Silkworm Genome Informatics Database

Gene

KWMTBOMO07680

Pre Gene Modal

BGIBMGA001281

Annotation

PREDICTED:_gem-associated_protein_5-like_[Bombyx_mori]

Location

Bomo_Chr13(-):4360685-4363150 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.943 Extracellular Reliability : 1.363

CDS

ATGGATGAATCAGTATTGTTTCCTTCACCGAATTGGTTTCAAGTATCTGGCCTAGCAATTTCGAAAGATGGTTGGCTCGTCTATAGCGGGCCGGGAAAAAGTCTTTGTATTGTAGAACCCCTCAAAAACTATAACAGTGTCATTGATTCAAAGCAGCCGTACTGTGTACATTTTTGGAATAGAGCTCATAATGACAAAATTGTAAGTGTTGACCTATCACCAGAATGGCCAGAGAAGAGATGTATCCTAACAGGTGCTGCTGATGGAACAGTTAAGCAGTGGGTGATCACTAATATAGCCCAAGAATTCAAGATAAATTCAACACACAGCCATGAAGTGCATCATAATGAAAAAGAAGTAATTTAA

Protein

MDESVLFPSPNWFQVSGLAISKDGWLVYSGPGKSLCIVEPLKNYNSVIDSKQPYCVHFWNRAHNDKIVSVDLSPEWPEKRCILTGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEVI

Uniprot

A0A3S2LFK8 A0A212EKL3 A0A2W1BT15 A0A194PD27 A0A2A4JTS7 A0A2H1WS83 + More
A0A0H2RBZ1 A0A1B6DZE3 A0A1B6CHN6 K7J2X6 A0A232FEJ5 A0A099P6L2

Pubmed

22118469 28756777 26354079 20075255 28648823 25159171 + More
28385833

EMBL

RSAL01000155 RVE45644.1 AGBW02014249 OWR42023.1 KZ149946 PZC76775.1 + More
KQ459606 KPI91137.1 NWSH01000677 PCG74873.1 ODYU01010667 SOQ55930.1 KQ086070 KLO08972.1 GEDC01006246 JAS31052.1 GEDC01024349 JAS12949.1 NNAY01000356 OXU28940.1 CP028773 JQFK01000005 MQVM01000028 NHMM01000002 AWU73562.1 KGK39879.1 ONH71798.1 OUT23056.1

Proteomes

UP000283053 UP000007151 UP000053268 UP000218220 UP000053477 UP000002358 + More
UP000215335 UP000029867 UP000189274 UP000195871 UP000249293

Pfam

PF00400 WD40 + More
PF04003 Utp12

Interpro

IPR017986   WD40_repeat_dom        + More
IPR001680   WD40_repeat
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR019775   WD40_repeat_CS
IPR036322   WD40_repeat_dom_sf
IPR011047   Quinoprotein_ADH-like_supfam
IPR027417   P-loop_NTPase
IPR020472   G-protein_beta_WD-40_rep
IPR007148   SSU_processome_Utp12

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998
SSF52540   SSF52540

Gene 3D

2.130.10.10

ProteinModelPortal

A0A3S2LFK8 A0A212EKL3 A0A2W1BT15 A0A194PD27 A0A2A4JTS7 A0A2H1WS83 + More
A0A0H2RBZ1 A0A1B6DZE3 A0A1B6CHN6 K7J2X6 A0A232FEJ5 A0A099P6L2

PDB

1JZT E-value=0.0941314, Score=76

KEGG

101743080 K13133 gem associated protein 5 | (RefSeq) gem-associated protein 5-like

PATHWAY

03013 RNA transport - Bombyx mori (domestic silkworm)

GO

GO:0005515 GO:0005524 GO:0007018 GO:0008017 GO:0004402 GO:0016573 GO:0008270 GO:0022891 GO:0003707 GO:0051537

Length:

121

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01373

Exp number, first 60 AAs:

0.01373

Total prob of N-in:

0.02430

outside

1 - 121

Pi

294.520357

Theta

185.901876

Tajima's D

1.725755

CLR

0.846255

CSRT

0.833458327083646

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics