Silkworm Genome Informatics Database

Gene

KWMTBOMO07672

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]

Location

Bomo_Chr13(-):4180037-4184170 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.661

CDS

ATGCCGATTGGGAAAGTTGAAAGTTTTGATATGGGATCTCAAAATTGGGACACATACATTCGTCGTGTAAAACAATTCATGGAACTCAACGACATTGAACAGAGACTTCACGTTGCAACGCTCGTGACCTTAGTTGGGTCTGAGTGCTATGACTTAATGTGTGACTTGTGTGCTCCGGACTTACCAGAAGAAAAGGATTTCGACATACTCGTAAAATTAGTCAAAGATCATCTAGAACCTGAAAGATCGGAAATAGCAGAACGTCATATCTTCAGGCAAAGAAAGCAGCAAAATAACGAAAGCATTCGTTCCTACCTACAAAGTTTGAAACATTTGGCTAAAACTTGCAATTTCGGCATCACATTAGAAATTAATCTACGCGATCAATTCGTATCAGGATTATATAGCGAGGAGATGCGATCAAGGCTGTTTGCCGAAAAAGATATAGATTACAAGCGCGCTGTTGAGTTGGCATCAGCACTGGAAGCAGCGGATCGACATGCGATGGCGGCTGGGGGCACTGGGGGCAGCTCACAGGCTGCGTCCGAGAGCGAAGGCATGCATCGGGTCGGCGGAGCGCGCGCGGAGGCTCGCTGCGCCTGCAGACGCTGCGGCAAGCTGGGCCATGCGGAGGGTCGGTGTCGGTACAAGCACTACACCTGTGACTCATGTGGCGAGAAGGGACACCTAAAATCAATGTGTCGGAACCGTAAAGGTAACCAAAAGATTGAAAAAAACCGAGAAGTGTTTGCTGGAGGTTTAGGAACATGTAAATCACGCATAAAATTACATCTAAAAGAAAAGACGCCAATATTTGTAAAGGCGCGGGCGCTGCCACTGGCGTTGCGCGAGCGCGTTGAGCGAGAACTTGATCGTTTACAAAGTGAGGGAGTTATTTACAAAGTAGATAGGTCTGATTACGGCACGCCTATCGTACCAGTCGTTAAGGCAAATGGCGATATTCGTATTTGCGGCGACTATAAAATCACAATAAACCCACGTCTGAAGGATTATCACTATCCTTTGCCGCACATTAAAGATTTGTTTGCCACTTTAGGTGGTGGTGAATATTACACAAAATTGGATTTATCTAATGCATTCCAGCAATGCCTCTTAGACGAAGAATCCCAGCCGATGACAGCGATCACGACACACATTGGTACTTTTGTCTATAAGCGCGTTCCGTTTGGAATTAAATGCATTCCGGAAAACTTTCAGAAGATTATGGAAGAGATTCTAAGTGGTCTGCCTTCAACCGTTATTTTTGCGGACGATATATGTGTAACCGGAAAAAACAGATTTGAACATTTATCAAATCTACGAGCAGTCTCTCCGGTACTGGCACATTATAACCCAAATTCGCCATTAGTGCTTTCCGTTGACAGCAGCCAGTACGGACTGGGCGCCGTCCTCACTCAGAAGCACATCGACGGCACTGAGCGGCTCGTCAGCTGTGCCTCACGGACTCTCGCGCCAGCCGAACTTAACTATTCTCAGCTGGACAAAGAAGCTTTGGCTATAATGTTTGGGGTTACTAAACACCATCAGTATTTGTACGGGAGACGTTTTGTTTTACGAAGTGATCATAAGGCTTTGAGTTATATTCTTGGAAAGAATAAAGGTATACCTCTAACCGCCGCGAGTCGTCTGCAACGATTTGCTGTAAAGCTAGCTGCGTATGATTTTGAGATCGAATTTATTAGTTCTACAGATAATTGCCAGGCTGACGCGCTATCACGACTTCCACTGGATACTAATTTTAAGAATAATATTAAGGAGTATAATTACCTAAACTTCGTTCAAGAAAGCTTTCCACTCAGTTTTAAAGAAATTAAAAAGGAAGTTACGAAGGATCCTTTACTAAACAAAATTTACGGTTACGTCATGTTCGGCTGGCCCTCTGCCAGTAAAGAACAAGCAGAAAAACCCTATTTTAACAGAAGAGAATCCATACATATTGATCACGGTTGTCTTGTATGGGGTTACAGAATAATAATTCCAACTTCATTGCGAGAGACTGTGTTACAGGAGTTACATGAGGGACATCCGGGTATTGTTAAGATGAAACAATTAAGCCGGAACTACGTATGGTGGGAGACAGTCGATGCGGACATTGAACGTGTATGTGCTCAGTGCCAGGCCTGTCGGTCTCAGCGCGCTGCACCACCATCGGTGCCGCTGCACTCGTGGCCATGGCCGGAAGAGCCGTGGGCGCGCCTTAATCTTGATTTCTTGGGACCGTTTAATAACAAATATTACTTAATTATAGTGGACGCTCATTCAAAATGGATCGAGGTGGAAAAATTGAGCTGTACATCAGCCACGGCAGTAATCGCATGTCTCAGACGATTGTTTGCTCGATTTGGCTTAGCAAAAAAGGTAGTTACTGATAACGGACCACCTTTCTCGTCGGTCGAATTTAGATCATATTTAAGTAAAAACGGTATAAAACATTTACCGGTGGCTCCGTATCATCCATCTAGCAATGGGGCAGCGGAAAACGCCGTAAAAACCATAAAAAGAGTGTTGAAAAAGGCTTTAATTGAAAAGGAAGACGACAATACCGCCTTGACAAAATTTCTCTTTATGAACAGAAATTCTGAGCGTAGCACTACAGGGCGCGAACCAGCAGTTGCTTTGTTCGGACGTCGCCTGCGTGGAAGACTGGATCTGTTGCGTCCCAATACTAGCTCCATAGTACGAGAAGCACAGCTGGCAAGCGAAAGCTATAATGCAGGCACAGCCGGATATAGGGAGGCTGCAGAAGGAGACTCGGTCCTATTGCAAGATTTCACACAGGGAAAAAAGAAATGGACCCCAGGAACAATAAAAAACCGCTTAGGTCCGGTGACATACAGGGTAACAGCAGATGACGGGCGGGTACACAAACGTCACATCGACCAGATTTTAATAAGTAATAATAGTCGAAAATCACGTTATTCTTTGTCCAAATTAAACAATGATTTCGAGACAAAATCAGTAAATGATAGTGTGGGTGAAGCTCGGGAAAGTCCGGGTATGACCGGAGAAAAGGAGCTCAACTCCAGCTATGACACGGGACCGGAAAGTCCACAACCTGTGACTCCTAGTCACTCGCCAGCGCCGAATGTCTTGCAACCATGGCGTCAGCGCCGTAAAGCTGCTTTAACGTGTATTCAGAGAATTAAGGACCAAAATTACTAA

