Gene

KWMTBOMO07651

Pre Gene Modal

BGIBMGA000851

Annotation

PREDICTED:_probable_arginine--tRNA_ligase?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr13(+):3217976-3219516      View in EpiBrowser

Full name

Palmitoyltransferase      

Location in the cell

Nuclear   Reliability : 3.15

CDS

ATGAACAAATTGGCAGAAACGGATGAAAATGTTCAAAATGAAGCCAGAAAATACTTTTCAGATATAGAACAAGGAAAAATAAGTCTGGAAAACTGGAAGAAAATCCGCAACGTAACAGTGCATGAATTAGAAAATGTATATCAAAGATTAGGTATAACTTTTGATGCTTTCCATTGGGAATCTGATTACAATGGCATTGCCATCAGAGATCTGATGGATTACTTACAGAAACATAACATTATAAGTAATGATGAAACAGGAAAGAAAATTGCTACCATCAATAACAAAAAAATCACGTTTCTTAAAAGCGACAATTCCACTTTGTATCTCACTAGAGATGTTGCTGCTTTATTGGATCGTCATAAAAAATATGATTTTGATAAGATGTTGTACATTGTTGATAATTCACAGGCTGATCATTTCTCATCTGTTTTTGAAATTGTAAAGCAGTTTAATAAGAAGTGTACTGAAGGCTGTGAACATATAAAATTTGGAAGAATAAAGGGTATGAGTACAAGAAAGGGTAATGCTGTATTTTTAAATGATATCTTAGATGAAGCGAAACAGAAAATGTATGAAAAACAAATGCAGTCAAAAAACACAAGGCAATCTGCAATGAATGAAGAAACATGTGACATACTTGGTACCACTGCTGTAGTAATTAATGATTTAAAACAAAGAAGACAGCGTGATTATGAATTTAACTGGGACAGAGCTCTACAAAGTGAAGGTGACAGTGGAATTAAATTACAATATCTACATTGCAGACTTAGAAGCTTAGAAAAAAATTGTGGTGTTTCCATCCCTGAGTTTTGCAGTCCAGCTCTTCTGACTGAAGATATAATAGTTGATGTAGTAAATGAGCTGTCAAAATTTGAAAATGTTTTACAGAGGTCATTTGAAGCATATGAAGCCTGTATTTTAGTCAGTTACTTGTTCCGCTTAGCTAAATGTATAAATAAAATGTTCAAAGAGATGAAAGTAAAAAATGTAGATCAAAGTACTGCCGAACAAAGGCTTTTAGTTTTTCATGCAGCTCGTATCGTTGTAAAAACTAGTTTAGAAATTTTAGGTGTGAGACCTCTTGATGAAATGTAA

Protein

MNKLAETDENVQNEARKYFSDIEQGKISLENWKKIRNVTVHELENVYQRLGITFDAFHWESDYNGIAIRDLMDYLQKHNIISNDETGKKIATINNKKITFLKSDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQADHFSSVFEIVKQFNKKCTEGCEHIKFGRIKGMSTRKGNAVFLNDILDEAKQKMYEKQMQSKNTRQSAMNEETCDILGTTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLRSLEKNCGVSIPEFCSPALLTEDIIVDVVNELSKFENVLQRSFEAYEACILVSYLFRLAKCINKMFKEMKVKNVDQSTAEQRLLVFHAARIVVKTSLEILGVRPLDEM

Catalytic Activity

hexadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-hexadecanoyl-L-cysteinyl-[protein]

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.
Belongs to the DHHC palmitoyltransferase family.

Uniprot

H9IUC1   A0A2A4K838   A0A2H1VTM0   A0A194PD07   S4NNK3   A0A194QZ07   + More
A0A0L7LU28   A0A067QW94   D6WDT1   A0A1B6KMN9   A0A0T6B271   A0A2J7Q5A9   A0A1B6BZL1   E2ATT0   A0A195E5J6   F4WPD4   A0A2J7Q5B2   A0A195EVF0   E9ISP6   B0WXM2   A0A1B6GG27   A0A0C9RV09   E2B939   A0A1B6CFH1   A0A026WJ10   A0A151WMA7   A0A1W4WNC6   Q16HY6   A0A195CVZ5   A0A182GNI7   A0A0P5IZX3   A0A0P4ZL77   A0A0N8CE32   A0A0P5GWL8   A0A1Y1KMU0   A0A0P5D3C7   A0A0P5U404   A0A158NQY5   A0A195B181   A0A0P5W820   W0G1S3   A0A0N7ZPY9   A0A0J7KNJ1   A0A0P5TR73   A0A1A9WFM4   A0A1I8NHV0   A0A0P6HPP6   A0A0L0CKM3   A0A0P6B8N3   A0A154NWP0   E9G042   A0A1I8NR30   A0A182LT64   A0A182NNR0   U4U246   A0A182R1P3   N6U271   A0A0P5T9F8   A0A1B0EZ12   A0A182QC42   A0A2P8YZR1   A0A0P4W5B8   J9K2N2   A0A1A9Z6J4   A0A336M1I0   A0A2S2QQ06   A0A1B0CSY2   A0A182K5R7   A0A2S2P4J8   K7J5Y2   A0A1A9V0E6   A0A1B0GGC2   A0A182HQZ9   W8B8N8   A0A3B0JPJ7   A0A2H8TKT2   B4JI38   B4N8C8   A0A182KJC0   A0A1B0BY84   A0A182XH75   Q7Q0X4   A0A0L7RHD9   A0A0M4EWF7   B3LXF5   A0A1B0GJI6   A0A0K8VZ37   A0A0A1XFC8   Q294L6   B4GMX7   A0A1A9YI34   A0A0K8VH25   A0A1W4VLG4   A0A182UJ78   B4R0A7   A0A0A1XE16   B4M0V2   A0A0P5VN03   A0A0P5S539   A0A0P5KYM9  

