Gene

KWMTBOMO07706

Pre Gene Modal

BGIBMGA000871

Annotation

Synaptotagmin-1_[Papilio_xuthus]

Location

Bomo_Chr13(+):4887766-4903274      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.241

CDS

ATGAGTGGACTGGGTCCTCCTGGTGTTTGGGCGGCGCAGAAGAGGTTAGAGTCATGGGCGCGGGCTGCCAGAGAGAGAACCTCAAGCGCCAGCAGCGGCCAGAGTCATAATTCGACTGACAGCTTCGGCGATGACAAGTCCCATGGAAGTCCAAGTGAGATGTTGATTTCGAAAGAGCAGTGCCGTGTTCAGCCGTTGAATTCGGACACTCGGGCTGCAACTTCTCTACCACATGCAAGACTCACCAGGACACCATCCATATCATCTCAAAGTAGTTTGGACAGTGCCACTTCAAGAGCCACTAGTCATCGTGGTTCGTCGCCTGCAATTCGGACGTTCGCTCCTGACGGTCGTACTCTTGAAGCCGGAGGTGTGAACGTGCCGAGATCACCGTCGCCTTTGCGTGCTGCTTCATTGGACGTCCGTGCAGCTCCTCTAGCTCATGGGTCACTAGCATCTTTGGCAGACTCGCCAGCGCCACCAAGCCCGAGACATGCCCCGCCTAGATGTCTGTCGCCTTTGTTGATGCCACCAAGACGAATAGACCGGAGCAATTCGCTGGTGGAGAGCAGCAGCGGTGCAGGACCACTGAGTCCAGGAGCCGGAGCAGCTGTTAGTGCTCTGGGAGCACTTCAACCTGATCTCTACACTAAGAGGGAGGCGCCTCTCGTGATAGAGCTCGAAGGGCTGGGACCTTCGCTTGGAAGACTACACTTACGCTTGAAATATGACTTCGATAGATCCGATCTGGAAGTTCATCTTATTGAAGCCCATGACCTGGCAGGATACGAAGCAGGCGGGTTCAATGACCCCTACGTCCGCGTCAGTCTCCTACCTGAAGTAGACACCCGCGTACGACAAACCCCAGTCCACAGGAACGAGGCGAATCCGTTCTTTGACCAGCATTTCAAGTTTCCCGTCTCGCATGATGAGCTCAGCGATAAAACTCTCCTGCTCCAAGTGTTCGATTATGACAGATTCTCCCGTAACGAAGTTATGGGTTCGGCTAAGGTTCCGTTATCGCGGGTGGAAGTAGCCGGTGGGGCTGAGGTGTGGGCGGAACTGTCTCGTGAACGACGTCCCCCTGAGGAGCTACAAGAATTGCTGCTGTCATTATCTTATCTACCCTCCGCCGAGAGGCTTACCGTCGTTGTGTTGAAAGCTAGGAATCTTCTACCGCCACAAGAGGGGAAAGAAGCTTTGGATGTATATGTCAAAGTGTATTTACTGGTGAATGGCAAACGAGTGAAGAAGAAGAAAACTAACAGGAAAGAGATAAATAATCCAGTGTGGAATGAAGCCCTTTCGTTCAGTCTACCCTCAGCTAATCTTCAAGAGGCTTCTATTGAGGTAAAATCAAGATTAACAAAATTGCTAACATCGTTGCACAGTACATGA

Protein

MSGLGPPGVWAAQKRLESWARAARERTSSASSGQSHNSTDSFGDDKSHGSPSEMLISKEQCRVQPLNSDTRAATSLPHARLTRTPSISSQSSLDSATSRATSHRGSSPAIRTFAPDGRTLEAGGVNVPRSPSPLRAASLDVRAAPLAHGSLASLADSPAPPSPRHAPPRCLSPLLMPPRRIDRSNSLVESSSGAGPLSPGAGAAVSALGALQPDLYTKREAPLVIELEGLGPSLGRLHLRLKYDFDRSDLEVHLIEAHDLAGYEAGGFNDPYVRVSLLPEVDTRVRQTPVHRNEANPFFDQHFKFPVSHDELSDKTLLLQVFDYDRFSRNEVMGSAKVPLSRVEVAGGAEVWAELSRERRPPEELQELLLSLSYLPSAERLTVVVLKARNLLPPQEGKEALDVYVKVYLLVNGKRVKKKKTNRKEINNPVWNEALSFSLPSANLQEASIEVKSRLTKLLTSLHST

