Gene

KWMTBOMO07679

Pre Gene Modal

BGIBMGA001281

Annotation

PREDICTED:_gem-associated_protein_5-like_[Bombyx_mori]

Location

Bomo_Chr13(-):4350002-4359570      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.731 Nuclear   Reliability : 1.738

CDS

ATGTCCTGTTCATCACATCTGCTGCTACATGTTGCTGTTGGTACTAAGCAAGGGGTTATATTTGTCTTGGATCTGAATGGTCAGGGAAAAACTATTTACAAAGTTCGAGGTCAAGATGATGAGATAATGACTGTAAGTTGGTGCCCACAGTATGAAGTTGTTATAAAAAAATTGTTGAAGGAATCGGATAAAAGACCCAGTGTATCTGAAAGACTACATAAGATAAGAAACGAACCAGAACCTGATGAAATTGAAGATTCAAATCCGAAGAGTAGTGAAAATTTAGAAGCGTCTGGCATGGTTAAGAGCCTTCCTGAAGATAGTTTTGATGAATCTGTCACTGTAGAAGATGATATGTTTGACATTTATAAAGATCACGAAGCTGATGAATTCGGACACAAAAAATATCAACCAGAAGAAATACGTGTAAAAATAAAACCAGATTTGAAACAAGAAGATTATTTAGCTGAATGTTTGAAATTGAAGGAACAAATTTTACGAAATAAAAATGAAACAGAAGAATCTATAGAGTCATTAGTTGAGGCCCTAGACAAAACTCACGTCAGTAATGATGAATCACATAATGATGTATTAGATGATAAAAACAAAGATGATCTAGTACAAGGCAGTGATCATGTGCATAAGCATCTTTTAGCTACAATTGGAAAATTGGGTGGAGTAAGAATATGGTCGAAAACCGGCAAGTTGATAGCAAGTTGTGCAGTGCCACAGAACAAGAACATGAAAATAAAATCACCCAGCTGGCCTTCATTATTATGGTATAAATCGAATATGCTACTCATCGGAGACAACAGAAGTCAGTTGCTGGAATGCAATCCATTGGTAATTGATTGCAAGAATAAATTAGACTGGAAAATAGTCCACAGTCTACATAAGCGCGGATTGTATTCCTTGACAACGAATGCTCCAAGAGTTCAGACAGAAGCTGACAAACACAAAATCTGGTCAGTGTGGTCTACGTCACAGGACAGAAATATCATAGAATATTGTGTCGAGAAACGGGAGAAAGTAGCCGTACATGCCACCTGTGGACGTTTTGTGTATTGCATACGGAGCTGCCCCTATGACGCGGGCAAAATAGCAATAAGCGTTGGAGATGGTACAGTTCGCATCTGGGAAACCAATACACTGGATCATGATGATACTAAACTTGCTGCTGGCACCATTACTGCCTACTGGCAGAATGTTCAAGGAAGAGTTTTGACATTAGCCTGGCATCCGACAAAAGAAAATTGGCTAGCCTTCAGCACTGCCGAGTCCAGAGTGGGGATCCTGGACACGAGCGGTCGCGGCGCCCGCGCGCTGGTGCCGGGGCTGGCGGGCGGCGTGTACTCGCTGTGCTGGGGGCTGCGCTCGCACCTGTACGCCTGCGCCTCCGGACAACTCGTCGTGTACGACGCCGCCAGACCGGACCAACCCCCAGTACCAGTAGGAGTGGAGTTCGAAGGGCAAAAGTGGGAAATTAGTTCTATTAGCTGGAGTAGTCGCGGCTTTCTGGTGGGCAGTAACTCTGGTGGTGTTGCAGTACTCACGCACGAATTACCTCATACAGTCACGGCTGCTGTGTTTGCATTCAGTAAAATGATTCATTCAATAGATTGGCACCCTCAACAAACTTCTAATTCAAATGAAGAATCTCCTTTAAAAGATATGATTGCGGTTTGTTCATTGGACAATCAAAACACAATTATAATACTCGAGTATAGTGATAAAGGCGATCACGGACAGCTGACAACATGGAAAACGTTACGAGGCCACAAGGGAACCGTGTTCGAAGCGTCTTGGAACCCGCATCATGACGATCTGCTGCTGTCCACGTCTTCCGACGCCACAGTGCGGGTGTGGGCGGCGTCTAGTGGCGCCTGCGTGTCTGTGTTCGACGGGCACATGGCGCAGAGCGCGCTGGGCGCGGCGTGGAGCGCCTACCCGCAGCTCGCCACCAAGGCGCTGTCCGGGGGAGGAGACCACACGCTGAGGCTGTGGGACATGAACGACTTCCCCGCCGAAGCATACGACGGTCAGTTCATCACGAATCAATATTAG

Protein

MSCSSHLLLHVAVGTKQGVIFVLDLNGQGKTIYKVRGQDDEIMTVSWCPQYEVVIKKLLKESDKRPSVSERLHKIRNEPEPDEIEDSNPKSSENLEASGMVKSLPEDSFDESVTVEDDMFDIYKDHEADEFGHKKYQPEEIRVKIKPDLKQEDYLAECLKLKEQILRNKNETEESIESLVEALDKTHVSNDESHNDVLDDKNKDDLVQGSDHVHKHLLATIGKLGGVRIWSKTGKLIASCAVPQNKNMKIKSPSWPSLLWYKSNMLLIGDNRSQLLECNPLVIDCKNKLDWKIVHSLHKRGLYSLTTNAPRVQTEADKHKIWSVWSTSQDRNIIEYCVEKREKVAVHATCGRFVYCIRSCPYDAGKIAISVGDGTVRIWETNTLDHDDTKLAAGTITAYWQNVQGRVLTLAWHPTKENWLAFSTAESRVGILDTSGRGARALVPGLAGGVYSLCWGLRSHLYACASGQLVVYDAARPDQPPVPVGVEFEGQKWEISSISWSSRGFLVGSNSGGVAVLTHELPHTVTAAVFAFSKMIHSIDWHPQQTSNSNEESPLKDMIAVCSLDNQNTIIILEYSDKGDHGQLTTWKTLRGHKGTVFEASWNPHHDDLLLSTSSDATVRVWAASSGACVSVFDGHMAQSALGAAWSAYPQLATKALSGGGDHTLRLWDMNDFPAEAYDGQFITNQY

Uniprot

A0A3S2LFK8   A0A212EKL3   A0A2W1BT15   A0A2A4JTS7   A0A2H1WS83   A0A194PD27   + More
A0A194QYK5   A0A154PRA4   A0A0P6EJQ9   A0A0P5M057   A0A0N8E160   A0A0P6IQX4   A0A0P6AW20   A0A0P5T8N9   A0A0P5Y6Y2   A0A0P5YU19   K7J2X6   A0A232FEJ5   A0A2A3ECB7   E2B371   A0A088A7B4   A0A0C9R3K7   A0A310SU74   A0A0M8ZSJ0   A0A195E488   A0A026WZX8   A0A151X220   A0A195FIX4   F4W6G0   A0A158P272   A0A195AVJ2   K1QI76   T1JBR0   D1ZZV0   A0A2T7PMS1   A0A091HME1   J9LLJ4   A0A1W2WMP3   A0A091RW82   A0A1S3HRG7   V9K8J8   F6ZHD7   F6WUT8   A0A1S3K5E0   A0A091K569   A0A091QBN7   U3K106   A0A093GJL0   A0A099ZQ50   A0A091IV06   A0A0Q3U3C8   A0A1Y1ML03   W5PKH7   A0A3L8SK07   A0A091V691   A0A091LVX5   A0A094LA71  

Pubmed

22118469    28756777    26354079    20075255    28648823    20798317    + More
24508170    21719571    21347285    22992520    18362917    19820115    24402279    12481130    15114417    28004739    20809919    30282656   

EMBL

RSAL01000155    RVE45644.1    AGBW02014249    OWR42023.1    KZ149946    PZC76775.1    + More
NWSH01000677    PCG74873.1    ODYU01010667    SOQ55930.1    KQ459606    KPI91137.1    KQ460947    KPJ10542.1    KQ435012    KZC13808.1    GDIQ01068643    JAN26094.1    GDIQ01171650    JAK80075.1    GDIQ01071988    JAN22749.1    GDIQ01001527    JAN93210.1    GDIP01025750    JAM77965.1    GDIP01146322    GDIP01135873    GDIP01135872    GDIP01096839    GDIP01096838    GDIP01074038    LRGB01002993    JAL67841.1    KZS05197.1    GDIP01075328    JAM28387.1    GDIP01066733    JAM36982.1    NNAY01000356    OXU28940.1    KZ288296    PBC28932.1    GL445305    EFN89853.1    GBYB01002530    JAG72297.1    KQ759878    OAD62256.1    KQ435918    KOX68733.1    KQ979657    KYN19901.1    KK107054    EZA61582.1    KQ982580    KYQ54459.1    KQ981523    KYN40353.1    GL887707    EGI70295.1    ADTU01007002    ADTU01007003    KQ976731    KYM76201.1    JH816294    EKC33488.1    JH432018    KQ971338    EFA02425.1    PZQS01000003    PVD34720.1    KL217541    KFO96364.1    ABLF02040311    KK935207    KFQ46840.1    JW861896    AFO94413.1    EAAA01001438    KK546863    KFP32612.1    KK659118    KFQ06989.1    AGTO01010809    KL216598    KFV70450.1    KL895988    KGL83083.1    KK501093    KFP12534.1    LMAW01000148    KQL60424.1    GEZM01031052    JAV85085.1    AMGL01093654    QUSF01000017    RLW03061.1    KL410715    KFQ98588.1    KK509422    KFP62542.1    KL263879    KFZ60964.1   

Proteomes

UP000283053    UP000007151    UP000218220    UP000053268    UP000053240    UP000076502    + More
UP000076858    UP000002358    UP000215335    UP000242457    UP000008237    UP000005203    UP000053105    UP000078492    UP000053097    UP000075809    UP000078541    UP000007755    UP000005205    UP000078540    UP000005408    UP000007266    UP000245119    UP000054308    UP000007819    UP000085678    UP000008144    UP000016665    UP000053875    UP000053641    UP000053119    UP000051836    UP000002356    UP000276834    UP000053283   

Pfam

PF00400   WD40        + More
PF00041   fn3
PF12371   TMEM131_like
PF12894   ANAPC4_WD40

Interpro

IPR017986   WD40_repeat_dom        + More
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR020472   G-protein_beta_WD-40_rep       
IPR013783   Ig-like_fold       
IPR022113   TMEM131-like_dom       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR039877   TMEM131-like       
IPR011041   Quinoprot_gluc/sorb_DH       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF49265   SSF49265       
SSF50952   SSF50952       

Gene 3D

2.130.10.10     2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

A0A3S2LFK8   A0A212EKL3   A0A2W1BT15   A0A2A4JTS7   A0A2H1WS83   A0A194PD27   + More
A0A194QYK5   A0A154PRA4   A0A0P6EJQ9   A0A0P5M057   A0A0N8E160   A0A0P6IQX4   A0A0P6AW20   A0A0P5T8N9   A0A0P5Y6Y2   A0A0P5YU19   K7J2X6   A0A232FEJ5   A0A2A3ECB7   E2B371   A0A088A7B4   A0A0C9R3K7   A0A310SU74   A0A0M8ZSJ0   A0A195E488   A0A026WZX8   A0A151X220   A0A195FIX4   F4W6G0   A0A158P272   A0A195AVJ2   K1QI76   T1JBR0   D1ZZV0   A0A2T7PMS1   A0A091HME1   J9LLJ4   A0A1W2WMP3   A0A091RW82   A0A1S3HRG7   V9K8J8   F6ZHD7   F6WUT8   A0A1S3K5E0   A0A091K569   A0A091QBN7   U3K106   A0A093GJL0   A0A099ZQ50   A0A091IV06   A0A0Q3U3C8   A0A1Y1ML03   W5PKH7   A0A3L8SK07   A0A091V691   A0A091LVX5   A0A094LA71  

PDB

5THA     E-value=1.75655e-25,     Score=290

KEGG

101743080    K13133 gem associated protein 5 | (RefSeq) gem-associated protein 5-like

GO

GO:0003824   GO:0043022   GO:0030622   GO:0016604   GO:0034718   GO:0034719   GO:0032797   GO:0030619   GO:0030621   GO:0000340   GO:0022625   GO:0006417   GO:0003730   GO:0000387   GO:0005515   GO:0005524   GO:0007018   GO:0008017   GO:0004402   GO:0016573   GO:0008270   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR22050  

Length:

687

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.20099

Exp number, first 60 AAs:

0.18226

Total prob of N-in:

0.00914

outside

1  -  687

 

 

Pi

201.296584

Theta

171.562104

Tajima's D

0.364613

CLR

0.204721

CSRT

0.475476226188691

Interpretation

Uncertain