Gene

KWMTBOMO07727

Pre Gene Modal

BGIBMGA000882

Annotation

39S_ribosomal_protein_L27?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr13(+):5378292-5379332      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.883 Mitochondrial   Reliability : 1.887

CDS

ATGTCATTTAACATTTTACTCAAAACATCAGAAAGAGGTATTTTTCTAAAAGAGCTTGTCCGGAATGCCAGTAAAAAAACCGGAGGTAGTACGCAGAATACTAATTGTAAAGTAAAACCAAAGCACAGAGGGTGGAAAGTACAAGATGGGCATTTTGTTCAAGCGGGACATATGTTAGCTACGCAAAGAACCACTCGGTTTCATCCAGGATTGAATGTTGGTTTTGGTGTTAATGGTACTTTGTTTGCAATGGAGGCTGGAAAAGTAGTTGTCACATGTGAAAAGTTTGATCCAAACTGGGATCACACTTGGGTCCAGAGGATGTACAAAGGGCGCTATGACCAGACCATCTATAAAAAATATTACAATGTTATACCAGAGCCCCAACATCAGAGATTTAAACTTATTGATGAAGTGTAA

Protein

MSFNILLKTSERGIFLKELVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKGRYDQTIYKKYYNVIPEPQHQRFKLIDEV

Uniprot

Q2F676   H9IUF2   A0A2A4JV64   A0A2H1VGX0   A0A0L7KRB2   A0A194RSN5   + More
A0A194PD68   A0A212FAH3   A0A182QEJ4   A0A182JRI7   A0A182R364   A0A182JFB0   A0A182NLB0   A0A182XWW3   B4NYY1   B3N3T1   A0A182XI08   A0A182TR95   A0A0K8TRR1   A0A182VCK0   A0A182HSY9   A0A182VXE3   A0A1W4WAL8   A0A0K8VHT6   A0A034V099   Q7QC64   A0A182PAF2   A0A0A1WFY0   A0A2M4AVS6   B3MU24   A0A2M4C2V1   A0A2M4C2U9   W8CEE1   B4LUW9   A0A182FT48   A0A0K8VS69   B4KLF6   A0A023EER1   A0A1A9VW29   A0A1B2AJA3   W5JM70   B4QA81   B4I399   A0A1A9XJN9   B4MZL4   A0A2M3ZCX9   B5RJ05   A0A0L0BSG7   Q29LK6   A0A1B0C305   A0A182SHR0   A0A1S4F1P0   A0A0M5IVX0   Q17I88   B4GPT5   Q86BM8   B0X4E4   A0A1Q3FJ80   A0A1I8MIH3   A0A1I8Q5F4   A0A1A9WKP2   B4JQS2   A0A0J7NW46   D6WIR5   A0A2S2R7E1   C4WXZ8   N6TD57   K7IQN7   R4V3V8   A0A232EU87   U4U6Z1   A0A2H8TIT5   A0A1W4XT03   A0A2P8XWX4   A0A067R3P3   A0A1B0CDW4   T1HG42   A0A0P4VLB3   A0A0L7QPE9   A0A026VYV4   A0A310SM28   A0A1L8E187   A0A0V0GAI5   A0A224XPI0   F4WKV1   A0A195BJH2   A0A158P3X1   A0A2A3E217   A0A151JVB5   E2AUD6   A0A154PDH4   A0A1Y1L7J6   A0A088AW11   A0A1J1I3V2   A0A1B6I9C8   A0A1B6GSW5   A0A151J8S6   A0A1B6L6Y0   A0A1B6CC52   A0A0A9YXG4  

Pubmed

19121390    26227816    26354079    22118469    25244985    17994087    + More
17550304    26369729    25348373    12364791    25830018    24495485    24945155    26483478    20920257    23761445    22936249    26108605    15632085    17510324    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    18362917    19820115    23537049    20075255    28648823    29403074    24845553    27129103    24508170    30249741    21719571    21347285    20798317    28004739    25401762    26823975   

