Gene

KWMTBOMO07689

Annotation

PREDICTED:_DNA-directed_RNA_polymerases_I_and_III_subunit_RPAC2_[Papilio_polytes]

Location

Bomo_Chr13(-):4414729-4416160      View in EpiBrowser

Full name

Probable DNA-directed RNA polymerases I and III subunit RPAC2      

Alternative Name

AC19
DNA-directed RNA polymerase I subunit D

Location in the cell

Nuclear   Reliability : 2.786

CDS

ATGAACATTTCTGAGCTTCCTGGTGATGACGATTCAGGGCCTACCTGCAGAACATACGTCTTCCGAAATGAAAGCCATACATTAGGGAATTCATTAAAATGTATTATAAACAAATATGATGATGTTGAATTCTGTGGATATACTGTTCCACACCCAGCAGAATCAAAAATGCATTTTAGGATACAAGCCAGAGAAACACCTGCATTGGAAGTTCTAAAAAGAGGTCTGAAAGATCTAGAAATGGTGTGTGATCACACCATAAATTTATTTGACAAAGAAGTGAAAAGATTTAATAAAGTATAG

Protein

MNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDHTINLFDKEVKRFNKV

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common core component of RNA polymerases I and III which synthesize ribosomal RNA precursors and small RNAs, such as 5S rRNA and tRNAs, respectively (By similarity).

Subunit

Component of the RNA polymerase I (Pol I) and RNA polymerase III (Pol III) complexes consisting of at least 13 and 17 subunits, respectively.

Similarity

Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.

Keywords

Complete proteome   DNA-directed RNA polymerase   Nucleus   Reference proteome   Transcription  

Feature

chain  Probable DNA-directed RNA polymerases I and III subunit RPAC2

Uniprot

A0A2H1WSH2   A0A2A4JTZ1   A0A2W1BU93   A0A194QZZ8   A0A212EKK3   S4PPS3   + More
A0A194PJ84   A0A0K8VJF9   A0A034WM32   A0A1I8MFR2   A0A1A9W062   K7J062   A0A1A9V9I4   B4Q9H4   B4I5S3   A0A1B2AKR4   Q9VIZ0   Q29CK4   B4GXE8   A0A232EYL8   A0A1W4W9Y5   A0A0J9R5F3   A0A0L0BQH1   A0A1B0G937   A0A1I8PRU5   A0A1B0A543   D0QWD2   A0A182VLY4   M9PBD6   B4JPA4   B4PAH8   B3NM84   A0A182TK20   A0A182WZE7   Q7PM95   A0A182ICS1   B4KKF8   A0A084WFV7   A0A3B0KGN9   B4M941   M9PG66   A0A0J9TRA3   A0A182Q316   B0W1R5   B3MNN6   A0A182NAY8   D5SHL6   A0A2R7WC94   A0A182PKU4   A0A1Q3FDG6   Q16F80   A0A182JYJ9   A0A182J2Z6   A0A182Y8B7   A0A0Q9WQ70   A0A0A9ZGW8   A0A023EEU1   A0A1S4G2S6   A0A182VTV9   A0A182RGP6   A0A1Y1JWK3   A0A182MW48   T1H6G1   A0A1A9XL21   U5EQX8   A0A1B0B7N8   R4UJ49   A0A023F7V9   A0A0V0GBG2   A0A0N7Z8T4   R4G2Y7   A0A1W4WS37   A0A224XQH4   A0A1B6GBM4   A0A1B6IIK8   A0A0C9RQI1   A0A2P8YUL7   A0A182F5X6   A0A2M4C4B9   A0A2M3ZJV0   A0A2M4AZP1   A0A2M4C4C0   E0W436   A0A1B6L9T7   N6TKN9   W5JCM8   A0A1L8DGF5   A0A0J7NXN7   E2B1J9   A0A067RQ36   A0A1J1HG48   A0A2M4C4U5   V5G8K4   E2AMR2   A0A0M3QVR6   A0A139WJG5   A0A1B0CV71   A0A336L4G1   A0A2G8JP26  

Pubmed

28756777    26354079    22118469    23622113    25348373    25315136    + More
20075255    17994087    10731132    12537572    15632085    28648823    22936249    26108605    19859648    12537568    12537573    12537574    16110336    17569856    17569867    17550304    12364791    14747013    17210077    24438588    17510324    25244985    25401762    26823975    24945155    26483478    28004739    25474469    27129103    29403074    20566863    23537049    20920257    23761445    20798317    24845553    18362917    19820115    29023486   

EMBL

ODYU01010667    SOQ55922.1    NWSH01000677    PCG74862.1    KZ149946    PZC76767.1    + More
KQ460947    KPJ10550.1    AGBW02014249    OWR42017.1    GAIX01000052    JAA92508.1    KQ459606    KPI91145.1    GDHF01013283    JAI39031.1    GAKP01003752    GAKP01003750    JAC55200.1    CM000361    EDX05481.1    CH480822    EDW55729.1    KX531914    ANY27724.1    AE014134    BT028781    CH475456    EAL29383.2    CH479195    EDW27259.1    NNAY01001601    OXU23461.1    CM002910    KMY90954.1    JRES01001517    KNC22297.1    CCAG010004816    FJ821025    ACN94631.1    AGB93098.1    CH916372    EDV98734.1    CM000158    EDW90386.2    CH954179    EDV54684.2    AAAB01008980    EAA14103.3    APCN01005755    CH933807    EDW11608.1    ATLV01023406    KE525343    KFB49101.1    OUUW01000010    SPP85519.1    CH940654    EDW57717.1    AGB93097.1    KMY90955.1    AXCN02000651    DS231823    EDS26616.1    CH902620    EDV31123.1    BT124817    ADF87912.1    KK854531    PTY16630.1    GFDL01009429    JAV25616.1    CH478496    CH477860    EAT32892.1    EAT35553.1    CH963852    KRF98241.1    GBHO01000736    GBRD01001519    GBRD01001518    GDHC01014459    GDHC01008123    JAG42868.1    JAG64302.1    JAQ04170.1    JAQ10506.1    JXUM01062279    JXUM01062280    GAPW01006384    KQ562192    JAC07214.1    KXJ76447.1    KXJ76448.1    GEZM01101961    JAV52160.1    AXCM01001667    GANO01003069    JAB56802.1    JXJN01009696    KC632255    AGM32069.1    GBBI01001408    JAC17304.1    GECL01001028    JAP05096.1    GDKW01002459    JAI54136.1    ACPB03026117    GAHY01002171    JAA75339.1    GFTR01001671    JAW14755.1    GECZ01009947    JAS59822.1    GECU01020942    JAS86764.1    GBYB01009476    JAG79243.1    PYGN01000350    PSN47949.1    GGFJ01011021    MBW60162.1    GGFM01008031    MBW28782.1    GGFK01012926    MBW46247.1    GGFJ01011019    MBW60160.1    DS235886    EEB20392.1    GEBQ01019495    JAT20482.1    APGK01020739    KB740234    KB632149    ENN81004.1    ERL89117.1    ADMH02001884    ETN60635.1    GFDF01008573    JAV05511.1    LBMM01000942    KMQ97175.1    GL444934    EFN60456.1    KK852497    KDR22715.1    CVRI01000003    CRK87005.1    GGFJ01011020    MBW60161.1    GALX01008117    JAB60349.1    GL440872    EFN65277.1    CP012525    ALC42869.1    KQ971338    KYB28052.1    AJWK01030161    UFQS01001813    UFQT01001813    SSX12430.1    SSX31881.1    MRZV01001489    PIK37516.1   

Proteomes

UP000218220    UP000053240    UP000007151    UP000053268    UP000095301    UP000091820    + More
UP000002358    UP000078200    UP000000304    UP000001292    UP000000803    UP000001819    UP000008744    UP000215335    UP000192221    UP000037069    UP000092444    UP000095300    UP000092445    UP000075903    UP000001070    UP000002282    UP000008711    UP000075902    UP000076407    UP000007062    UP000075840    UP000009192    UP000030765    UP000268350    UP000008792    UP000075886    UP000002320    UP000007801    UP000075884    UP000075885    UP000008820    UP000075881    UP000075880    UP000076408    UP000007798    UP000069940    UP000249989    UP000075920    UP000075900    UP000075883    UP000015102    UP000092443    UP000092460    UP000015103    UP000192223    UP000245037    UP000069272    UP000009046    UP000019118    UP000030742    UP000000673    UP000036403    UP000000311    UP000027135    UP000183832    UP000092553    UP000007266    UP000092461    UP000230750   

PRIDE

Q9VIZ0   

Pfam

PF13656   RNA_pol_L_2        + More
PF02668   TauD
PF01000   RNA_pol_A_bac
PF01193   RNA_pol_L
PF00069   Pkinase

Interpro

IPR036603   RBP11-like        + More
IPR033898   RNAP_AC19       
IPR008193   RNA_pol_Rpb11_13-16kDa_CS       
IPR009025   RBP11-like_dimer       
IPR003819   TauD/TfdA-like       
IPR042098   TauD-like_sf       
IPR011263   DNA-dir_RNA_pol_RpoA/D/Rpb3       
IPR011262   DNA-dir_RNA_pol_insert       
IPR036643   RNApol_insert_sf       
IPR001514   DNA-dir_RNA_pol_30-40kDasu_CS       
IPR017441   Protein_kinase_ATP_BS       
IPR011009   Kinase-like_dom_sf       
IPR000719   Prot_kinase_dom       

SUPFAM

SSF55257   SSF55257        + More
SSF56553   SSF56553       
SSF56112   SSF56112       

Gene 3D

3.30.1360.10     3.60.130.10     2.170.120.12    

CDD

cd07029  RNAP_I_III_AC19

ProteinModelPortal

A0A2H1WSH2   A0A2A4JTZ1   A0A2W1BU93   A0A194QZZ8   A0A212EKK3   S4PPS3   + More
A0A194PJ84   A0A0K8VJF9   A0A034WM32   A0A1I8MFR2   A0A1A9W062   K7J062   A0A1A9V9I4   B4Q9H4   B4I5S3   A0A1B2AKR4   Q9VIZ0   Q29CK4   B4GXE8   A0A232EYL8   A0A1W4W9Y5   A0A0J9R5F3   A0A0L0BQH1   A0A1B0G937   A0A1I8PRU5   A0A1B0A543   D0QWD2   A0A182VLY4   M9PBD6   B4JPA4   B4PAH8   B3NM84   A0A182TK20   A0A182WZE7   Q7PM95   A0A182ICS1   B4KKF8   A0A084WFV7   A0A3B0KGN9   B4M941   M9PG66   A0A0J9TRA3   A0A182Q316   B0W1R5   B3MNN6   A0A182NAY8   D5SHL6   A0A2R7WC94   A0A182PKU4   A0A1Q3FDG6   Q16F80   A0A182JYJ9   A0A182J2Z6   A0A182Y8B7   A0A0Q9WQ70   A0A0A9ZGW8   A0A023EEU1   A0A1S4G2S6   A0A182VTV9   A0A182RGP6   A0A1Y1JWK3   A0A182MW48   T1H6G1   A0A1A9XL21   U5EQX8   A0A1B0B7N8   R4UJ49   A0A023F7V9   A0A0V0GBG2   A0A0N7Z8T4   R4G2Y7   A0A1W4WS37   A0A224XQH4   A0A1B6GBM4   A0A1B6IIK8   A0A0C9RQI1   A0A2P8YUL7   A0A182F5X6   A0A2M4C4B9   A0A2M3ZJV0   A0A2M4AZP1   A0A2M4C4C0   E0W436   A0A1B6L9T7   N6TKN9   W5JCM8   A0A1L8DGF5   A0A0J7NXN7   E2B1J9   A0A067RQ36   A0A1J1HG48   A0A2M4C4U5   V5G8K4   E2AMR2   A0A0M3QVR6   A0A139WJG5   A0A1B0CV71   A0A336L4G1   A0A2G8JP26  

PDB

6HLS     E-value=5.83592e-14,     Score=181

KEGG

101744943    K03020 DNA-directed RNA polymerases I and III subunit RPAC2 | (RefSeq) probable DNA-directed RNA pol

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0003677   GO:0046983   GO:0003899   GO:0006351   GO:0051213   GO:0005736   GO:0005666   GO:0006360   GO:0006383   GO:0016021   GO:0004674   GO:0005524   GO:0035556   GO:0006468   GO:0005737   GO:0005634   GO:0015935   GO:0016573   GO:0008270   GO:0022891   GO:0003707   GO:0051537  

Subcellular location

Nucleus  

Length:

100

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.12179

outside

1  -  100

 

 

Pi

187.177968

Theta

164.525884

Tajima's D

0.433006

CLR

0.199134

CSRT

0.491075446227689

Interpretation

Uncertain