EC Number

2.3.1.225

Pubmed

19121390    26354079    23622113    26227816    24845553    18362917    + More
19820115    20798317    21719571    21282665    24508170    30249741    17510324    26483478    28004739    21347285    24446543    25315136    26108605    21292972    23537049    29403074    20075255    24495485    17994087    20966253    12364791    25830018    15632085   

EMBL

BABH01001356    NWSH01000056    PCG80108.1    ODYU01004365    SOQ44167.1    KQ459606    + More
KPI91112.1    GAIX01013896    JAA78664.1    KQ460947    KPJ10519.1    JTDY01000087    KOB78957.1    KK852942    KDR13513.1    KQ971323    EFA00823.2    GEBQ01027265    JAT12712.1    LJIG01016189    KRT81348.1    NEVH01017580    PNF23769.1    GEDC01030591    JAS06707.1    GL442691    EFN63163.1    KQ979608    KYN20433.1    GL888243    EGI64029.1    PNF23771.1    KQ981965    KYN31882.1    GL765434    EFZ16426.1    DS232168    EDS36552.1    GECZ01008371    JAS61398.1    GBYB01012695    JAG82462.1    GL446425    EFN87805.1    GEDC01025116    JAS12182.1    KK107182    QOIP01000003    EZA55983.1    RLU24571.1    KQ982944    KYQ48973.1    CH478129    EAT33871.1    KQ977220    KYN04805.1    JXUM01076346    JXUM01076347    KQ562940    KXJ74771.1    GDIQ01208255    JAK43470.1    GDIP01213080    JAJ10322.1    GDIP01140791    LRGB01001581    JAL62923.1    KZS11150.1    GDIQ01234752    JAK16973.1    GEZM01085169    JAV60157.1    GDIP01161837    JAJ61565.1    GDIP01118232    JAL85482.1    ADTU01023704    KQ976691    KYM77959.1    GDIP01091045    JAM12670.1    KF419296    AHF48760.1    GDIP01224025    JAI99376.1    LBMM01004972    KMQ91943.1    GDIP01125045    JAL78669.1    GDIQ01016053    JAN78684.1    JRES01000266    KNC32815.1    GDIP01024858    JAM78857.1    KQ434775    KZC04096.1    GL732528    EFX87462.1    AXCM01000888    KB631811    ERL86353.1    APGK01042723    KB741007    ENN75635.1    GDIP01135489    JAL68225.1    AJVK01006458    AXCN02001978    PYGN01000264    PSN49729.1    GDRN01086240    JAI61209.1    ABLF02036425    UFQT01000320    SSX23191.1    GGMS01010407    MBY79610.1    AJWK01026773    GGMR01011207    MBY23826.1    CCAG010014737    APCN01001629    GAMC01011585    GAMC01011583    JAB94972.1    OUUW01000008    SPP84065.1    GFXV01002457    MBW14262.1    CH916369    EDV92919.1    CH964232    EDW81379.1    JXJN01022520    AAAB01008980    EAA14606.3    KQ414591    KOC70290.1    CP012526    ALC47867.1    CH902617    EDV42799.1    AJWK01021796    GDHF01008198    JAI44116.1    GBXI01005104    JAD09188.1    CM000070    EAL28948.1    CH479185    EDW38201.1    GDHF01014152    JAI38162.1    CM000364    EDX12032.1    GBXI01011022    GBXI01005116    JAD03270.1    JAD09176.1    CH940650    EDW68411.1    GDIP01112338    JAL91376.1    GDIQ01092897    JAL58829.1    GDIQ01177404    JAK74321.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000037510    UP000027135    + More
UP000007266    UP000235965    UP000000311    UP000078492    UP000007755    UP000078541    UP000002320    UP000008237    UP000053097    UP000279307    UP000075809    UP000192223    UP000008820    UP000078542    UP000069940    UP000249989    UP000076858    UP000005205    UP000078540    UP000036403    UP000091820    UP000095301    UP000037069    UP000076502    UP000000305    UP000095300    UP000075883    UP000075884    UP000030742    UP000075900    UP000019118    UP000092462    UP000075886    UP000245037    UP000007819    UP000092445    UP000092461    UP000075881    UP000002358    UP000078200    UP000092444    UP000075840    UP000268350    UP000001070    UP000007798    UP000075882    UP000092460    UP000076407    UP000007062    UP000053825    UP000092553    UP000007801    UP000001819    UP000008744    UP000092443    UP000192221    UP000075902    UP000000304    UP000008792   

PRIDE

H9IUC1   

Pfam

PF05746   DALR_1        + More
PF00750   tRNA-synt_1d
PF15911   WD40_3
PF01529   DHHC

Interpro

IPR001278   Arg-tRNA-ligase        + More
IPR014729   Rossmann-like_a/b/a_fold       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR008909   DALR_anticod-bd       
IPR035684   ArgRS_core       
IPR001412   aa-tRNA-synth_I_CS       
IPR011990   TPR-like_helical_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR039468   WDR19_WD40_rpt       
IPR040379   WDR19/dyf-2       
IPR001594   Palmitoyltrfase_DHHC       

SUPFAM

SSF47323   SSF47323       

Gene 3D

3.40.50.620     1.25.40.10     2.130.10.10    

CDD

cd00671  ArgRS_core

ProteinModelPortal

H9IUC1   A0A2A4K838   A0A2H1VTM0   A0A194PD07   S4NNK3   A0A194QZ07   + More
A0A0L7LU28   A0A067QW94   D6WDT1   A0A1B6KMN9   A0A0T6B271   A0A2J7Q5A9   A0A1B6BZL1   E2ATT0   A0A195E5J6   F4WPD4   A0A2J7Q5B2   A0A195EVF0   E9ISP6   B0WXM2   A0A1B6GG27   A0A0C9RV09   E2B939   A0A1B6CFH1   A0A026WJ10   A0A151WMA7   A0A1W4WNC6   Q16HY6   A0A195CVZ5   A0A182GNI7   A0A0P5IZX3   A0A0P4ZL77   A0A0N8CE32   A0A0P5GWL8   A0A1Y1KMU0   A0A0P5D3C7   A0A0P5U404   A0A158NQY5   A0A195B181   A0A0P5W820   W0G1S3   A0A0N7ZPY9   A0A0J7KNJ1   A0A0P5TR73   A0A1A9WFM4   A0A1I8NHV0   A0A0P6HPP6   A0A0L0CKM3   A0A0P6B8N3   A0A154NWP0   E9G042   A0A1I8NR30   A0A182LT64   A0A182NNR0   U4U246   A0A182R1P3   N6U271   A0A0P5T9F8   A0A1B0EZ12   A0A182QC42   A0A2P8YZR1   A0A0P4W5B8   J9K2N2   A0A1A9Z6J4   A0A336M1I0   A0A2S2QQ06   A0A1B0CSY2   A0A182K5R7   A0A2S2P4J8   K7J5Y2   A0A1A9V0E6   A0A1B0GGC2   A0A182HQZ9   W8B8N8   A0A3B0JPJ7   A0A2H8TKT2   B4JI38   B4N8C8   A0A182KJC0   A0A1B0BY84   A0A182XH75   Q7Q0X4   A0A0L7RHD9   A0A0M4EWF7   B3LXF5   A0A1B0GJI6   A0A0K8VZ37   A0A0A1XFC8   Q294L6   B4GMX7   A0A1A9YI34   A0A0K8VH25   A0A1W4VLG4   A0A182UJ78   B4R0A7   A0A0A1XE16   B4M0V2   A0A0P5VN03   A0A0P5S539   A0A0P5KYM9  

PDB

1F7V     E-value=3.58046e-58,     Score=569

KEGG

101746251    K01887 arginyl-tRNA synthetase [EC:6.1.1.19] | (RefSeq) probable arginine--tRNA ligase, mitochondria

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0004814   GO:0006420   GO:0005524   GO:0035721   GO:0005929   GO:0032543   GO:0005739   GO:0016021   GO:0019706   GO:0000166   GO:0004812   GO:0006418   GO:0005488   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR11956   PTHR14920  

Length:

365

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1373

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02519

outside

1  -  365

 

 

Pi

179.528769

Theta

184.503173

Tajima's D

-0.380806

CLR

0.290388

CSRT

0.276486175691215

Interpretation

Uncertain