Protein

MPIGKVESFDMGSQNWDTYIRRVKQFMELNDIEQRLHVATLVTLVGSECYDLMCDLCAPDLPEEKDFDILVKLVKDHLEPERSEIAERHIFRQRKQQNNESIRSYLQSLKHLAKTCNFGITLEINLRDQFVSGLYSEEMRSRLFAEKDIDYKRAVELASALEAADRHAMAAGGTGGSSQAASESEGMHRVGGARAEARCACRRCGKLGHAEGRCRYKHYTCDSCGEKGHLKSMCRNRKGNQKIEKNREVFAGGLGTCKSRIKLHLKEKTPIFVKARALPLALRERVERELDRLQSEGVIYKVDRSDYGTPIVPVVKANGDIRICGDYKITINPRLKDYHYPLPHIKDLFATLGGGEYYTKLDLSNAFQQCLLDEESQPMTAITTHIGTFVYKRVPFGIKCIPENFQKIMEEILSGLPSTVIFADDICVTGKNRFEHLSNLRAVSPVLAHYNPNSPLVLSVDSSQYGLGAVLTQKHIDGTERLVSCASRTLAPAELNYSQLDKEALAIMFGVTKHHQYLYGRRFVLRSDHKALSYILGKNKGIPLTAASRLQRFAVKLAAYDFEIEFISSTDNCQADALSRLPLDTNFKNNIKEYNYLNFVQESFPLSFKEIKKEVTKDPLLNKIYGYVMFGWPSASKEQAEKPYFNRRESIHIDHGCLVWGYRIIIPTSLRETVLQELHEGHPGIVKMKQLSRNYVWWETVDADIERVCAQCQACRSQRAAPPSVPLHSWPWPEEPWARLNLDFLGPFNNKYYLIIVDAHSKWIEVEKLSCTSATAVIACLRRLFARFGLAKKVVTDNGPPFSSVEFRSYLSKNGIKHLPVAPYHPSSNGAAENAVKTIKRVLKKALIEKEDDNTALTKFLFMNRNSERSTTGREPAVALFGRRLRGRLDLLRPNTSSIVREAQLASESYNAGTAGYREAAEGDSVLLQDFTQGKKKWTPGTIKNRLGPVTYRVTADDGRVHKRHIDQILISNNSRKSRYSLSKLNNDFETKSVNDSVGEARESPGMTGEKELNSSYDTGPESPQPVTPSHSPAPNVLQPWRQRRKAALTCIQRIKDQNY

Uniprot

A0A2B4R6J0 A0A2B4RI10 J9LQK2 A0A2B4S0C2 E3NEM4

EMBL

LSMT01001659 PFX12008.1 LSMT01000599 PFX15892.1 ABLF02008637 LSMT01000238 + More
PFX22483.1 DS268623 EFO94687.1

Proteomes

UP000225706 UP000007819 UP000008281

Pfam

PF17921   Integrase_H2C2        + More
PF00665   rve
PF17917   RT_RNaseH
PF00078   RVT_1
PF17919   RT_RNaseH_2

Interpro

IPR041373   RT_RNaseH        + More
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR000477   RT_dom
IPR001878   Znf_CCHC
IPR001995   Peptidase_A2_cat
IPR021109   Peptidase_aspartic_dom_sf
IPR041577   RT_RNaseH_2
IPR036875   Znf_CCHC_sf

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630
SSF57756   SSF57756

Gene 3D

3.30.420.10 2.40.70.10

ProteinModelPortal

A0A2B4R6J0 A0A2B4RI10 J9LQK2 A0A2B4S0C2 E3NEM4

PDB

4OL8 E-value=1.29578e-13, Score=190

KEGG

NA

GO

GO:0015074 GO:0003676 GO:0008270 GO:0004190 GO:0016567 GO:0004402 GO:0016573 GO:0022891 GO:0003707 GO:0051537

Length:

1060

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00059

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00001

outside

1 - 1060

Pi

241.674321

Theta

173.398229

Tajima's D

2.122863

CLR

0.0336

CSRT

0.903954802259887

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree