Gene

KWMTBOMO07647

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr13(-):3128501-3129315      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.352 Nuclear   Reliability : 2.028

CDS

ATGGGAGTGCCAGACAGACTCGTGCTCATCATACAAGACTACTTGTCGAACCGTTCGTTCCGATATCGAGTCGAGGGAACGCGTTCCCGGCCCCGTCACGTCACAGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTACTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTGGCGCTCTTCGCCGATGACACCGCCATCTACTACTCGTGTAGGAAGAAGGCGTTGCTTCATCGACGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAACCCCACGAAAAGCACAGCGGTGCTCTTCAAAAGGGGTCGCCCTCCGAACACCACGCTGAGCATCCCTCTCCCGACTAAGCGCGTCAACACCTCCGCCTCCGCCATTCGCCCAATCACGATGTTCGACCAGCCCATACCGTAG

Protein

MGVPDRLVLIIQDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTKRVNTSASAIRPITMFDQPIP

Uniprot

K9N5J5   Q9BPQ0   Q9XXW0   Q93137   A0A194Q1H8   A0A0N0PA09   + More
A0A0N1PFV1   O96544   O96546   A0A2J7RS77   A0A2J7RB54   A0A2J7RPU2   A0A2J7Q2R1   A0A2J7PMP6   A0A2J7Q059   A0A2J7RIW7   A0A2J7QUJ9   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q4F7   A0A2J7PMP9   A0A2J7R6U1   A0A2J7Q0Q6   A0A2J7R2E1   A0A2J7QY69   A0A2J7RKP3   A0A2J7PBY3   A0A2J7PDS9   A0A2J7QFL0   A0A2J7RE85   A0A2J7QR37   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2J7Q5G9   A0A2J7QEZ4   A0A2J7PU96   J9LFC9   J9KEU4   X1WT09   J9JS95   J9KPF0   X1WXU3   J9LR29   A0A2J7RMG0   A0A2J7PE07   X1WSV5   X1WPJ9   A0A2S2PR14   A0A2S2QV02   A0A087U2S8   A0A2S2N7M6   X1WWC4   J9KKL3   X1XFE3   X1WMU5   J9KLQ2   J9LC21   X1WLB2   X1XEL2   A0A2S2NJB5   X1X6V1   A0A1B6EG44   X1WXE6   A0A0C9RJA4   X1WZH0   X1X5E5   A0A224XIV5   X1WPP5   J9KV82   X1WN18   A0A139W9F6   A0A1B6DFT6   A0A224XF24   X1WXR6   D7GYH8   A0A1B6LG18   J9KGI9   A0A1Y1NA23   J9M004   A0A139W8G9   A0A139W8R7   J9JKP0   A0A2S2Q823   J9KC83   A0A087V0P8   A0A139WA11   A0A2S2RAN7   D7GYA5   D6WFI4   A0A2J7QK75   X1WVE4   A0A224X6W2   A0A2S2PWA8   J9KVX5   A0A087T1W0   X1WUP5   V5GNF3   A0A069DX78   A0A224X6S1  

Pubmed

23652563    10333566    26354079    10380107    18362917    19820115    + More
28004739    26334808   

EMBL

KC165845    AFY12622.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
U07847    AAA17752.1    KQ459580    KPI99178.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081101    AAC72919.1    AF081103    AAC72921.1    NEVH01000280    PNF43672.1    NEVH01005938    PNF38077.1    NEVH01001355    PNF42855.1    NEVH01019080    PNF22876.1    NEVH01023962    PNF17612.1    NEVH01020071    PNF21969.1    NEVH01003017    PNF40781.1    NEVH01010546    PNF32261.1    NEVH01007443    PNF35684.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01018383    PNF23463.1    NEVH01023961    PNF17613.1    NEVH01006754    PNF36554.1    NEVH01019964    PNF22161.1    NEVH01007838    PNF34986.1    NEVH01009134    PNF33528.1    NEVH01002716    PNF41415.1    NEVH01027074    PNF13841.1    NEVH01026154    PNF14491.1    NEVH01014858    PNF27387.1    NEVH01005277    PNF39135.1    NEVH01011985    PNF31054.1    NEVH01017470    PNF24199.1    NEVH01019376    PNF22596.1    NEVH01017559    PNF23833.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01021205    PNF19912.1    ABLF02023911    ABLF02040650    ABLF02040651    ABLF02056776    ABLF02056778    ABLF02028535    ABLF02028545    ABLF02038199    ABLF02038200    ABLF02038201    ABLF02038202    ABLF02038205    ABLF02008933    ABLF02025082    ABLF02039175    ABLF02041809    NEVH01002556    PNF42024.1    NEVH01026119    PNF14565.1    ABLF02016494    ABLF02066976    ABLF02058433    GGMR01019198    MBY31817.1    GGMS01012362    MBY81565.1    KK117880    KFM71667.1    GGMR01000167    MBY12786.1    ABLF02003961    ABLF02059872    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02029291    ABLF02014862    ABLF02014866    ABLF02061908    ABLF02030319    ABLF02030320    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02042518    ABLF02057746    ABLF02007289    ABLF02042519    GGMR01004661    MBY17280.1    ABLF02026876    GEDC01006530    GEDC01000386    JAS30768.1    JAS36912.1    ABLF02016634    GBYB01008290    JAG78057.1    ABLF02034467    ABLF02037507    ABLF02041173    ABLF02054117    GFTR01007904    JAW08522.1    ABLF02063914    ABLF02036077    ABLF02036081    ABLF02021177    ABLF02027367    ABLF02066338    KQ972290    KYB24559.1    GEDC01012749    JAS24549.1    GFTR01008038    JAW08388.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    KQ973427    EFA13419.2    GEBQ01017345    JAT22632.1    ABLF02021181    ABLF02027365    ABLF02027369    ABLF02052813    ABLF02061832    GEZM01008457    JAV94772.1    ABLF02036084    KQ973342    KXZ75569.1    KQ973073    KXZ75680.1    ABLF02027009    ABLF02027012    GGMS01004685    MBY73888.1    ABLF02033757    KL813758    KFM83187.1    KQ971729    KYB24751.1    GGMS01017914    MBY87117.1    KQ973363    EFA13335.2    KQ971327    EFA00927.1    NEVH01013277    PNF28984.1    ABLF02004189    ABLF02005775    ABLF02015592    ABLF02057149    ABLF02058897    GFTR01008260    JAW08166.1    GGMS01000625    MBY69828.1    ABLF02010251    ABLF02035981    KK113014    KFM59099.1    ABLF02010352    ABLF02010355    ABLF02058900    GALX01005359    JAB63107.1    GBGD01000389    JAC88500.1    GFTR01008271    JAW08155.1   

Proteomes

UP000053268    UP000235965    UP000007819    UP000054359    UP000007266   

PRIDE

K9N5J5    Q9BPQ0    Q9XXW0    Q93137   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF13843   DDE_Tnp_1_7
PF10551   MULE
PF13358   DDE_3
PF17917   RT_RNaseH

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR036875   Znf_CCHC_sf       
IPR006579   Pre_C2HC_dom       
IPR029526   PGBD       
IPR018289   MULE_transposase_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR038717   Tc1-like_DDE_dom       
IPR001878   Znf_CCHC       
IPR041373   RT_RNaseH       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

K9N5J5   Q9BPQ0   Q9XXW0   Q93137   A0A194Q1H8   A0A0N0PA09   + More
A0A0N1PFV1   O96544   O96546   A0A2J7RS77   A0A2J7RB54   A0A2J7RPU2   A0A2J7Q2R1   A0A2J7PMP6   A0A2J7Q059   A0A2J7RIW7   A0A2J7QUJ9   A0A2J7R4B7   A0A2J7RM10   A0A2J7Q4F7   A0A2J7PMP9   A0A2J7R6U1   A0A2J7Q0Q6   A0A2J7R2E1   A0A2J7QY69   A0A2J7RKP3   A0A2J7PBY3   A0A2J7PDS9   A0A2J7QFL0   A0A2J7RE85   A0A2J7QR37   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2J7Q5G9   A0A2J7QEZ4   A0A2J7PU96   J9LFC9   J9KEU4   X1WT09   J9JS95   J9KPF0   X1WXU3   J9LR29   A0A2J7RMG0   A0A2J7PE07   X1WSV5   X1WPJ9   A0A2S2PR14   A0A2S2QV02   A0A087U2S8   A0A2S2N7M6   X1WWC4   J9KKL3   X1XFE3   X1WMU5   J9KLQ2   J9LC21   X1WLB2   X1XEL2   A0A2S2NJB5   X1X6V1   A0A1B6EG44   X1WXE6   A0A0C9RJA4   X1WZH0   X1X5E5   A0A224XIV5   X1WPP5   J9KV82   X1WN18   A0A139W9F6   A0A1B6DFT6   A0A224XF24   X1WXR6   D7GYH8   A0A1B6LG18   J9KGI9   A0A1Y1NA23   J9M004   A0A139W8G9   A0A139W8R7   J9JKP0   A0A2S2Q823   J9KC83   A0A087V0P8   A0A139WA11   A0A2S2RAN7   D7GYA5   D6WFI4   A0A2J7QK75   X1WVE4   A0A224X6W2   A0A2S2PWA8   J9KVX5   A0A087T1W0   X1WUP5   V5GNF3   A0A069DX78   A0A224X6S1  

KEGG

105842435    no KO assigned | (RefSeq) uncharacterized LOC105842435

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

152

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02323

Exp number, first 60 AAs:

0.02254

Total prob of N-in:

0.03704

outside

1  -  152

 

 

Pi

22.847709

Theta

17.118992

Tajima's D

-0.641197

CLR

0.293369

CSRT

0.214689265536723

Interpretation

Uncertain