Gene

KWMTBOMO07700

Pre Gene Modal

BGIBMGA001273

Annotation

PREDICTED:_trimethyllysine_dioxygenase?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr13(-):4748505-4758430      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.496

CDS

ATGGAATTCAGTGTCGGATTCAATGAAAACAGTGCGAAAAAAATAGAAAACGTCATCTTTGTTGAGAGAACGGTACGTGTGAACTTCGAGAATGGCCCTTCGATTCCCTTTGAAGACTGTTGGCTCAGAGACCATTGCAGATGTTCACAATGCTATCACGCGAATACGTTCCAGAGAGCTAAACACATTTTAGAACTGCCCGATTCGAAGATACTTACATTACAATTCGATAAGAACAGTCTAACAATTGAATGGGACGATAAGCACACTACAGAATTCAAAGCGGACTTTCTGTCGCAATTCGATTATAAAACTTGGAAAAACAATCGCAGATTGAAGCCTAGATTGTGGCGCGGCTGTAACGTTGCTGATAGAATAGCTAAAGTACACGTTGATGAGTTTCTTGACTCTGACGACAGTTCAAAGGAAGTATTTCAATCGCTTCTTGACTATGGCGTTGCCTTTATAACTGGTGTGCAACCAAGCGCGGAAGCTACAGAAACAGTGTGCAAAGCTTTAGGAGGAATTCAACACACTATTTTTGGTGCTACGTGGGAATTCACCACAGTTGCTGATCACGCCGACACGGCCTATACCAATCTACCTTTGGCTGCGCACAATGATAATATTTATTGGACTGAAGCGGCTGGCCTCCAAATCCTTCACTGCATAGAACATACAAACGGTACGGGCGGTGAAACTATTCTTGTTGACGGCTTCTACGGAGCGACTTGTCTGAAGGAAGATCACCCGGAGGATTATGAATTCCTAACAACATACGAGATTGAGGGCGAATATATAGAACGTCGTCATCATTTCACGCATAGCGCACCTGTTATCCAAATCGACAAGAATACTGAAGACATTAAACAAATAAGATTCAATGTATACGATAGATCAGCTATGGCATTCAGGAGTGGCAGGGACTGTCGGCTCTACTATCGTTCCTTGAAAAATCTAGCTCGGTATTACGAAAATAAGGAAAACCAATGGATATTCAAATTAGTTCCAGGTCTTGTGATGGTAATAGACAACTTCAGATTGCTTCACGGTAGAAACGGTTTCACTGGAAGGCGGGTGCTGTGCGGTGCGTATGTGTCGCGCTCTGACTGGCTGGACAAAGCTCGGTCGTTAAATCTCATTCAATAA

Protein

MEFSVGFNENSAKKIENVIFVERTVRVNFENGPSIPFEDCWLRDHCRCSQCYHANTFQRAKHILELPDSKILTLQFDKNSLTIEWDDKHTTEFKADFLSQFDYKTWKNNRRLKPRLWRGCNVADRIAKVHVDEFLDSDDSSKEVFQSLLDYGVAFITGVQPSAEATETVCKALGGIQHTIFGATWEFTTVADHADTAYTNLPLAAHNDNIYWTEAAGLQILHCIEHTNGTGGETILVDGFYGATCLKEDHPEDYEFLTTYEIEGEYIERRHHFTHSAPVIQIDKNTEDIKQIRFNVYDRSAMAFRSGRDCRLYYRSLKNLARYYENKENQWIFKLVPGLVMVIDNFRLLHGRNGFTGRRVLCGAYVSRSDWLDKARSLNLIQ

Uniprot

A0A2H1W362   A0A2A4IYX8   A0A2W1BNY7   A0A212EQS3   A0A194R3Y5   E0W3Z1   + More
A0A2J7PIE2   A0A1W4VAC9   A0A0P8XDL4   Q4V6C2   Q9VDM7   A0A067RHL2   A0A3B0JK47   A0A2M4AUV5   B4PP89   B4NFY2   B3NYY8   Q7Q783   B4G3E3   B4QS38   A0A2C9GQR7   A0A1A9V187   A0A182H2U4   A0A1A9X281   Q298C1   W5JCZ6   A0A182P3E3   A0A1B0GAW2   B4JXU3   A0A1A9WXT9   A0A084VDL8   B4IIC8   A0A034WQ21   A0A182FHS4   A0A1B0CUK0   A0A1A9YHK4   A0A0K8UBI8   A0A1B0C5L4   W8BX80   B4K7S6   A0A1B0A855   B4LVR9   A0A182UY60   A0A182Y0T1   A0A182LJR7   A0A182SDK9   Q16V01   A0A182IYB6   A0A182TCU2   A0A1I8P1R2   A0A182XCT9   A0A336LY45   A0A1W4X4U9   A0A0L0CG61   T1P8F3   A0A182K094   A0A1I8NH67   A0A182NMB1   A0A182RC05   A0A182QT31   A0A1Q3G1R0   A0A1B6EFC3   A0A182WLW0   K1QTC9   Q4V6P2   A0A0M5J2K7   B5X2I0   A0A1Y1MIG2   A7SLB9   A0A3N0XVV5   A0A060WTM1   A0A1S3RJJ3   A0A1Y1MIC5   A0A3M6UGA4   E9GXY5   A0A1S3L087   A0A1S3L1E6   A0A1B6I818   A0A167R729   A0A3Q7VS44   A0A3P9N6H8   A0A2Y9GJX7   E7F0M9   W5N8E5   G1SVM2   A0A3B0KA97   M3YXG0   A0A2U3XZW7   A0A3P9N6H4   B0WYB5   U6CRA1   D2I4U4   A0A3Q7NEI3   A0A2Y9IEH9   A0A2U3X1X8   A0A1U7STW9   A0A087YMJ4  

Pubmed

28756777    22118469    26354079    20566863    17994087    10731132    + More
12537568    12537572    12537573    12537574    16110336    17569856    17569867    24845553    17550304    12364791    26483478    15632085    20920257    23761445    24438588    25348373    24495485    25244985    20966253    17510324    26108605    25315136    22992520    20433749    28004739    17615350    24755649    30382153    21292972    26659563    23594743    21993624    20010809   

EMBL

ODYU01006015    SOQ47488.1    NWSH01004513    PCG65025.1    KZ149946    PZC76762.1    + More
AGBW02013240    OWR43840.1    KQ460947    KPJ10551.1    DS235885    EEB20347.1    NEVH01025127    PNF16084.1    CH902623    KPU72769.1    BT022384    AAY54800.1    AE014297    AAF55763.1    KK852463    KDR23351.1    OUUW01000007    SPP82595.1    GGFK01011248    MBW44569.1    CM000160    EDW96128.1    CH964251    EDW83199.1    CH954181    EDV48391.1    AAAB01008960    EAA11960.4    CH479179    EDW24325.1    CM000364    EDX12234.1    JXUM01105999    KQ565014    KXJ71440.1    CM000070    EAL28034.2    ADMH02001518    ETN62222.1    CCAG010014940    CH916377    EDV90505.1    ATLV01011630    KE524705    KFB36062.1    CH480842    EDW49672.1    GAKP01002505    JAC56447.1    AJWK01029292    GDHF01031068    GDHF01028305    JAI21246.1    JAI24009.1    JXJN01026063    GAMC01008659    JAB97896.1    CH933806    EDW16447.1    CH940650    EDW67524.1    CH477607    EAT38365.1    UFQT01000177    SSX21187.1    JRES01000438    KNC31240.1    KA645001    AFP59630.1    AXCN02000936    GFDL01001313    JAV33732.1    GEDC01000671    JAS36627.1    JH815999    EKC24856.1    BT022264    AAY54680.1    CP012526    ALC47511.1    BT045249    ACI33511.1    GEZM01030645    JAV85451.1    DS469697    EDO35490.1    RJVU01059915    ROJ62483.1    FR904732    CDQ70703.1    GEZM01030637    JAV85464.1    RCHS01001596    RMX52683.1    GL732574    EFX75501.1    GECU01024659    JAS83047.1    KV417269    KZP00626.1    CR792441    AHAT01007388    SPP82596.1    AEYP01096475    AEYP01096476    AEYP01096477    AEYP01096478    DS232186    EDS36992.1    HAAF01001359    CCP73185.1    ACTA01108118    ACTA01116118    ACTA01124118    ACTA01132118    ACTA01140118    ACTA01148117    ACTA01156116    ACTA01164115    ACTA01172113    ACTA01180111    GL194550    EFB20721.1    AYCK01001996   

