Gene

KWMTBOMO07722  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001265

Annotation

PREDICTED:_eukaryotic_translation_initiation_factor_5B_isoform_X2_[Papilio_polytes]

Location

Bomo_Chr13(-):5311431-5325201      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.412

CDS

ATGAAGGCTTCCGCCATGTTGGAACATGACTCTCAATACGCGACTATACTGGCTTTTGACGTCAAGATCGAACGCGACGCCCAAGAGCTAGCCGACCAGCTCGGCGTGAAGATATTCGCGGCCGACATCATATATCACTTGTTCGACAAGTTCACGGCGTACCGGGAGGAACTCAAGCAAAAGAAACGAGAGGAGTTCAAACATATCGCGGTGTTTCCTTGCAAACTCAAGATCCTGCCGCAGTTCGTTTTCAATTCCCGTGACCCCATCGTTGCCGGCATCATGGTCGAGGCTGGCGTAGTCAAAGAGGGAACCCCTATTTGTGTTCCTAGTAAAGAGTTCGTGGAGTTGGGCATCGTTACGTCGATAGAGGTGAACCACAAACAAGTGGAAACCGCCAGGAAGGGTCAGGAGGTCTGCATCAAGATCGAGCCCATACCCGGGGAGTCGCCCAAGATGTTCGGACGACACTTCGACGAGACCGATATGCTAGTCAGCAAGATATCGCGTGCCAGTATCGACGCGTGCAAGGATTACTTCCGGGACGACCTCATCAAGACCGACTGGCAGTTGATGGTTGAACTGAAAAAACTCTTCCAGATCCTCTAA

Protein

MKASAMLEHDSQYATILAFDVKIERDAQELADQLGVKIFAADIIYHLFDKFTAYREELKQKKREEFKHIAVFPCKLKILPQFVFNSRDPIVAGIMVEAGVVKEGTPICVPSKEFVELGIVTSIEVNHKQVETARKGQEVCIKIEPIPGESPKMFGRHFDETDMLVSKISRASIDACKDYFRDDLIKTDWQLMVELKKLFQIL

Uniprot

S4NTC3   A0A212EY62   A0A2H1VH31   A0A1B6JY57   A0A0C9RP38   Q16W14   + More
A0A1B6DH74   A0A1B6LZF6   A0A182RKK8   V9III5   A0A195CGF6   A0A1W4XTU6   A0A1W4XJC3   A0A0A9Y7Q0   B4N566   D1ZZJ4   A0A034VBM1   A0A2M4A928   A0A1L8DRN1   A0A1B6DHF4   A0A023EXV7   A0A1Q3FWJ4   A0A1Y1MY81   A0A1L8DRA9   A0A0C9SCL3   A0A0N0U730   A0A026W3N8   A0A2J7R8T1   N6TM48   A0A088AIB2   A0A2A3ELJ4   A0A3L8E342   A0A2M4CH17   A0A0L7RDU1   A0A2M4CH19   A0A151WXH4   A0A336MJP4   A0A158NP58   A0A154P717   A0A1Q3F532   A0A1Q3F4B5   A0A224XIZ4   A0A023F8S8   A0A1Q3F4I4   A0A1Q3F4U6   A0A069DWB6   A0A0C9RS21   A0A2M4A407   A0A2M4A3M2   A0A146LXL0   A0A2M4BAA0   A0A2M4BA80   A0A1B6G299   A0A1B6FTG5   W5JAP3   A0A1L8DRV3   R4G532   A0A0P4VPF9   A0A1Z5KWN4   A0A023FY06   L7MJA7   A0A1S4GMW5   A0A131XJM7   Q7Q2U9   U5EXD4   A0A182YPH8   A0A023GMA8   A0A336MD14   A0A2S2NB08   A0A067QWB9   J9K300   A0A084VU86   A0A2H8TKJ4   A0A224ZAW4   A0A131YKY6   A0A2C9H8D2   U4UK01   B4HTR9   A0A0K8UAX7   A0A1A9XSD9   A0A0A1WRA2   A0A2C9GPC6   A0A2S2QH20   A0A0M4EH50   B4KZK5   Q9VZP5   M9WSU4   Q494K9   L7X6D0   B4QPJ1   T1PH61   A0A0J9RPQ3   A0A034V9G7   R4TCQ6   Q9NJH7   A0A0L0BM58   B3NBW8   B4LF06   A0A0K8UFY9   A0A1I8M4S5  

Pubmed

23622113    22118469    17510324    25401762    17994087    18362917    + More
19820115    25348373    24945155    28004739    26131772    24508170    23537049    30249741    21347285    25474469    26334808    26823975    20920257    23761445    27129103    28528879    25576852    12364791    28049606    25244985    24845553    24438588    28797301    26830274    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    10678180    26108605    25315136   

EMBL

GAIX01012251    JAA80309.1    AGBW02011630    OWR46401.1    ODYU01002500    SOQ40061.1    + More
GECU01003594    JAT04113.1    GBYB01010195    JAG79962.1    CH477577    EAT38782.1    GEDC01012237    JAS25061.1    GEBQ01010919    GEBQ01001572    JAT29058.1    JAT38405.1    JR049143    AEY60875.1    KQ977791    KYM99797.1    GBHO01015395    GBHO01000528    JAG28209.1    JAG43076.1    CH964101    EDW79505.1    KQ971338    EFA01842.2    GAKP01019787    JAC39165.1    GGFK01003985    MBW37306.1    GFDF01005074    JAV09010.1    GEDC01012194    JAS25104.1    GAPW01000234    JAC13364.1    GFDL01003061    JAV31984.1    GEZM01020166    JAV89345.1    GFDF01005082    JAV09002.1    GBZX01001263    JAG91477.1    KQ435720    KOX78671.1    KK107468    EZA50226.1    NEVH01006721    PNF37229.1    APGK01029928    KB740753    ENN79063.1    KZ288222    PBC32066.1    QOIP01000001    RLU26619.1    GGFL01000459    MBW64637.1    KQ414614    KOC68901.1    GGFL01000458    MBW64636.1    KQ982668    KYQ52548.1    UFQT01000664    SSX26288.1    ADTU01022246    ADTU01022247    ADTU01022248    ADTU01022249    ADTU01022250    ADTU01022251    KQ434820    KZC06988.1    GFDL01012432    JAV22613.1    GFDL01012640    JAV22405.1    GFTR01008006    JAW08420.1    GBBI01000907    JAC17805.1    GFDL01012573    JAV22472.1    GFDL01012496    JAV22549.1    GBGD01000546    JAC88343.1    GBYB01010196    JAG79963.1    GGFK01002057    MBW35378.1    GGFK01001917    MBW35238.1    GDHC01006720    JAQ11909.1    GGFJ01000799    MBW49940.1    GGFJ01000798    MBW49939.1    GECZ01013204    JAS56565.1    GECZ01016305    JAS53464.1    ADMH02001797    ETN61071.1    GFDF01004866    JAV09218.1    GAHY01000246    JAA77264.1    GDKW01003561    JAI53034.1    GFJQ02007444    JAV99525.1    GBBL01000923    JAC26397.1    GACK01001666    JAA63368.1    AAAB01008968    GEFH01001814    JAP66767.1    EAA13253.3    GANO01001000    JAB58871.1    GBBM01000461    JAC34957.1    SSX26287.1    GGMR01001741    MBY14360.1    KK852870    KDR14622.1    ABLF02014627    ATLV01016691    ATLV01016692    ATLV01016693    ATLV01016694    ATLV01016695    ATLV01016696    ATLV01016697    ATLV01016698    ATLV01016699    ATLV01016700    KE525103    KFB41530.1    GFXV01002850    MBW14655.1    GFPF01012736    MAA23882.1    GEDV01009821    JAP78736.1    KB632390    ERL94394.1    CH480817    EDW50340.1    GDHF01028591    JAI23723.1    GBXI01013121    JAD01171.1    APCN01005327    GGMS01007269    MBY76472.1    CP012525    ALC42988.1    CH933809    EDW17932.1    AE014296    BT150280    AAF47774.2    AFH04270.1    AFH04273.1    AGV77182.1    BT150060    AGJ94562.1    BT023767    AAZ41775.1    BT149894    AGD79331.1    CM000363    EDX09084.1    KA647228    AFP61857.1    CM002912    KMY97364.1    GAKP01019788    JAC39164.1    BT150104    AGM14115.1    AF143207    AAF36532.1    JRES01001646    KNC21210.1    CH954178    EDV50785.1    CH940647    EDW69175.1    GDHF01026717    JAI25597.1   

Proteomes

UP000007151    UP000008820    UP000075900    UP000078542    UP000192223    UP000007798    + More
UP000007266    UP000053105    UP000053097    UP000235965    UP000019118    UP000005203    UP000242457    UP000279307    UP000053825    UP000075809    UP000005205    UP000076502    UP000000673    UP000007062    UP000076408    UP000027135    UP000007819    UP000030765    UP000076407    UP000030742    UP000001292    UP000092443    UP000075840    UP000092553    UP000009192    UP000000803    UP000000304    UP000037069    UP000008711    UP000008792    UP000095301   

PRIDE

Q9VZP5    M9WSU4    Q494K9    L7X6D0    R4TCQ6    Q9NJH7    + More

Pfam

PF00009   GTP_EFTU        + More
PF11987   IF-2
PF03144   GTP_EFTU_D2
PF14578   GTP_EFTU_D4
PF01798   Nop
PF08156   NOP5NT

Interpro

IPR015760   TIF_IF2        + More
IPR023115   TIF_IF2_dom3       
IPR004161   EFTu-like_2       
IPR009000   Transl_B-barrel_sf       
IPR000795   TF_GTP-bd_dom       
IPR036925   TIF_IF2_dom3_sf       
IPR027417   P-loop_NTPase       
IPR005225   Small_GTP-bd_dom       
IPR029459   EFTU-type       
IPR012974   NOP5_N       
IPR042239   Nop_C       
IPR012976   NOSIC       
IPR029012   Helix_hairpin_bin_sf       
IPR002687   Nop_dom       
IPR036070   Nop_dom_sf       

SUPFAM

SSF52156   SSF52156        + More
SSF52540   SSF52540       
SSF50447   SSF50447       
SSF89124   SSF89124       

Gene 3D

3.40.50.10050     1.10.246.90     1.10.287.660    

ProteinModelPortal

S4NTC3   A0A212EY62   A0A2H1VH31   A0A1B6JY57   A0A0C9RP38   Q16W14   + More
A0A1B6DH74   A0A1B6LZF6   A0A182RKK8   V9III5   A0A195CGF6   A0A1W4XTU6   A0A1W4XJC3   A0A0A9Y7Q0   B4N566   D1ZZJ4   A0A034VBM1   A0A2M4A928   A0A1L8DRN1   A0A1B6DHF4   A0A023EXV7   A0A1Q3FWJ4   A0A1Y1MY81   A0A1L8DRA9   A0A0C9SCL3   A0A0N0U730   A0A026W3N8   A0A2J7R8T1   N6TM48   A0A088AIB2   A0A2A3ELJ4   A0A3L8E342   A0A2M4CH17   A0A0L7RDU1   A0A2M4CH19   A0A151WXH4   A0A336MJP4   A0A158NP58   A0A154P717   A0A1Q3F532   A0A1Q3F4B5   A0A224XIZ4   A0A023F8S8   A0A1Q3F4I4   A0A1Q3F4U6   A0A069DWB6   A0A0C9RS21   A0A2M4A407   A0A2M4A3M2   A0A146LXL0   A0A2M4BAA0   A0A2M4BA80   A0A1B6G299   A0A1B6FTG5   W5JAP3   A0A1L8DRV3   R4G532   A0A0P4VPF9   A0A1Z5KWN4   A0A023FY06   L7MJA7   A0A1S4GMW5   A0A131XJM7   Q7Q2U9   U5EXD4   A0A182YPH8   A0A023GMA8   A0A336MD14   A0A2S2NB08   A0A067QWB9   J9K300   A0A084VU86   A0A2H8TKJ4   A0A224ZAW4   A0A131YKY6   A0A2C9H8D2   U4UK01   B4HTR9   A0A0K8UAX7   A0A1A9XSD9   A0A0A1WRA2   A0A2C9GPC6   A0A2S2QH20   A0A0M4EH50   B4KZK5   Q9VZP5   M9WSU4   Q494K9   L7X6D0   B4QPJ1   T1PH61   A0A0J9RPQ3   A0A034V9G7   R4TCQ6   Q9NJH7   A0A0L0BM58   B3NBW8   B4LF06   A0A0K8UFY9   A0A1I8M4S5  

PDB

4UJD     E-value=1.93573e-90,     Score=844

KEGG

101741532    K03243 translation initiation factor 5B | (RefSeq) eukaryotic translation initiation factor 5B

GO

GO:0005525   GO:0003924   GO:0003743   GO:0006413   GO:0005737   GO:0005829   GO:0017151   GO:0003746  

PANTHER

PTHR43381  

Length:

202

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00821

Exp number, first 60 AAs:

0.0053

Total prob of N-in:

0.08891

outside

1  -  202

 

 

Pi

224.713013

Theta

181.052889

Tajima's D

1.077398

CLR

0.619937

CSRT

0.680665966701665

Interpretation

Uncertain