Uniprot

H9IUE1   A0A194PCW4   A0A194R3Z7   A0A212EZC0   A0A2W1BU81   A0A3S2NZR2   + More
A0A0L7L5K3   E0VXY2   D2A329   A0A2J7RFQ0   A0A1B6LUW7   A0A067QWZ2   A0A158NPE0   A0A1B6DJE7   F4WH81   A0A3L8DVX7   A0A0C9QRV7   A0A195F4E5   A0A195BA92   A0A1D2NBN5   A0A151X647   A0A026WCH7   U4UDV1   E2ADV3   N6TQH8   K7IYD4   A0A1B0CM95   A0A0L7QK64   A0A0M9A1B5   N6T7N0   N6U549   T1GH69   E2B7Z2   A0AVU5   A0A0M4EB54   A0A0R1DXS8   A0A0Q5U5L0   A0A0J9RV83   A0A1I8NHN7   Q9VUJ6   A0A0J9RVB1   B4HI29   B4PIJ5   Q9VUJ3   B3NHK9   A0A1W4U9M7   A0A1A9WE84   A0A1W4UL14   A0A0R3P7E6   A0A0Q9WP83   A0A226D3U6   A0A3B0J364   B4GUG5   Q2M189   A0A1B0GD02   A0A0L0BKM0   B4MLX1   A0A0P8YBU1   A0A0Q9XP60   B3M7J3   A0A1A9US25   B4KX70   B4J2Y7   A0A1I8PR89   A0A0Q9WJB2   B4LFJ5   A0A336L2E9   A0A1B0D107   A0A151IH44   T1HAI5   A0A1B0AJD1   A0A1B0BAT3   A0A1J1IPE2  

Pubmed

19121390    26354079    22118469    28756777    26227816    20566863    + More
18362917    19820115    24845553    21347285    21719571    30249741    27289101    24508170    23537049    20798317    20075255    17994087    17550304    22936249    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    23185243    26108605    18057021   

EMBL

BABH01001196    KQ459606    KPI91156.1    KQ460947    KPJ10561.1    AGBW02011306    + More
OWR46849.1    KZ149946    PZC76757.1    RSAL01000080    RVE48665.1    JTDY01002849    KOB70606.1    DS235842    EEB18238.1    KQ971338    EFA01962.2    NEVH01004410    PNF39650.1    GEBQ01012503    JAT27474.1    KK852917    KDR13859.1    ADTU01022401    GEDC01021078    GEDC01012047    GEDC01011558    JAS16220.1    JAS25251.1    JAS25740.1    GL888153    EGI66447.1    QOIP01000003    RLU24506.1    GBYB01006469    JAG76236.1    KQ981836    KYN35047.1    KQ976542    KYM81145.1    LJIJ01000101    ODN02651.1    KQ982482    KYQ55856.1    KK107273    EZA53777.1    KB632278    ERL91232.1    GL438820    EFN68465.1    APGK01010179    APGK01010180    KB738136    ENN82759.1    AJWK01018412    AJWK01018413    AJWK01018414    AJWK01018415    AJWK01018416    AJWK01018417    AJWK01018418    AJWK01018419    AJWK01018420    AJWK01018421    KQ415028    KOC58911.1    KQ435794    KOX73873.1    APGK01049293    APGK01049294    APGK01049295    KB741147    ENN73693.1    APGK01049284    APGK01049285    APGK01049286    ENN73692.1    CAQQ02057471    GL446268    EFN88177.1    BT029263    ABK30900.1    CP012525    ALC44616.1    CM000159    KRK01910.1    CH954178    KQS43977.1    CM002912    KMY99651.1    KMY99652.1    AE014296    BT133101    AAF49680.2    AEX98021.1    KMY99653.1    CH480815    EDW41525.1    EDW94552.1    AAF49683.1    EDV51804.1    CH379069    KRT07541.1    CH963847    KRF97701.1    LNIX01000042    OXA38926.1    OUUW01000002    SPP76024.1    CH479191    EDW26248.1    EAL30686.1    KRT07538.1    KRT07539.1    KRT07540.1    CCAG010002253    JRES01001711    KNC20626.1    EDW73182.1    CH902618    KPU78848.1    CH933809    KRG06766.1    EDV40921.1    EDW19713.1    KRG06763.1    KRG06764.1    KRG06765.1    CH916366    EDV97157.1    CH940647    KRF84845.1    EDW70313.1    UFQS01001374    UFQT01001374    SSX10563.1    SSX30247.1    AJVK01010168    AJVK01010169    KQ977643    KYN00862.1    ACPB03018544    JXJN01011142    CVRI01000054    CRL00361.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000283053    UP000037510    + More
UP000009046    UP000007266    UP000235965    UP000027135    UP000005205    UP000007755    UP000279307    UP000078541    UP000078540    UP000094527    UP000075809    UP000053097    UP000030742    UP000000311    UP000019118    UP000002358    UP000092461    UP000053825    UP000053105    UP000015102    UP000008237    UP000092553    UP000002282    UP000008711    UP000095301    UP000000803    UP000001292    UP000192221    UP000091820    UP000001819    UP000007798    UP000198287    UP000268350    UP000008744    UP000092444    UP000037069    UP000007801    UP000009192    UP000078200    UP000001070    UP000095300    UP000008792    UP000092462    UP000078542    UP000015103    UP000092445    UP000092460    UP000183832   

PRIDE

H9IUE1    A0AVU5    Q9VUJ6    Q9VUJ3   

Pfam

PF00168   C2

Interpro

IPR000008   C2_dom        + More
IPR035892   C2_domain_sf       
IPR001565   Synaptotagmin       

Gene 3D

2.60.40.150    

ProteinModelPortal

H9IUE1   A0A194PCW4   A0A194R3Z7   A0A212EZC0   A0A2W1BU81   A0A3S2NZR2   + More
A0A0L7L5K3   E0VXY2   D2A329   A0A2J7RFQ0   A0A1B6LUW7   A0A067QWZ2   A0A158NPE0   A0A1B6DJE7   F4WH81   A0A3L8DVX7   A0A0C9QRV7   A0A195F4E5   A0A195BA92   A0A1D2NBN5   A0A151X647   A0A026WCH7   U4UDV1   E2ADV3   N6TQH8   K7IYD4   A0A1B0CM95   A0A0L7QK64   A0A0M9A1B5   N6T7N0   N6U549   T1GH69   E2B7Z2   A0AVU5   A0A0M4EB54   A0A0R1DXS8   A0A0Q5U5L0   A0A0J9RV83   A0A1I8NHN7   Q9VUJ6   A0A0J9RVB1   B4HI29   B4PIJ5   Q9VUJ3   B3NHK9   A0A1W4U9M7   A0A1A9WE84   A0A1W4UL14   A0A0R3P7E6   A0A0Q9WP83   A0A226D3U6   A0A3B0J364   B4GUG5   Q2M189   A0A1B0GD02   A0A0L0BKM0   B4MLX1   A0A0P8YBU1   A0A0Q9XP60   B3M7J3   A0A1A9US25   B4KX70   B4J2Y7   A0A1I8PR89   A0A0Q9WJB2   B4LFJ5   A0A336L2E9   A0A1B0D107   A0A151IH44   T1HAI5   A0A1B0AJD1   A0A1B0BAT3   A0A1J1IPE2  

PDB

2R83     E-value=1.39825e-28,     Score=315

KEGG

101742641    no KO assigned | (RefSeq) synaptotagmin-5

GO

GO:0016020   GO:0016021   GO:0016192   GO:0017158   GO:0017156   GO:0071277   GO:0000149   GO:0001786   GO:0005886   GO:0030276   GO:0070382   GO:0005509   GO:0005544   GO:0019905   GO:0014059   GO:0008021   GO:0016079   GO:0005515   GO:0045329   GO:0050353   GO:0016491   GO:0016573   GO:0008270   GO:0022891   GO:0003707   GO:0051537  

Length:

465

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00116

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00029

outside

1  -  465

 

 

Pi

182.328043

Theta

166.64067

Tajima's D

0.705185

CLR

0.355915

CSRT

0.564871756412179

Interpretation

Uncertain