Silkworm Genome Informatics Database

Gene

KWMTBOMO07730

Annotation

endonuclease-reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr13(-):5530330-5531231 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 2.01 Nuclear Reliability : 1.383

CDS

ATGTTTAAGACGCTGAACTGGAAAAAGATGGGCATAAACATTAATGGCCAGTACATCTCACACTTGCGGTTTGCAGATGACATAGTTCTCATGGCGGAATCGTTGCAACATCTGCAGCAGATGCTGAACGGCTTAGCAGATTCTTCACGACGAATTGGACTACGGATGAACATGGATAAAACCAAAGTGATGAACGGAGCCGAAACGTGGACACTCACAGTAAGGTTGGTCCGTCAGCTCAAAGTCGCTCAGCGAGCCATGGAAAGAGCCATGCTCGGAGTTTCTCTGAAGGATAAAATCCGGAATGAGATTATTCTACAGAGAACTAAAGTCATCGACATAGCTCAAAGAGTCAGCAAGCTGAAGTGGCAGTGGGCTGGCCATATATGCCGTAGGACTGACGATCGCTGGAGCAGACGGGTTCTCGAGTGGAGACCGCGCAGCGGAAGACGTAACGTGGGACGCCCCCTGGCTAGATGGTGCGATGACCTCCGCACGGTGGCCGGCCAGAAGTGGATGAGGAGAGCAGCAGACCGGGCTCAGTGGTGTAGATTGGGAGAGGCTTATGTCCAGCAGTGGACGACTGTGGGCTGTTGA

Protein

MFKTLNWKKMGININGQYISHLRFADDIVLMAESLQHLQQMLNGLADSSRRIGLRMNMDKTKVMNGAETWTLTVRLVRQLKVAQRAMERAMLGVSLKDKIRNEIILQRTKVIDIAQRVSKLKWQWAGHICRRTDDRWSRRVLEWRPRSGRRNVGRPLARWCDDLRTVAGQKWMRRAADRAQWCRLGEAYVQQWTTVGC

Uniprot

D7F165 D7F157 D7F160 D7F164 A0A3S2KX72 D7F158 + More
A0A3S2TAR4 D7F159 W4YXJ0 A0A2H1WXR7 A0A016RZX8 A0A016TIA8 A0A016WEQ1 A0A0K0FAW8 A0A0B2W3Y4 A0A183TZB3

Pubmed

20470440 25730766

EMBL

FJ265550 ADI61818.1 FJ265542 ADI61810.1 FJ265545 ADI61813.1 + More
FJ265549 ADI61817.1 RSAL01002130 RVE40575.1 FJ265543 ADI61811.1 RSAL01002362 RVE40503.1 FJ265544 ADI61812.1 AAGJ04050748 ODYU01011862 SOQ57848.1 JARK01001668 EYB83627.1 JARK01001434 EYC02684.1 JARK01000347 EYC38051.1 JPKZ01000255 KHN88272.1 UYWY01001253 VDM26453.1

Proteomes

UP000283053 UP000007110 UP000024635 UP000035680 UP000031036 UP000050794 + More
UP000267007

PRIDE

D7F165 D7F157 D7F160 D7F164 D7F158 D7F159 + More

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF01826   TIL

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR036084   Ser_inhib-like_sf
IPR002919   TIL_dom

SUPFAM

SSF56219 SSF56219 + More
SSF57567 SSF57567

Gene 3D

3.60.10.10

ProteinModelPortal

D7F165 D7F157 D7F160 D7F164 A0A3S2KX72 D7F158 + More
A0A3S2TAR4 D7F159 W4YXJ0 A0A2H1WXR7 A0A016RZX8 A0A016TIA8 A0A016WEQ1 A0A0K0FAW8 A0A0B2W3Y4 A0A183TZB3

KEGG

105841784 no KO assigned | (RefSeq) uncharacterized LOC105841784

GO

GO:0004519 GO:0003964

Length:

198

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00276

Exp number, first 60 AAs:

0.00136

Total prob of N-in:

0.20938

outside

1 - 198

Pi

128.319114

Theta

136.424903

Tajima's D

-0.186679

CLR

108.906061

CSRT

0.31618419079046

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics