Silkworm Genome Informatics Database

Gene

KWMTBOMO07707

Pre Gene Modal

BGIBMGA001271

Annotation

PREDICTED:_putative_leucine-rich_repeat-containing_protein_DDB_G0290503_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr13(-):4906166-4913375 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.635

CDS

ATGGCCAACGCGAGAAATCATAATGCACTGCAAGAAATAGAAAGGGAAGAAGGTGAAATAGTCGAAAGTTTGGATTATCTCTCGGACATATCGTCCGAGGAAGAATTCTTATTACGTCAAAGACTTCAAGTACTTGAGAATTACAACAATGTTCTTGAGAGAAAAAAAGCCAAGCGGTCTTCTATTGGGTCAGGAAATTTGCTCAAAAAGCCTCCTTTATTACTAGATCTATCTGATATTTCTGCGTCAGAAACTGAAGAGAATTACTGCACGCCCCAAAGCCACTTTGCTAAAGAACCCAAACAAAAAGCAAAATCACGTCGAAGACTGAAAAAACATAAGGAAAATTCGAGTAACGTGCTCCCAAGGACCAAGTATCACAAAAAATGTCACGTTTCAAAAAAGAAAAAAGGCGCAAAAGTTGTTTTAGAATCCAGCGACGAATCAGACGATGAATACAAATTTAAAAGAAGAAAGCTGGCTGATGCTGTGGTTGTGCATAAAGAGACAAACGAAAAGTCTTCCCTGAGTTCTAGGCTCAAAGAAATGTTACAGAAGGCTGTGAATCGTGAACCGTTAAAGACCTCATTGGATGATAAAAAAGTTGAAAGTTCAAATAATAAAATTATGACTTACGACTTATCGTCTCCAATATCTCCAAGTACAGAGGGTCATGTTTCATGTTTTGAAATAGGAGACAGCGTTATTACAAAAACCAAGTGCTCACTTTATCATAAGCCCGAGGTAATTGAAGCAAGTGTCGAAGACGAGGTCAGTACACAGGACATTAACCAAAACTCTAAAAGTAAAAACAATTTTGAACTAAGCAAAGATCGAAACATAGATATTGTTGATTCAGTTGATTGCATTCGTAAATCATTTGAACGAGAAGAACATTTACAGAAGGATTCAGATGATGACTTAGAAACTCTTCGACAAACAGCTCTTAACACGAAAGCTACTAAGTCATCACGAGATACAAGCGAAGGACCTGCTATAAATGAAAACAAAACGTTGTCTGATGATGAAGATAGTGACACGGCAGAATTGAGATTGATTTGTCTTAAATCCACATTATTGAAAAAAGCTATTGAAATGAAACAAAAACAAAAGAGACAGAAAAAGCTGTCTCAGTCTTCTCATAAGCGGGATGAGTTGATCGATTCTCTGTATGATGACTTAAATAATCGTGATTCTGGTAATAACACCGATAAAGAATCCGTGGATATGGAAATAGGTTCTGATGAAACCACCGAGAGTCGTAAAAAGACTCAGAAACGTTGTCAAGAATTAGAAATCATTTCGAATCAAAACTTTGATATACTGCCACCTCAGAATGTGCCAAAACAAGACGAATTTGATGAAGACGAAGATTTGTTACGTGCTAAATTATTGACTTCGCTGAGCAAAAACCTTCCGAATCTTGTTGATGCTGAATTAATAAATGATTCAAATGGAAAAGCGTCTGCTTCGAATAGTAAAATCAATGCCGAAAGTATTCCCGAAGAAAAGAAGTTTATCATAAAACTCGGCGAATCAGACTCCGAAGCGGAAAATGAGGCTACTAAAAACTTAACAAAAATGCACATGAAGCTATCGGAAGACGTATGCTTCGCAACGAAGTTAGATAATCTATTAAAATCAACACGAATGCAGGTCGAGAAGAATAAACATTCAGAAACAGAAACGAATTCACCTGTGACAAAGAAACCAGAGAAATTCGTTGCCAAGGCCCTAAATAATTTGCCAAAATCAGAACAAATCGAGTATAGGAACTTAGTAAAGCGAATGGCTGAATTGGAAAAAATGAAAGAGTCCCGACAGTCCGCTATGAACCATACGAATACAGTGCTAAGTTCGGACACATTGAAGCCAAAGAATGTGCCTTTCAATGCAAAAAGAATTGTAACAATTAGCAGTTTGGAAGAACAAATCGCTAATTCCAGGAAAAAAATTGCTGAGGAATCATCGAAAATGTTGAAACTAAAGGAGGAAGCCGTAAAACTCTCACAAAAATACAAGATAGCCGCCACAGAATTGCGTAATATATCAACAGCGATTTACATCAATAAAAAACACCAAAGAGCCATACAAAATTCACTAACGAAAATACGTTCAGATCATCAACTTCTAATTAAAAGTTCCAGTAAACAGCCGGTGTTAAATAAACATTCCAAGATAAACAGAATAGTGGATAAAAAAATTAACAAAATCACAATTCCGAATCATCCCCAAAAGGAGAACGATCCTCTGAAAATAGACCATAAAAATACGGTGTCAATTAAAAATACGAAATCTATTAAAGAGCATAAAGAAAGTCTTAGCGCGCCTACGCCGATGCTATCCATCGAAATTGATGTCGGCAGCAAGAGAAAAGTTGTTAAGTTGCCACCGAAAAATCCAGTCAAGTTGACCCCCACGAGTACAGATAATTTGCCACCGATAAGTCCAGTGAAGCCTAGATCGAACAGTCCCGTGCTGTTGTCCCCAAAGAGTCCAGTGAACGAGTCCATTCCAGAAATAGTGAGGGGCAGGTCGATTGAAAAAAAAGACCACAACATAAATCGGAACGATGACTCGACACAGTCGTCGGGTGATTGTGAACTTGGTGGTAATACAGTTGCGGAACGTGAACCGAAATTACCGAGAAGTGAAAAATACGAGAGGTTGCTCGGGGAATATATTTCGCCACTCGAATCACTAGGAACTTCGACTAGGTCGAGCGAAACCTATGTGAACGAAAACTCGAGACCAATGCCCATACAATGTTTTTACTTCGGCTTTTACAAAACAAACGTGGATAGCAACATGCGTACACATCGCCGTTCTCCGCAGCGATTTGGGGGGCCGATCCGAACGCGATCCTCTGTCCTTTCGAGGTCGGCGGAGATTGCAAGGACACCGAATGCAAATTCTTACACATCAACATCCTCACACAATGACACCACACACACACAGAGCACCGGCCGAGACACCATCGAATTCATTCGCATCATACATATCACATTTCAATCCCTCATCCCTTTTCCTACGACAGAAAACGGATCGTACTTGTGA

Protein

MANARNHNALQEIEREEGEIVESLDYLSDISSEEEFLLRQRLQVLENYNNVLERKKAKRSSIGSGNLLKKPPLLLDLSDISASETEENYCTPQSHFAKEPKQKAKSRRRLKKHKENSSNVLPRTKYHKKCHVSKKKKGAKVVLESSDESDDEYKFKRRKLADAVVVHKETNEKSSLSSRLKEMLQKAVNREPLKTSLDDKKVESSNNKIMTYDLSSPISPSTEGHVSCFEIGDSVITKTKCSLYHKPEVIEASVEDEVSTQDINQNSKSKNNFELSKDRNIDIVDSVDCIRKSFEREEHLQKDSDDDLETLRQTALNTKATKSSRDTSEGPAINENKTLSDDEDSDTAELRLICLKSTLLKKAIEMKQKQKRQKKLSQSSHKRDELIDSLYDDLNNRDSGNNTDKESVDMEIGSDETTESRKKTQKRCQELEIISNQNFDILPPQNVPKQDEFDEDEDLLRAKLLTSLSKNLPNLVDAELINDSNGKASASNSKINAESIPEEKKFIIKLGESDSEAENEATKNLTKMHMKLSEDVCFATKLDNLLKSTRMQVEKNKHSETETNSPVTKKPEKFVAKALNNLPKSEQIEYRNLVKRMAELEKMKESRQSAMNHTNTVLSSDTLKPKNVPFNAKRIVTISSLEEQIANSRKKIAEESSKMLKLKEEAVKLSQKYKIAATELRNISTAIYINKKHQRAIQNSLTKIRSDHQLLIKSSSKQPVLNKHSKINRIVDKKINKITIPNHPQKENDPLKIDHKNTVSIKNTKSIKEHKESLSAPTPMLSIEIDVGSKRKVVKLPPKNPVKLTPTSTDNLPPISPVKPRSNSPVLLSPKSPVNESIPEIVRGRSIEKKDHNINRNDDSTQSSGDCELGGNTVAEREPKLPRSEKYERLLGEYISPLESLGTSTRSSETYVNENSRPMPIQCFYFGFYKTNVDSNMRTHRRSPQRFGGPIRTRSSVLSRSAEIARTPNANSYTSTSSHNDTTHTQSTGRDTIEFIRIIHITFQSLIPFPTTENGSYL

Uniprot

H9IVJ1 A0A2A4JC47 A0A2W1BVT1 A0A0L7L5A4 A0A212EZE0 A0A2H1WV24 + More
A0A1E1W1P7 A0A1E1WUZ3 A0A1E1VXK9 A0A194QYN1 A0A194PD46

Pubmed

19121390 28756777 26227816 22118469 26354079

EMBL

BABH01001196 NWSH01001976 PCG69521.1 KZ149946 PZC76756.1 JTDY01002849 + More
KOB70605.1 AGBW02011306 OWR46850.1 ODYU01011215 SOQ56816.1 GDQN01011540 GDQN01010161 GDQN01007196 GDQN01005493 JAT79514.1 JAT80893.1 JAT83858.1 JAT85561.1 GDQN01006530 GDQN01000195 JAT84524.1 JAT90859.1 GDQN01011640 GDQN01004129 JAT79414.1 JAT86925.1 KQ460947 KPJ10562.1 KQ459606 KPI91157.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000007151 UP000053240 UP000053268 + More

PRIDE

H9IVJ1

Pfam

PF10650 zf-C3H1

Interpro

IPR019607 Putative_zinc-finger_domain + More
IPR000571 Znf_CCCH

ProteinModelPortal

H9IVJ1 A0A2A4JC47 A0A2W1BVT1 A0A0L7L5A4 A0A212EZE0 A0A2H1WV24 + More
A0A1E1W1P7 A0A1E1WUZ3 A0A1E1VXK9 A0A194QYN1 A0A194PD46

KEGG

101742502 no KO assigned | (RefSeq) putative leucine-rich repeat-containing protein DDB_G0290503

GO

GO:0046872

Length:

1018

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00142

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1 - 1018

Pi

201.171294

Theta

178.47207

Tajima's D

-0.537307

CLR

0.568127

CSRT

0.229388530573471

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics