Silkworm Genome Informatics Database

Gene

KWMTBOMO07731

Pre Gene Modal

BGIBMGA000886

Annotation

PREDICTED:_lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Bombyx_mori]

Location

Bomo_Chr13(+):5553472-5558530 View in EpiBrowser

Transcription factor

zf-LITAF-like

Location in the cell

Extracellular Reliability : 3.246

CDS

ATGGCCCATAATGAACAGAAAACCGATTTGTCTGGCGTGCACTACGCACCGCCTCAACAAAATCCGCCTCCGTACAACAACCAGACACAGCCAGGTCTATACCCGGCCGTTCCTTCCGTCACCCCCGCGCCCCCCCAGCAGTTCGTTACAGTTGTTCCGGCACAACAAATGGGCCCTGAGCCCACGAACACTAGCTGCCCTTCATGCAGTGCGGCAATCGTCACCAGAGTAGATCACGTGCCAGTGACTAAAACCCACCTGTTTGCTTTGCTTCTTTGCCTAATAGGTTGTTGCCCATGTGCTTGTATCCCTTACTGCACGGACTCCTGCAAAGATGCAAACCATTACTGTCCGAATTGCAACGCGTACATTGGAAGCTACAATCGCTAA

Protein

MAHNEQKTDLSGVHYAPPQQNPPPYNNQTQPGLYPAVPSVTPAPPQQFVTVVPAQQMGPEPTNTSCPSCSAAIVTRVDHVPVTKTHLFALLLCLIGCCPCACIPYCTDSCKDANHYCPNCNAYIGSYNR

Uniprot

H9IUF6 H9IUF5 H9IUF4 H9IUF3 A0A2M4C4E3 A0A182F3N0 + More
A0A2M4AXT4 A0A2M4C324 A0A1E1W5S5 A0A182JDM5 A0A182QDH4 A0A0A1WLG1 U4UE81 N6TKW6 A0A336M5R3 A0A336MNT9 A0A2M4CWR6 A0A1Y1KPT5 A0A1B6EBM5

Pubmed

19121390 25830018 23537049 28004739

EMBL

BABH01001130 BABH01001138 BABH01001139 BABH01001152 GGFJ01011039 MBW60180.1 + More
GGFK01012234 MBW45555.1 GGFJ01010267 MBW59408.1 GDQN01008729 JAT82325.1 AXCN02000670 GBXI01015054 JAC99237.1 KB632042 ERL88240.1 APGK01033028 KB740860 ENN78573.1 UFQS01000602 UFQT01000602 SSX05253.1 SSX25614.1 UFQT01001847 SSX31986.1 GGFL01005596 MBW69774.1 GEZM01078891 JAV62588.1 GEDC01001960 JAS35338.1

Proteomes

UP000005204 UP000069272 UP000075880 UP000075886 UP000030742 UP000019118 + More

PRIDE

H9IUF6 H9IUF5 H9IUF4 H9IUF3

Pfam

PF10601 zf-LITAF-like

Interpro

IPR037519 LITAF_fam + More
IPR006629 LITAF

ProteinModelPortal

H9IUF6 H9IUF5 H9IUF4 H9IUF3 A0A2M4C4E3 A0A182F3N0 + More
A0A2M4AXT4 A0A2M4C324 A0A1E1W5S5 A0A182JDM5 A0A182QDH4 A0A0A1WLG1 U4UE81 N6TKW6 A0A336M5R3 A0A336MNT9 A0A2M4CWR6 A0A1Y1KPT5 A0A1B6EBM5

KEGG

101740969 K19363 lipopolysaccharide-induced tumor necrosis factor-alpha factor | (RefSeq) lipopolysaccharide-i

GO

GO:0016021

PANTHER

PTHR23292

Length:

129

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

12.14658

Exp number, first 60 AAs:

0.00255

Total prob of N-in:

0.50414

outside

1 - 129

Pi

215.933658

Theta

170.370833

Tajima's D

1.033256

CLR

0.000032

CSRT

0.671066446677666

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree