Silkworm Genome Informatics Database

Gene

KWMTBOMO07723 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001265

Annotation

PREDICTED:_eukaryotic_translation_initiation_factor_5B_isoform_X2_[Amyelois_transitella]

Location

Bomo_Chr13(-):5326553-5338051 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.097

CDS

ATGGGTAAAGCAAAAAAGGGCAAGAAGAATCAAACCACTGAAGAGGGCGACAGCGATATTGAAACGACAAATATCAGCAATGCGAAGCCGGTTCAGAAAGTAAAAAAAATTGTTGATTCTGATGAAAGTGAAGAAGAAAAACCTAAGGCAAAAACAAAATCGAAAAAGTCAATTGATGAAGATGTAAAGGAAGTCACAAAGAATTTAAAAAATGTATCCGTAACAAACAAGTCTCAAAAGAAAAAAGCTGATGTAACTAGTGAAGATGAGTCAGATAGTGAACTAGAAGTGAAACCTAAAAAGGGAAAGAAAAAAGATGAAAAGAAAAGTGTCTTTTCTTTATTAGAAATAGAGAATGACGTCTCCCCACCTGAAGCACCTATGTCGTCTGAAGATGAAAAACCGGTCCAGAAGAAAGCTGCACCAGAAAAGAAAGAAACCACCGGAAAAAAAGGCAAGAAAGCCAAAAGAAAGAAGGATGATAGTGATGATGATATTGAAAAAGTCCTTGCTGAATTAGAAATGGAATATGCTGGTGTTAAAAAGGAACCTACTCCTGCTCCAGAATCTGCCCCAAAACCTCAAGAACCTGTTGAAGAAAAACTTAAAACAAAAAAGAAAGGTAAAAAGGATGAACCCAAAGAAGAAATTGTAGAGGTAAAGGAGGCTGATGATAATAAAAACGATAGTGAAAATGAAATTGATGTTAAAGTTAAAACAGCTGCTCAAAAGAAAAAGGAAAAAAAAGAAAGAGAAAAGTTGAAGAAACAAGAAGCCAAAAAGAAAGAAAAAGATCATGAAGACCGAAAAGAAGTTGGTGAAGGAAAACAAAAGGCAACTGAAAAAATAGAACCTAAGCCCATTGAAGAACCTAAAGAAGAACTTATACCTCCTTCAGAAGATAAAGAGGAAGGTGATACTCCTGCCGCTGAAGGAAAGAAAAAGAAAAAAGGTGAAAAAGAGAAAGAAGATAAGGGCAAGAAGGGGCCAACAAAAAAAACTATTGCTGCTATGCAAGAAGCATTGAAGAAAGTTAAAGAAGAAGAGGAACGTTTACAAAAAGAGGAAGAAGAAAGATTAAAGCAGGAGGAAGAGCGTGAGCAGCAGAGGTTAGAAGCCATTCGATTAGAGAAAGAGAAGAAAGAAAGAAAAAAGCAAAAGGAGAAGGAGAGAAAAGAAAGACTTAAAGCTGAGGGTAAACTACTTACTCCTAAACAAAAGGCTGAGAAAGCTAGAGCTCAAGCTTTGTTAGAATCATTAAAAGCTCGTGGTGTTGAAATCGGATCAACTGAAAAGAAACCACCTAGACCTGGAACAAGGGTTAAACCTGGAAAACTTAAAAGTCAAATGTCGCAAGATGCCCCACTGACTCCCATGGAAGAGAAAAAAGTTGAACTTGAGATTGTTGATGCTAAGCAGGAAGAACTCCAAAAAGTTGATTCAGAAAAAAAAGAGTCAGAAGTAGATTTAGTGAAAGATTCTTGGGATGCTGAATCTTCTGAAGATGAGACAGAGCCCGAAACAAAACAAGAATCTGTGACTCCAGTCAATGCAAAGAAGCCAGGCACGCCCGAACCTAAATTGAAGGATGATGATGAAGAGGAAAGTTCTAAAGATGAAGATGAAAGTTCAGACGAAGAGACCAGCTCAGATGAAGATGATGAAGACACAAAAAGGACTGATGCAGAAAAGAAAAGAGAAATAGTATTAAAGAGATTAGAGAAACGTCGTCAAGATAACGAAGCAAACAGAGTCAACAACCCATTACGTGCGGCCGTAGTATGTGTCCTCGGTCACGTAGATACAGGAAAAACCAAGATTTTGGACAAACTTCGAAGGACTAACGTACAAGACGGCGAGGCTGGTGGCATCACTCAACAAATCGGTGCAACTAATGTTCCCATTGAGAATATTAAGGAACAAACAAAACACGTCAAAGGGGTAAGTGAAATAGCCTTCAAGTTGCCAGGACTACTCATCATCGACACACCAGGCCACGAGTCTTTCAGTAACTTAAGAAGCAGAGGATCATCACTCTGTGATATTGCTATCCTTGTAGTTGACATAATGCACGGATTGGAACAGCAAACTATTGAGTCTATCAATTTACTGAAACAGAAGAAGACACCGTTCCTAGTGGCCCTGAATAAGATAGATCGTTTGTACGATTGGCAGAGTGCTCAACGTAAAGATATAAGGGATATATTGAAACTGCAGCAGCCAAATACTCAGCTGGAGTTTGAAAAACGCAGCAAAGATGTAATGTTGCAATTCGCTGAACAGGGCTTAAACGCAGCTCTGTTCTACGATAACCCGGATCCGCGTACGTACGTGTCTCTGGTGCCGACATCGGCTGTGACCGGCGAAGGTATGGGCAACCTGTTGGCGATGATAATCCAGGCTTGCGAGGGACCGCTGCACAAGCGACTCATCTTCTCGCAGCAGCTGCTCGCAACTGTACTCGAGGTGAAAGCGATCCCCGGCCTAGGAACAACCATAGACGCGATCCTTATTAACGGTACTCTGCACGAGGGCGACACGATGGTGCTGGCCGGCACCGACGGGCCCATCGTCACACAGATCCGGTCCCTCCTCATGCCGCAACCAATGAAGGAGCTGCGAGTTAAGAACGCATACATCGAGCACAAAGAAGTCGTAGGAGCACAGGGTGTTAAGATCGCAGCGAAGGAACTCGAAAAGGCTATCGCTGGATTGAACTTGCTTGTCGCTCAGAAACCGGATGAAGTTGATGTTCTGAAGTAA

Protein

MGKAKKGKKNQTTEEGDSDIETTNISNAKPVQKVKKIVDSDESEEEKPKAKTKSKKSIDEDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSELEVKPKKGKKKDEKKSVFSLLEIENDVSPPEAPMSSEDEKPVQKKAAPEKKETTGKKGKKAKRKKDDSDDDIEKVLAELEMEYAGVKKEPTPAPESAPKPQEPVEEKLKTKKKGKKDEPKEEIVEVKEADDNKNDSENEIDVKVKTAAQKKKEKKEREKLKKQEAKKKEKDHEDRKEVGEGKQKATEKIEPKPIEEPKEELIPPSEDKEEGDTPAAEGKKKKKGEKEKEDKGKKGPTKKTIAAMQEALKKVKEEEERLQKEEEERLKQEEEREQQRLEAIRLEKEKKERKKQKEKERKERLKAEGKLLTPKQKAEKARAQALLESLKARGVEIGSTEKKPPRPGTRVKPGKLKSQMSQDAPLTPMEEKKVELEIVDAKQEELQKVDSEKKESEVDLVKDSWDAESSEDETEPETKQESVTPVNAKKPGTPEPKLKDDDEEESSKDEDESSDEETSSDEDDEDTKRTDAEKKREIVLKRLEKRRQDNEANRVNNPLRAAVVCVLGHVDTGKTKILDKLRRTNVQDGEAGGITQQIGATNVPIENIKEQTKHVKGVSEIAFKLPGLLIIDTPGHESFSNLRSRGSSLCDIAILVVDIMHGLEQQTIESINLLKQKKTPFLVALNKIDRLYDWQSAQRKDIRDILKLQQPNTQLEFEKRSKDVMLQFAEQGLNAALFYDNPDPRTYVSLVPTSAVTGEGMGNLLAMIIQACEGPLHKRLIFSQQLLATVLEVKAIPGLGTTIDAILINGTLHEGDTMVLAGTDGPIVTQIRSLLMPQPMKELRVKNAYIEHKEVVGAQGVKIAAKELEKAIAGLNLLVAQKPDEVDVLK

Uniprot

H9IVI5

Pubmed

19121390

EMBL

BABH01001168

Proteomes

UP000005204

PRIDE

H9IVI5

Pfam

PF03144   GTP_EFTU_D2        + More
PF00009   GTP_EFTU
PF11987   IF-2

Interpro

IPR009000   Transl_B-barrel_sf        + More
IPR004161   EFTu-like_2
IPR015760   TIF_IF2
IPR036925   TIF_IF2_dom3_sf
IPR027417   P-loop_NTPase
IPR023115   TIF_IF2_dom3
IPR000795   TF_GTP-bd_dom
IPR005225   Small_GTP-bd_dom

SUPFAM

SSF52156   SSF52156        + More
SSF50447   SSF50447
SSF52540   SSF52540

Gene 3D

3.40.50.10050

ProteinModelPortal

H9IVI5

PDB

4UJD E-value=3.35671e-119, Score=1100

KEGG

101741532 K03243 translation initiation factor 5B | (RefSeq) eukaryotic translation initiation factor 5B

PATHWAY

03013 RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0003924 GO:0005525 GO:0016020 GO:0006508 GO:0016301 GO:0016573 GO:0008270 GO:0022891 GO:0003707 GO:0051537

PANTHER

PTHR43381

Length:

920

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03211

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00012

outside

1 - 920

Pi

177.796895

Theta

158.654798

Tajima's D

1.075161

CLR

0.276024

CSRT

0.686015699215039

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	GVEIGSTEK	100.00	1e-10
27530593	KTENEADVSSDDEAPPANDKKS	100.00	1e-05
27530593	KIGGAEETEVVSEDELPEVQKPSIKD	100.00	1e-05

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics