Gene

KWMTBOMO07659

Pre Gene Modal

BGIBMGA001290

Annotation

PREDICTED:_TRAF6_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(-):3306604-3312865      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.436

CDS

ATGGACCGAAACAGAGCTAAAGATGCTTCAGAAGGGATCGCTCCTATGGGCATAACTGCATTAAATGAGACAGTTTTAAGTAACCAGCCAGAGTCACGATACGAATGTCCTGTTTGTTTAAACTGGCTTAGAGATCCAGTAATCACAACATGCGGACACAAGTTTTGTAAAAGCTGCATTACGTCATGGCTACAAAACAGTGGTCACTGTCCAATCGATAATATTAATCTAAGTATGAAAGTGGATATATTTCCTGATAACTACACTAAAAGAGAAATACAAGAACAAAGAATGAACTGTCCATTTTCAGCTAAAGGATGTACAGTAAAAGTAACCCCCTTAGACTTAGATGCACACATAGCTGTGTGCGAGTACAATCAACCGGAAACATCTTCACAACCAGAAATACACATCCCTTGCTCATTCAAGCCAGCCGGTTGTAAAGAAACATTTGATAGTCAAGATGAAATGAACCAACATTTGAATAATGATACCCAGAGTCATATGAATTTACTCATGAATGCATATTCAGAAATGAAAATCAATAATGATATGTCGAATGCTAATATGGACACTAAAGAACAAGAGGCGATGGCTCTGTGGGACGCACCTGATAAAGATGGCAATCAAACATCATCCCCACCACTTAACAATACCAGTGCACTAATACGAGCTCTATATGAACGTGTTGTCGTACTTGAACAAAGGAATCGCGAACAAGACATAGTCATAGCAAATATTTCGAAGCAACTCTCGGCTTTTGCCGTAGCCAAGATGAAACAAAACAATGAAATGTTACTGCGCTACTGCATGGGAAACTATGTGTGGAGAATCGATAACTTCAAAACGAGACTTGACGCCATGCTGAAGGACCATTACAAAATGTTGTACAGCCCTGGATTCTATACATCACCCAACGGTTATAGATTTTGTGTCCGGCTGAACATTTCACCGCAGAACACCCACTTCTTCGCTCTGCACGTGCACTTAATGAAGACCGAAAACGACGACTGCCTCGAATGGCCGTTCAACGGCAGGATATCGTTCGTCCTGGTCAACCAGGTCTACCCGGAGCTGTCCCAGCGCGACACGATGATGTCCAACACGAACTTGAAGGCGTTCAGTAAGCCCGCCACGGAGATATGCGTGCGAGGATTCGGCTACACGGAGTACGCTGTCCTCGGTGACGTCATTCGCAACGGCTTTGTCAAGGACGACGTTCTCATCATCAGAGTCAACATCAAATGCGTATGA

Protein

MDRNRAKDASEGIAPMGITALNETVLSNQPESRYECPVCLNWLRDPVITTCGHKFCKSCITSWLQNSGHCPIDNINLSMKVDIFPDNYTKREIQEQRMNCPFSAKGCTVKVTPLDLDAHIAVCEYNQPETSSQPEIHIPCSFKPAGCKETFDSQDEMNQHLNNDTQSHMNLLMNAYSEMKINNDMSNANMDTKEQEAMALWDAPDKDGNQTSSPPLNNTSALIRALYERVVVLEQRNREQDIVIANISKQLSAFAVAKMKQNNEMLLRYCMGNYVWRIDNFKTRLDAMLKDHYKMLYSPGFYTSPNGYRFCVRLNISPQNTHFFALHVHLMKTENDDCLEWPFNGRISFVLVNQVYPELSQRDTMMSNTNLKAFSKPATEICVRGFGYTEYAVLGDVIRNGFVKDDVLIIRVNIKCV