EMBL

DQ311196    ABD36141.2    BABH01001167    NWSH01000518    PCG75901.1    ODYU01002500    + More
SOQ40057.1    JTDY01006620    KOB65832.1    KQ459700    KPJ20404.1    KQ459606    KPI91182.1    AGBW02009477    OWR50727.1    AXCN02000116    CM000157    EDW87645.1    CH954177    EDV57740.2    GDAI01000551    JAI17052.1    APCN01000376    GDHF01014199    JAI38115.1    GAKP01023386    JAC35572.1    AAAB01008859    EAA08179.5    GBXI01016363    JAC97928.1    GGFK01011407    MBW44728.1    CH902624    EDV33353.1    GGFJ01010492    MBW59633.1    GGFJ01010491    MBW59632.1    GAMC01000356    JAC06200.1    CH940649    EDW64296.1    GDHF01010593    JAI41721.1    CH933807    EDW12837.2    JXUM01102803    GAPW01005731    KQ564753    JAC07867.1    KXJ71792.1    KX531421    ANY27231.1    ADMH02001133    ETN63995.1    CM000361    CM002910    EDX03719.1    KMY88088.1    CH480820    EDW54244.1    CH963920    EDW77799.1    GGFM01005610    MBW26361.1    BT044279    ACH92344.1    JRES01001441    KNC22918.1    CH379060    EAL34039.3    JXJN01024742    CP012523    ALC38111.1    CH477241    EAT46409.1    CH479187    EDW39607.1    AE014134    AAO41158.1    AGB92564.1    AHN54117.1    DS232338    EDS40297.1    GFDL01007509    JAV27536.1    CH916372    EDV99252.1    LBMM01001275    KMQ96600.1    KQ971321    EEZ99502.1    GGMS01016736    MBY85939.1    ABLF02023377    AK342943    BAH72768.1    APGK01042723    KB741007    ENN75633.1    KC740674    AGM32498.1    NNAY01002176    OXU21866.1    KB631811    ERL86351.1    GFXV01002116    MBW13921.1    PYGN01001224    PSN36511.1    KK852726    KDR17653.1    AJWK01008307    ACPB03001139    GDKW01003402    JAI53193.1    KQ414815    KOC60518.1    KK107570    QOIP01000005    EZA48855.1    RLU22610.1    KQ764027    OAD54629.1    GFDF01001678    JAV12406.1    GECL01000972    JAP05152.1    GFTR01002030    JAW14396.1    GL888206    EGI65193.1    KQ976453    KYM85323.1    ADTU01008608    KZ288451    PBC25574.1    KQ981701    KYN37478.1    GL442815    EFN62993.1    KQ434878    KZC09902.1    GEZM01062527    GEZM01062524    GEZM01062523    GEZM01062521    GEZM01062520    GEZM01062519    GEZM01062518    GEZM01062516    JAV69659.1    CVRI01000040    CRK94875.1    GECU01024187    JAS83519.1    GECZ01004239    JAS65530.1    KQ979480    KYN21263.1    GEBQ01020494    JAT19483.1    GEDC01026264    JAS11034.1    GBHO01009354    GBRD01007495    GDHC01017588    JAG34250.1    JAG58326.1    JAQ01041.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000075886    UP000075881    UP000075900    UP000075880    UP000075884    UP000076408    UP000002282    UP000008711    UP000076407    UP000075902    UP000075903    UP000075840    UP000075920    UP000192221    UP000007062    UP000075885    UP000007801    UP000008792    UP000069272    UP000009192    UP000069940    UP000249989    UP000078200    UP000000673    UP000000304    UP000001292    UP000092443    UP000007798    UP000037069    UP000001819    UP000092460    UP000075901    UP000092553    UP000008820    UP000008744    UP000000803    UP000002320    UP000095301    UP000095300    UP000091820    UP000001070    UP000036403    UP000007266    UP000007819    UP000019118    UP000002358    UP000215335    UP000030742    UP000192223    UP000245037    UP000027135    UP000092461    UP000015103    UP000053825    UP000053097    UP000279307    UP000007755    UP000078540    UP000005205    UP000242457    UP000078541    UP000000311    UP000076502    UP000005203    UP000183832    UP000078492   

PRIDE

Q2F676    H9IUF2    B5RJ05    Q86BM8   

Pfam

PF01016   Ribosomal_L27

Interpro

IPR001684   Ribosomal_L27       

ProteinModelPortal

Q2F676   H9IUF2   A0A2A4JV64   A0A2H1VGX0   A0A0L7KRB2   A0A194RSN5   + More
A0A194PD68   A0A212FAH3   A0A182QEJ4   A0A182JRI7   A0A182R364   A0A182JFB0   A0A182NLB0   A0A182XWW3   B4NYY1   B3N3T1   A0A182XI08   A0A182TR95   A0A0K8TRR1   A0A182VCK0   A0A182HSY9   A0A182VXE3   A0A1W4WAL8   A0A0K8VHT6   A0A034V099   Q7QC64   A0A182PAF2   A0A0A1WFY0   A0A2M4AVS6   B3MU24   A0A2M4C2V1   A0A2M4C2U9   W8CEE1   B4LUW9   A0A182FT48   A0A0K8VS69   B4KLF6   A0A023EER1   A0A1A9VW29   A0A1B2AJA3   W5JM70   B4QA81   B4I399   A0A1A9XJN9   B4MZL4   A0A2M3ZCX9   B5RJ05   A0A0L0BSG7   Q29LK6   A0A1B0C305   A0A182SHR0   A0A1S4F1P0   A0A0M5IVX0   Q17I88   B4GPT5   Q86BM8   B0X4E4   A0A1Q3FJ80   A0A1I8MIH3   A0A1I8Q5F4   A0A1A9WKP2   B4JQS2   A0A0J7NW46   D6WIR5   A0A2S2R7E1   C4WXZ8   N6TD57   K7IQN7   R4V3V8   A0A232EU87   U4U6Z1   A0A2H8TIT5   A0A1W4XT03   A0A2P8XWX4   A0A067R3P3   A0A1B0CDW4   T1HG42   A0A0P4VLB3   A0A0L7QPE9   A0A026VYV4   A0A310SM28   A0A1L8E187   A0A0V0GAI5   A0A224XPI0   F4WKV1   A0A195BJH2   A0A158P3X1   A0A2A3E217   A0A151JVB5   E2AUD6   A0A154PDH4   A0A1Y1L7J6   A0A088AW11   A0A1J1I3V2   A0A1B6I9C8   A0A1B6GSW5   A0A151J8S6   A0A1B6L6Y0   A0A1B6CC52   A0A0A9YXG4  

PDB

6GB2     E-value=1.68666e-18,     Score=221

KEGG

101741251    K02899 large subunit ribosomal protein L27 | (RefSeq) 39S ribosomal protein L27, mitochondrial

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0003735   GO:0005840   GO:0005762   GO:0032543   GO:0005739   GO:0005622   GO:0016301   GO:0016573   GO:0008270   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR15893  

Length:

139

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.19167

Exp number, first 60 AAs:

1e-05

Total prob of N-in:

0.08686

outside

1  -  139

 

 

Pi

335.5045

Theta

229.168807

Tajima's D

1.461268

CLR

0

CSRT

0.778311084445778

Interpretation

Uncertain