Gene

KWMTBOMO07688  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000867

Annotation

ribosomal_protein_S2_[Bombyx_mori]

Location

Bomo_Chr13(+):4412111-4413536      View in EpiBrowser

Full name

40S ribosomal protein S2      

Alternative Name

Protein strings of pearls

Location in the cell

Cytoplasmic   Reliability : 1.328 Mitochondrial   Reliability : 1.137 Nuclear   Reliability : 1.14

CDS

ATGGCGGACGCTGCTCCAGCCGGTGGACGTGGCGGTTTTCGCGGCGGATTCGGATCACGCGGTGGAGATAGAGGCCGTGGCGGTCCTCGTGGACGCGGTCGTGGTCGCGGCCGTGGTCGTGGGCGCGGCAAGGAAGACCAGAAAGAGTGGGTTCCTGTCACCAAACTCGGCCGTCTTGTTCGCGAAGGAAAAATCGACAAACTCGAGAGCATTTACTTGTTTTCTTTACCAATCAAAGAATTCGAGATCATTGATTTCTTCCTCGGCCCGTCCCTGAATGATGAGGTTCTTAAGATCATGCCTGTACAGAAACAAACACGTGCCGGACAGCGCACACGTTTCAAGGCATTTGTTGCCATTGGCGACAACAACGGTCATATTGGTTTGGGTGTGAAGTGCAGCAAGGAAGTCGCCACTGCCATTCGAGGCGCTATTATCCTTGCTAAGCTGTCAGTTCTACCAGTCCGAAGAGGTTACTGGGGTAACAAGATAGGAAAGCCACACACCGTCCCTTGCAAGGTCACCGGCAAGTGTGGTTCCGTAACAGTCCGGCTGATTCCTGCCCCTCGTGGTACTGGTATTGTGTCTGCGCCAGTTCCTAAGAAGCTTCTTCAGATGGCTGGTGTACAGGATTGCTACACGTCAGCTCGTGGTTCAACTGGCACCTTGGGAAATTTTGCTAAAGCCACATACGCTGCCATTGCCAAGACATATGCCTACCTCACTCCTGACTTGTGGAGGGATATCCCGCTGACTAAGTCTCCATACTCAGAGTTCAAAGTCTAA

Protein

MADAAPAGGRGGFRGGFGSRGGDRGRGGPRGRGRGRGRGRGRGKEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWRDIPLTKSPYSEFKV

Description

Has a specific developmental role during oogenesis and a general role in protein synthesis as a component of the small ribosomal subunit.

Similarity

Belongs to the universal ribosomal protein uS5 family.

Keywords

3D-structure   Complete proteome   Developmental protein   Differentiation   Oogenesis   Phosphoprotein   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  40S ribosomal protein S2

Uniprot

A0A343EU16   A0A3G1T1G4   Q5UAP3   A0A3S2TBV5   D1LYR3   A0A2W1BP75   + More
A0A2A4JS78   Q8I865   A0A0L7KUQ6   G0ZEA8   S4PWY6   A0A212EKP3   I4DMS0   A0A194QZ40   Q6EV29   I4DIK5   E7DYY9   D2A013   G3CJR0   T1HZ67   V5GXP5   A0A161MKY8   C4WSI2   A0A023F9B5   A0A069DRR8   R4G8Z8   A0A2H8TQK3   A0A0A9YUP8   A0A0X7YAT2   A0A146KT55   A0A0K8SGG0   A0A146KZF6   A0A0P4VNH5   A0A1L8EF19   A0A1L8EHU2   T1P7I6   A0A2R7WKA0   A0A1I8Q342   A0A1B2M4Y2   A0A224XUF8   A0A0V0G2M5   R4WQI5   A0A2J7Q4Z1   U5ETQ6   A0A1L8DSJ0   A0A1B0GLM7   A0A067RFT4   A0A0L0C0V2   A0A1B0DK98   A0A1Y1LFL5   A0A232FBH4   K7J063   B4KJE0   A0A0M4E6S8   Q0PXW7   J3JW45   Q56FF2   A0A3B0KKH6   B4JE34   N6TRM0   A0A0K8TPH6   B3MP17   M9PB84   P31009   E0VVV6   B4LRC7   W8B604   A0A0K8WB71   A0A034W219   A0A0A1XAJ7   A0A0K8UFM7   Q6XIL7   Q29ND6   B4G7W2   B3N8J4   A0A1W4W8U4   A0A1B6DNA1   B4HWB7   B4Q889   A0A151XAJ3   A0A1L8DS48   A0A1A9W9J1   B4MZD1   A0A0C9REP5   A0A1B0AMN5   A0A1B0AL92   A0A1A9YHE1   A0A1A9UY19   D3TQI9   E2RZJ1   D3TQI6   A0A1B0AHB9   A0A195DXQ4   A0A195FF78   A0A158NGM6   A0A1L8EHZ8   F4WZV4   A0A151X9E1   F4X861   A0A195BGA6  

Pubmed

19121390    28756777    26227816    23622113    22118469    22651552    + More
26354079    18362917    19820115    21058630    25474469    26334808    25401762    26823975    27129103    25315136    23691247    24845553    26108605    28004739    28648823    20075255    17994087    22516182    23537049    26369729    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    8441641    7982558    12537569    18327897    23636399    20566863    24495485    25348373    25830018    14525923    17550304    15632085    22936249    20353571    21347285    21719571   

EMBL

MF067289    ASM61887.1    MG992365    AXY94803.1    BABH01001239    AY769315    + More
AAV34857.1    RSAL01000576    RVE41371.1    GU084337    ACY95370.1    KZ149946    PZC76768.1    NWSH01000677    PCG74861.1    AY161272    ODYU01010667    AAN86048.1    SOQ55923.1    JTDY01005587    KOB66855.1    JF264986    AEL28817.1    GAIX01005973    JAA86587.1    AGBW02014249    OWR42018.1    AK402588    BAM19210.1    KQ460947    KPJ10549.1    AJ783758    CAH04121.1    AK401123    KQ459606    BAM17745.1    KPI91144.1    HQ424692    ADT80636.1    KQ971338    EFA01765.1    HP639827    AEM97964.1    ACPB03024846    GALX01003343    JAB65123.1    GEMB01000105    JAS03006.1    ABLF02040017    AK340199    BAH70852.1    GBBI01000621    JAC18091.1    GBGD01002528    JAC86361.1    GAHY01000097    JAA77413.1    GFXV01004668    MBW16473.1    GBHO01007685    JAG35919.1    KC507299    AHB12422.1    GDHC01019111    JAP99517.1    GBRD01013445    JAG52381.1    GDHC01016886    JAQ01743.1    GDKW01002103    JAI54492.1    GFDG01001487    JAV17312.1    GFDG01000561    JAV18238.1    KA644511    AFP59140.1    KK854966    PTY19998.1    KX447598    AOA60265.1    GFTR01004366    JAW12060.1    GECL01003759    JAP02365.1    AK417946    BAN21161.1    NEVH01018372    PNF23651.1    GANO01002678    JAB57193.1    GFDF01004774    JAV09310.1    AJWK01005695    KK852497    KDR22716.1    JRES01001056    KNC25948.1    AJVK01006395    GEZM01057095    JAV72449.1    NNAY01000467    OXU28171.1    CH933807    EDW12515.1    CP012523    ALC38327.1    DQ673419    ABG81992.1    BT127463    AEE62425.1    AY961548    AAX62450.1    OUUW01000010    SPP85651.1    CH916368    EDW03554.1    APGK01054630    KB741250    KB632390    ENN71910.1    ERL94479.1    GDAI01001344    JAI16259.1    CH902620    EDV31183.1    AE014134    AGB92838.1    AHN54299.1    U01334    U01335    X69120    AY094799    DS235815    EEB17512.1    CH940649    EDW64597.1    GAMC01009985    JAB96570.1    GDHF01003871    JAI48443.1    GAKP01010565    JAC48387.1    GBXI01006346    JAD07946.1    GDHF01026865    JAI25449.1    AY231813    CM000157    AAR09836.1    EDW88696.1    CH379060    EAL33406.1    CH479180    EDW28460.1    CH954177    EDV58417.1    GEDC01010163    JAS27135.1    CH480818    EDW52312.1    CM000361    CM002910    EDX04411.1    KMY89349.1    KQ982339    KYQ57359.1    GFDF01004776    JAV09308.1    CH963913    EDW77404.1    GBYB01006795    GBYB01009996    JAG76562.1    JAG79763.1    JXJN01000507    JXJN01030498    CCAG010023315    EZ423691    ADD19967.1    AB568463    BAJ23427.1    EZ423688    ADD19964.1    KQ980107    KYN17611.1    KQ981625    KYN39043.1    ADTU01015146    GFDG01000553    JAV18246.1    GL888480    EGI60244.1    KQ982373    KYQ57005.1    GL888932    EGI57196.1    KQ976500    KYM83190.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000037510    UP000007151    UP000053240    + More
UP000053268    UP000007266    UP000015103    UP000007819    UP000095301    UP000095300    UP000235965    UP000092461    UP000027135    UP000037069    UP000092462    UP000215335    UP000002358    UP000009192    UP000092553    UP000079169    UP000268350    UP000001070    UP000019118    UP000030742    UP000007801    UP000000803    UP000009046    UP000008792    UP000002282    UP000001819    UP000008744    UP000008711    UP000192221    UP000001292    UP000000304    UP000075809    UP000091820    UP000007798    UP000092460    UP000092443    UP000078200    UP000092444    UP000092445    UP000078492    UP000078541    UP000005205    UP000007755    UP000078540   

PRIDE

Q5UAP3    M9PB84    P31009   

Pfam

PF03719   Ribosomal_S5_C        + More
PF00333   Ribosomal_S5

Interpro

IPR014721   Ribosomal_S5_D2-typ_fold_subgr        + More
IPR005711   Ribosomal_S5_euk/arc       
IPR013810   Ribosomal_S5_N       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR018192   Ribosomal_S5_N_CS       
IPR005324   Ribosomal_S5_C       
IPR000851   Ribosomal_S5       

SUPFAM

SSF54211   SSF54211       

Gene 3D

3.30.230.10    

ProteinModelPortal

A0A343EU16   A0A3G1T1G4   Q5UAP3   A0A3S2TBV5   D1LYR3   A0A2W1BP75   + More
A0A2A4JS78   Q8I865   A0A0L7KUQ6   G0ZEA8   S4PWY6   A0A212EKP3   I4DMS0   A0A194QZ40   Q6EV29   I4DIK5   E7DYY9   D2A013   G3CJR0   T1HZ67   V5GXP5   A0A161MKY8   C4WSI2   A0A023F9B5   A0A069DRR8   R4G8Z8   A0A2H8TQK3   A0A0A9YUP8   A0A0X7YAT2   A0A146KT55   A0A0K8SGG0   A0A146KZF6   A0A0P4VNH5   A0A1L8EF19   A0A1L8EHU2   T1P7I6   A0A2R7WKA0   A0A1I8Q342   A0A1B2M4Y2   A0A224XUF8   A0A0V0G2M5   R4WQI5   A0A2J7Q4Z1   U5ETQ6   A0A1L8DSJ0   A0A1B0GLM7   A0A067RFT4   A0A0L0C0V2   A0A1B0DK98   A0A1Y1LFL5   A0A232FBH4   K7J063   B4KJE0   A0A0M4E6S8   Q0PXW7   J3JW45   Q56FF2   A0A3B0KKH6   B4JE34   N6TRM0   A0A0K8TPH6   B3MP17   M9PB84   P31009   E0VVV6   B4LRC7   W8B604   A0A0K8WB71   A0A034W219   A0A0A1XAJ7   A0A0K8UFM7   Q6XIL7   Q29ND6   B4G7W2   B3N8J4   A0A1W4W8U4   A0A1B6DNA1   B4HWB7   B4Q889   A0A151XAJ3   A0A1L8DS48   A0A1A9W9J1   B4MZD1   A0A0C9REP5   A0A1B0AMN5   A0A1B0AL92   A0A1A9YHE1   A0A1A9UY19   D3TQI9   E2RZJ1   D3TQI6   A0A1B0AHB9   A0A195DXQ4   A0A195FF78   A0A158NGM6   A0A1L8EHZ8   F4WZV4   A0A151X9E1   F4X861   A0A195BGA6  

PDB

4V6W     E-value=9.83908e-102,     Score=943

KEGG

732854    K02981 small subunit ribosomal protein S2e | (RefSeq) RpS2e, RpS2; ribosomal protein S2e

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0015935   GO:0006412   GO:0003735   GO:0005840   GO:0022627   GO:0005730   GO:0000228   GO:0048477   GO:0002181   GO:0022626   GO:0005737   GO:0007275   GO:0016573   GO:0008270   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR13718  

Length:

261

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0611000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03485

outside

1  -  261

 

 

Pi

265.148824

Theta

220.646989

Tajima's D

0.889738

CLR

0.000002

CSRT

0.633218339083046

Interpretation

Uncertain