Uniprot

A0A2H1V3Z4   A0A2A4K7T0   A0A1E1W4E6   E9JEJ3   A0A212ES92   A0A3S2NS52   + More
A0A194PDM7   A0A194QZX3   D2A1X0   A0A1W4W6B8   A0A1Y1NJY0   N6T883   A0A088AT24   A0A310S4W2   A0A2A3EID5   A0A1B6C0K9   A0A1B6CRS1   A0A0A1X2C8   A0A1B6J2U8   V5GZ69   A0A1B6FGM2   A0A1B6GMD4   A0A034W321   A0A0K8V072   W8C0H6   A0A154PPY8   A0A1L8DLN5   A0A1L8DMJ9   A0A0L0C3G6   A0A067RFW6   A0A0M4EM22   B4Q0E8   A0A2J7R2R9   A0A1I8M8V2   A0A182QDD0   A0A182WRK7   A0A182U9W8   A0A182RNS2   B3NX05   A0A182PKL6   Q9UAC4   A0A182ULZ7   A0A2M4AHW9   W5J6T9   A0A2M3Z6H8   A0A182FRD8   Q9W3I9   A0A2M4BRV7   B4JNP8   T1DRM4   A0A084VJT9   A0A1W4VXD1   A0A023EYV6   A0A0C9PK53   A0A182SJ79   A0A182JV48   B4L8G7   E2C776   A0A182J703   A0A182Y499   A0A182W055   A0A182LFV0   B4M202   A0A182MKP3   A0A1A9X565   A0A182N649   A0A0V0GBN6   A0A1B0G833   A0A3B0K888   Q29HD1   A0A1I8P8I3   Q9XYQ9   Q7PR29   A0A1A9VWT0   A0A182HU69   A0A1B0A171   A0A1A9XA24   A0A1B0AN13   A0A0L7REJ8   A0A195FJU3   A0A195E467   A0A158NXB6   B3MRL9   B4MSF1   A0A026WE70   A0A195BU78   F4WUP3   A0A195D350   T1HRR6   B4GXW7   A0A1B0DQ91   A0A151WXT0   A0A1B0GI36   A0A0A9WW92   A0A182TJJ4   B4IKY0   E0VE99   A0A2R7VZ10   A0A1B6MM67  

Pubmed

19121390    21040523    22118469    26354079    18362917    19820115    + More
28004739    23537049    25830018    25348373    24495485    26108605    24845553    17994087    17550304    25315136    20920257    23761445    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24438588    25474469    20798317    25244985    20966253    15632085    10021364    12364791    21347285    24508170    30249741    21719571    25401762    26823975    20566863   

