCTACAGGGCCGCCCGCGCGAGTCCCGCCCCGCCCGCGTCCCTCGCCGCGTCATTTCGAGCCGCGCAGTCATGCCCCGCCCCCAAATCCAATTTGAGCGCACGTACGCACGTAGCGACTCAGGAAGCGCCTAGCGCCAACGAAGCGCCTAACGCACCCGCGACGTCATTCTCGCCAATCTCATCCGTCGCGTCGTCCGTAATAATTAACTCAGGTTCAGACTCCGATACCGGATCGGAGATGGACTTCGAGTCCGCGACGAGCCCGCAGCCCGGAACCTCGGATGGGTTCCAAACGGTTAAACGCGGGAAAAAACGTACTCGCGCCGTGGAGTCCCGGAGCTCCACGACAAAACAAACCAAGTCAGCGACTGCCTCCCGTCCGCAGGTAGTCGTGACACCGGAGTCGGACTCCGGCCGCCGCGCAACCCCACCGCCGCGTCCCAAGCCCGCATCCGCGCAAAAAACCGTCGCCCCGCCCCCGCTGATTCTCCAGGAGAAGTCAGCATGGAACCGCGTCTCCCAGGCCCTTCAGGCAAACAAAATAAATTATACCCATGCGCGTAACGTCGCGCATGGGATTCAAATAAAGGTCGCAACGCCGGGCGACCATAGGGCTCTATCCGCGTACCTCCGAAAGGAGAACATAGGTTTCCATACCTATGCTCTTCAGGAGGACCGCGAGCTCCGCGTAGTAATACGCGGAGTTCCGAAGGAACTCGACATAGAGTACGTAAGGGAGGATCTGACCGCTCAGTCCCTCCCGATAGTAAGTGTGCACCGGATGCACAACGGACGCGACAAAAAACCATATAACATGGTTCTAGTCGCTCTAGAACCAACCCCGGAGGCCAAGAAAAAGATCGCATGTCTCGCGACAGTATGTGGCCTATCCGGGGTTACCATTGAAGCCCCCCATAGACGTGGCACTCCCGGACAGTGCCACAGATGCCAACTATATGGCCACTCGGCTCGGAATTGCCACGCGCGCCCCCGCTGCGTGAAGTGTCTCGGCGATCACGCTACGGTAGATTGCTCGCGAGTTAAGGAAACCGCGACCGAACCTCCAAGCTGTGTCCTATGCCTTAAGCAAGGGCACCCCGCGAATTACCGTGGATGTCCTAGGGCTCCGCGGAAACGTCCGACCCACCCAGCCCCCCGTACCGTCGGCCCAAAGACTTCGGTGCCTTCAGCATCGAAACCCGCCTTCGTACCGGCTGCGGTTCCCACCGTCTCGGCGTGGAATAAACCGCTGCCGTATACGAGGTCGGGAACACAAACCGCACCCCAGCCCCCGCTCGCGACACGTCCCGCGCCGCAGCCCCTGCTCGCACCTCCCCCCGCGCCCGCGTACCGTCCCCCGCAACCTTCAGCCGTCAACGACTTCACGCTCGTGCGCGACTTCGTCACGGCGGTCAACTTCGACCGTCTGCGATCGTTCGCAGACGCGATGCGAAGGGCGGTAAACCCCGAACAACGGCTCGCGGCCGCGTTCGAATACATGGACGTTTACGAGTCCGTGGCCCCATTCTACAATGCTAACGGACTCGCGCGACAACGCGATCAAATTTACGAATTCCTCCGCGACAATCTTGTAGATATTCTGCTAGTGCAGGAGACCTGCCTGAAGCCCTCGCGTCGTGACCCGAAAGTCGCGAATTACGTCATGGTTAGGAATGACAGACTCACCGCCTCCAAAGGCGGGACTGCCATTTACTATAGGCGGGCCCTGCACGTTGTCCCTCTCGATACCCCCTCGCTCTCACATATCGAGGCGTCAGTGTGCCGTATCTCGCTGACGGGACACCAGCCGATCGTCATCGCATCCGTTTATCTCCCCCCGGACAAGCCCCTTCTGAGCAGTGACATCGAGTCACTGTTCGGCATGGGAGACTCCGTCATCCTGGCAGGCGATTTAAATTGCCACCACACTAGGTGGAACTGCCACAGTTCAAACATAAACGGTAGGCGTCTCGACGCGTATATAGACGACCTTACCTTTGAAGTAGTCGGTCCCCCAACTCCAACATGTTATCCGTATAACATCGCGCTCCGTCCGAGCACTATAGACCTGGCACTGCTGAGGAACGTAACTCTGCGCTTGCGTTCCATCGAAGCAATGTCAGAGCTCGACTCAGACCACCGACCTGTCGTTATGCAGCTCGGTCGCCCCCACAACCCAGTCACAGCTACGAGGACCATGGTGGACTGGAAGAAGCTGGGCAAATGCTTAGCCGATGCCGCTCCACCAATCCTCCCCTGCGGCCCGGATTCAACTCCATCCCCCGAGGACACAGTCGAATCCATAAACATCATCACGGATCACATCTCTTCCGCGATCATAAGATCCTCAAAAGAAGTCGATGTGGAGGATAGCTTCCACCGCATCAGACTGTCCCCCGAACTTAGGAACCTCCTAAGAGTTAGAAACGCGGCAATCCGGGCCTACGATCAACTTCCCACGCACTCAAACCGGATTCGGATGCGTCGTCTACAGCGGGATGTAAAATCTCGCCTAAGCGACGCCCGAAATGAGAATTGGGATAGTTACTTAGAAGGACTCGCGCCCTCTCATCAAGCATACTGGCGACTAGCAAGGACTCTCAAGTCCGAAACTACCGCTACTATGCCTCCTCTCGTACGCCCTTCAGGCCAACCACCGGCTTTCGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAATACGCGGACCCCGAACACACCGAGGCAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCACCCTCGGACGCGTTACCCCCCATTACCTCTGACGAAGTTAGAGAAGTAATAGACAACCTTCAACCTAAGAAGGCACCCGGCTCCGACGGCATCCGCAACCGCGCGTTAAAACTCTTACCAGTCCAACTGATAACAATGTTGGCTACCATCTTAAATGCCGCTATGACGCACTGCATCTTTCCGGCGGTATGGAAAGAAGCAGACGTTATCGGTATACACAAGCCGGGCAAACCGAATAATGAAACCGCTAGTTACCGACCGATTAGTCTCCTCCCAGCGATAGGCAAAATTTACGAACGGCTCCTTCGGAAACGCCTCTGGGACTTCGTTACCGCGAATAAAATTCTAATAGACGAGCAGTTTGGATTCCGCGCCAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATCTTAATAGGGCTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGATGTAGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTGATCTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCATCTGACTGCCGGAGTCCCGCAAGGCTCCGCACTCTACCGTTACTATTTAGTTTGTATATCAACGATATACCCCGGTCTCCGGAGACCCATCTAG
Protein
MEEELLGFLGLLAEKYPVLSNLTAEFAAYRAARASPAPPASLAASFRAAQSCPAPKSNLSARTHVATQEAPSANEAPNAPATSFSPISSVASSVIINSGSDSDTGSEMDFESATSPQPGTSDGFQTVKRGKKRTRAVESRSSTTKQTKSATASRPQVVVTPESDSGRRATPPPRPKPASAQKTVAPPPLILQEKSAWNRVSQALQANKINYTHARNVAHGIQIKVATPGDHRALSAYLRKENIGFHTYALQEDRELRVVIRGVPKELDIEYVREDLTAQSLPIVSVHRMHNGRDKKPYNMVLVALEPTPEAKKKIACLATVCGLSGVTIEAPHRRGTPGQCHRCQLYGHSARNCHARPRCVKCLGDHATVDCSRVKETATEPPSCVLCLKQGHPANYRGCPRAPRKRPTHPAPRTVGPKTSVPSASKPAFVPAAVPTVSAWNKPLPYTRSGTQTAPQPPLATRPAPQPLLAPPPAPAYRPPQPSAVNDFTLVRDFVTAVNFDRLRSFADAMRRAVNPEQRLAAAFEYMDVYESVAPFYNANGLARQRDQIYEFLRDNLVDILLVQETCLKPSRRDPKVANYVMVRNDRLTASKGGTAIYYRRALHVVPLDTPSLSHIEASVCRISLTGHQPIVIASVYLPPDKPLLSSDIESLFGMGDSVILAGDLNCHHTRWNCHSSNINGRRLDAYIDDLTFEVVGPPTPTCYPYNIALRPSTIDLALLRNVTLRLRSIEAMSELDSDHRPVVMQLGRPHNPVTATRTMVDWKKLGKCLADAAPPILPCGPDSTPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPELRNLLRVRNAAIRAYDQLPTHSNRIRMRRLQRDVKSRLSDARNENWDSYLEGLAPSHQAYWRLARTLKSETTATMPPLVRPSGQPPAFDDDDKAELLADALQEQCTTSTQYADPEHTEAVDREVERRASLPPSDALPPITSDEVREVIDNLQPKKAPGSDGIRNRALKLLPVQLITMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPNNETASYRPISLLPAIGKIYERLLRKRLWDFVTANKILIDEQFGFRAKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDVAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRHLTAGVPQGSALYRYYLVCISTIYPGLRRPI

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
Interpro
IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
IPR000477   RT_dom       
IPR001878   Znf_CCHC       
SUPFAM
SSF57756   SSF57756        + More
SSF56219   SSF56219       
Gene 3D
ProteinModelPortal

Ontologies

Topology

Length:
1199
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.32207
Exp number, first 60 AAs:
0.0127
Total prob of N-in:
0.00058
outside
1  -  1199
 
 

Population Genetic Test Statistics

Pi
0
Theta
0
Tajima's D
0
CLR
0.526154
CSRT
0
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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