Proteomes

UP000218220    UP000007151    UP000053240    UP000009046    UP000235965    UP000192221    + More
UP000007801    UP000000803    UP000027135    UP000268350    UP000002282    UP000007798    UP000008711    UP000007062    UP000008744    UP000000304    UP000078200    UP000069940    UP000249989    UP000091820    UP000001819    UP000000673    UP000075885    UP000092444    UP000001070    UP000030765    UP000001292    UP000069272    UP000092461    UP000092443    UP000092460    UP000009192    UP000092445    UP000008792    UP000075903    UP000076408    UP000075882    UP000075901    UP000008820    UP000075880    UP000075902    UP000095300    UP000076407    UP000192223    UP000037069    UP000075881    UP000095301    UP000075884    UP000075900    UP000075886    UP000075920    UP000005408    UP000092553    UP000001593    UP000193380    UP000087266    UP000275408    UP000000305    UP000076738    UP000286642    UP000242638    UP000248481    UP000000437    UP000018468    UP000001811    UP000000715    UP000245341    UP000002320    UP000008912    UP000286641    UP000248482    UP000245340    UP000189704    UP000028760   

PRIDE

Q4V6C2    Q9VDM7    Q4V6P2   

Pfam

PF06155   DUF971        + More
PF02668   TauD
PF05485   THAP
PF02351   GDNF

Interpro

IPR010376   GBH-like_N        + More
IPR042098   TauD-like_sf       
IPR038492   GBBH-like_N_sf       
IPR003819   TauD/TfdA-like       
IPR012776   Trimethyllysine_dOase       
IPR006612   THAP_Znf       
IPR038441   THAP_Znf_sf       
IPR016017   GDNF/GAS1       
IPR003438   GDNF_rcpt       
IPR037193   GDNF_alpha       

SUPFAM

SSF110035   SSF110035       

Gene 3D

3.30.2020.30     3.60.130.10     3.30.40.180    

ProteinModelPortal

A0A2H1W362   A0A2A4IYX8   A0A2W1BNY7   A0A212EQS3   A0A194R3Y5   E0W3Z1   + More
A0A2J7PIE2   A0A1W4VAC9   A0A0P8XDL4   Q4V6C2   Q9VDM7   A0A067RHL2   A0A3B0JK47   A0A2M4AUV5   B4PP89   B4NFY2   B3NYY8   Q7Q783   B4G3E3   B4QS38   A0A2C9GQR7   A0A1A9V187   A0A182H2U4   A0A1A9X281   Q298C1   W5JCZ6   A0A182P3E3   A0A1B0GAW2   B4JXU3   A0A1A9WXT9   A0A084VDL8   B4IIC8   A0A034WQ21   A0A182FHS4   A0A1B0CUK0   A0A1A9YHK4   A0A0K8UBI8   A0A1B0C5L4   W8BX80   B4K7S6   A0A1B0A855   B4LVR9   A0A182UY60   A0A182Y0T1   A0A182LJR7   A0A182SDK9   Q16V01   A0A182IYB6   A0A182TCU2   A0A1I8P1R2   A0A182XCT9   A0A336LY45   A0A1W4X4U9   A0A0L0CG61   T1P8F3   A0A182K094   A0A1I8NH67   A0A182NMB1   A0A182RC05   A0A182QT31   A0A1Q3G1R0   A0A1B6EFC3   A0A182WLW0   K1QTC9   Q4V6P2   A0A0M5J2K7   B5X2I0   A0A1Y1MIG2   A7SLB9   A0A3N0XVV5   A0A060WTM1   A0A1S3RJJ3   A0A1Y1MIC5   A0A3M6UGA4   E9GXY5   A0A1S3L087   A0A1S3L1E6   A0A1B6I818   A0A167R729   A0A3Q7VS44   A0A3P9N6H8   A0A2Y9GJX7   E7F0M9   W5N8E5   G1SVM2   A0A3B0KA97   M3YXG0   A0A2U3XZW7   A0A3P9N6H4   B0WYB5   U6CRA1   D2I4U4   A0A3Q7NEI3   A0A2Y9IEH9   A0A2U3X1X8   A0A1U7STW9   A0A087YMJ4  

PDB

4CWD     E-value=4.21917e-31,     Score=336

KEGG

101743938    K00474 trimethyllysine dioxygenase [EC:1.14.11.8] | (RefSeq) trimethyllysine dioxygenase, mitochondr

PATHWAY

00310    Lysine degradation - Bombyx mori (domestic silkworm)

GO

GO:0005506   GO:0050353   GO:0045329   GO:0005739   GO:0016702   GO:0003677   GO:0016491   GO:0038023   GO:0051213   GO:0031418   GO:0016573   GO:0008270   GO:0022891   GO:0003707   GO:0051537   GO:0055114  

PANTHER

PTHR10269  

Length:

382

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.11124

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00365

outside

1  -  382

 

 

Pi

19.964456

Theta

169.18961

Tajima's D

-1.867988

CLR

1.494416

CSRT

0.0233988300584971

Interpretation

Uncertain