EMBL

ODYU01000571    SOQ35563.1    NWSH01000056    PCG80129.1    GDQN01009196    JAT81858.1    + More
BABH01001343    BABH01001344    BABH01001345    GQ426310    ADM32536.1    AGBW02012839    OWR44362.1    RSAL01000275    RVE43117.1    KQ459606    KPI91118.1    KQ460947    KPJ10525.1    KQ971338    EFA02851.1    GEZM01001416    GEZM01001415    GEZM01001414    GEZM01001413    GEZM01001410    GEZM01001409    GEZM01001407    GEZM01001405    GEZM01001404    GEZM01001403    GEZM01001401    GEZM01001399    JAV97818.1    APGK01047844    KB741091    KB632368    ENN73928.1    ERL93680.1    KQ773364    OAD52384.1    KZ288254    PBC30761.1    GEDC01030247    GEDC01020642    GEDC01018876    GEDC01009232    JAS07051.1    JAS16656.1    JAS18422.1    JAS28066.1    GEDC01021180    JAS16118.1    GBXI01009030    JAD05262.1    GECU01014197    JAS93509.1    GALX01001264    JAB67202.1    GECZ01020485    JAS49284.1    GECZ01006171    JAS63598.1    GAKP01010432    JAC48520.1    GDHF01020078    JAI32236.1    GAMC01007419    JAB99136.1    KQ435028    KZC13963.1    GFDF01006706    JAV07378.1    GFDF01006398    JAV07686.1    JRES01000955    KNC26801.1    KK852491    KDR22761.1    CP012528    ALC48671.1    CM000162    EDX02285.1    NEVH01007828    PNF35131.1    AXCN02000196    CH954180    EDV46834.1    AF079838    AAD47895.1    GGFK01007001    MBW40322.1    ADMH02002131    ETN58489.1    GGFM01003381    MBW24132.1    AE014298    AY047501    AAF46338.1    AAK77233.1    GGFJ01006377    MBW55518.1    CH916371    EDV92341.1    GAMD01000585    JAB01006.1    ATLV01013870    KE524906    KFB38233.1    GBBI01004345    JAC14367.1    GBYB01001393    GBYB01001395    JAG71160.1    JAG71162.1    CH933815    EDW07942.2    GL453340    EFN76189.1    CH940651    EDW65706.2    AXCM01000845    GECL01001367    JAP04757.1    CCAG010000157    OUUW01000016    SPP88882.1    CH379064    EAL31827.1    AF119793    AAD34345.1    AAAB01008859    EAA07925.6    APCN01000610    JXJN01000694    KQ414609    KOC69259.1    KQ981523    KYN40274.1    KQ979657    KYN19980.1    ADTU01029620    CH902622    EDV34424.1    CH963851    EDW75040.2    KK107250    QOIP01000002    EZA54362.1    RLU25883.1    KQ976408    KYM91174.1    GL888375    EGI62040.1    KQ976885    KYN07335.1    ACPB03022414    CH479196    EDW27594.1    AJVK01018951    KQ982661    KYQ52663.1    AJWK01011243    AJWK01011244    AJWK01011245    GBHO01043398    GBHO01034516    GBHO01034515    GBHO01034514    GBHO01034513    GBHO01028922    GBHO01025204    GBHO01025181    GBHO01025177    GBHO01019954    GBHO01001773    GDHC01016793    GDHC01001727    GDHC01001649    GDHC01001200    JAG00206.1    JAG09088.1    JAG09089.1    JAG09090.1    JAG09091.1    JAG14682.1    JAG18400.1    JAG18423.1    JAG18427.1    JAG23650.1    JAG41831.1    JAQ01836.1    JAQ16902.1    JAQ16980.1    JAQ17429.1    CH480859    EDW52751.1    DS235088    EEB11705.1    KK854182    PTY12717.1    GEBQ01002943    JAT37034.1   

Proteomes

UP000218220    UP000005204    UP000007151    UP000283053    UP000053268    UP000053240    + More
UP000007266    UP000192223    UP000019118    UP000030742    UP000005203    UP000242457    UP000076502    UP000037069    UP000027135    UP000092553    UP000002282    UP000235965    UP000095301    UP000075886    UP000076407    UP000075902    UP000075900    UP000008711    UP000075885    UP000075903    UP000000673    UP000069272    UP000000803    UP000001070    UP000030765    UP000192221    UP000075901    UP000075881    UP000009192    UP000008237    UP000075880    UP000076408    UP000075920    UP000075882    UP000008792    UP000075883    UP000091820    UP000075884    UP000092444    UP000268350    UP000001819    UP000095300    UP000007062    UP000078200    UP000075840    UP000092445    UP000092443    UP000092460    UP000053825    UP000078541    UP000078492    UP000005205    UP000007801    UP000007798    UP000053097    UP000279307    UP000078540    UP000007755    UP000078542    UP000015103    UP000008744    UP000092462    UP000075809    UP000092461    UP000001292    UP000009046   

PRIDE

E9JEJ3    Q9UAC4    Q9W3I9    Q9XYQ9   

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR017907   Znf_RING_CS       
IPR008974   TRAF-like       
IPR001841   Znf_RING       
IPR002083   MATH/TRAF_dom       
IPR012227   TNF_rcpt--assoc_TRAF       
IPR037309   TRAF6_MATH       
IPR003613   Ubox_domain       
IPR013010   Znf_SIAH       

SUPFAM

SSF49599   SSF49599       

Gene 3D

2.60.210.10     3.30.40.10    

CDD

cd03776  MATH_TRAF6

ProteinModelPortal

A0A2H1V3Z4   A0A2A4K7T0   A0A1E1W4E6   E9JEJ3   A0A212ES92   A0A3S2NS52   + More
A0A194PDM7   A0A194QZX3   D2A1X0   A0A1W4W6B8   A0A1Y1NJY0   N6T883   A0A088AT24   A0A310S4W2   A0A2A3EID5   A0A1B6C0K9   A0A1B6CRS1   A0A0A1X2C8   A0A1B6J2U8   V5GZ69   A0A1B6FGM2   A0A1B6GMD4   A0A034W321   A0A0K8V072   W8C0H6   A0A154PPY8   A0A1L8DLN5   A0A1L8DMJ9   A0A0L0C3G6   A0A067RFW6   A0A0M4EM22   B4Q0E8   A0A2J7R2R9   A0A1I8M8V2   A0A182QDD0   A0A182WRK7   A0A182U9W8   A0A182RNS2   B3NX05   A0A182PKL6   Q9UAC4   A0A182ULZ7   A0A2M4AHW9   W5J6T9   A0A2M3Z6H8   A0A182FRD8   Q9W3I9   A0A2M4BRV7   B4JNP8   T1DRM4   A0A084VJT9   A0A1W4VXD1   A0A023EYV6   A0A0C9PK53   A0A182SJ79   A0A182JV48   B4L8G7   E2C776   A0A182J703   A0A182Y499   A0A182W055   A0A182LFV0   B4M202   A0A182MKP3   A0A1A9X565   A0A182N649   A0A0V0GBN6   A0A1B0G833   A0A3B0K888   Q29HD1   A0A1I8P8I3   Q9XYQ9   Q7PR29   A0A1A9VWT0   A0A182HU69   A0A1B0A171   A0A1A9XA24   A0A1B0AN13   A0A0L7REJ8   A0A195FJU3   A0A195E467   A0A158NXB6   B3MRL9   B4MSF1   A0A026WE70   A0A195BU78   F4WUP3   A0A195D350   T1HRR6   B4GXW7   A0A1B0DQ91   A0A151WXT0   A0A1B0GI36   A0A0A9WW92   A0A182TJJ4   B4IKY0   E0VE99   A0A2R7VZ10   A0A1B6MM67  

PDB

6MYD     E-value=1.70792e-21,     Score=254

KEGG

100862757    K03175 TNF receptor-associated factor 6 [EC:2.3.2.27] | (RefSeq) TRAF6

PATHWAY

04013    MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)
04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)
04140    Autophagy - animal - Bombyx mori (domestic silkworm)
04144    Endocytosis - Bombyx mori (domestic silkworm)
04214    Apoptosis - fly - Bombyx mori (domestic silkworm)

GO

GO:0046872   GO:0042981   GO:0008270   GO:0007165   GO:0070534   GO:0032991   GO:0043123   GO:0004842   GO:0005164   GO:0051092   GO:0043122   GO:0008219   GO:0045087   GO:0050688   GO:0010508   GO:0031098   GO:0045746   GO:0005737   GO:0000209   GO:0007391   GO:0005515   GO:0016567   GO:0004402   GO:0016573   GO:0022891   GO:0003707   GO:0051537  

Length:

417

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01168

Exp number, first 60 AAs:

0.00122

Total prob of N-in:

0.05405

outside

1  -  417

 

 

Pi

150.969224

Theta

187.860415

Tajima's D

-1.319139

CLR

0

CSRT

0.0887955602219889

Interpretation

Uncertain