SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07646
Annotation
PREDICTED:_uncharacterized_protein_LOC106713896?_partial_[Papilio_machaon]
Location in the cell
Mitochondrial   Reliability : 2.039
 

Sequence

CDS
ATGGAATTTGGTGTTGATAAATGTGCGTTCATAGATGTACAGAGAGGTAAAGTTGTAAGCTCAGATTGCTTACTACTTAACCATAGTGTGGTCCTCAAGTCTCTTTGTGAATCGGAAACTTACAAGTACCTTGGTATGTTTGAAGTGCTGAATATTGTTGACGCAGATATGAAACAATCGTTTAGAGATCGGTTTTTTGGTCGTCTTATAAAGGTCTTAAAAAGCCATTTATCAGGCGGAAACAAAATCCGAGCGTTTAATGGTTGGGTCATGCCTATGTTAACATATTCCTTTGGCATACTAAGGTGGACGCAATCAGAGCTGGACGTACTGGACAGAAAAGTCAGGCGATTGTTAACGGCATACAGAATGCATCATCCACGTTCGTCTGTAAAGAGGTTGTATATTCCTCGGAAATGTGGGGGTCGTGGTATTTTGAATGCCAAGGATCTACATAACCGAGAGATATACAACCTTAGGGAATATTTCCTTAAGATGAACGTGAATATGTATCGGGATGTCGTTGCAGTCGATAAGGGGCTAACTCCGCTATCCTTAGCTAACGGGAATTGGAAGAGGCTGAAGGTAGAGGGTATTTCAGATCGCATAACCGTATGGAGGAGCAAGGAGTTACACGGTAGGTTCTACCGGGCTCTCACAGGGCCTGATGTAGACCAATTAGCTTCCGTGGCCTGGTTACGATTCAGTAACCTCTTTGGGGAAACTGAAGGTTTTATCTTTGCAATTATGGACGAAGTTATCATGACGAACAACTACCGGAAATATATACTAAAGGATGGGACGGTCGACATTTGTCGGGCATGCCACCGTCCGGGAGAGTCTATTAGACATATTGTTTCTGGCTGTTCTCGGTTTGCTAACGGCGAGTACTTGCATAGACATAACCAAGTGGCTAGGATTATCCATCAACAACTTGCTCTGAAATATGGTTTTCTTGATTCTGCTGTACCTTATTACCAATACCAACCTCAACCAGTTCTTGATAATGGTCATGTTACGCTCTACTGGGACCGATCTATTATCACGGATAGGTATATTGTTGCCAATAAACCTGATATTGTGATAATAGATCGATCTGCGCGTCGAGCAGTGTTGGTTGATGTCACCATTCCTCATGACGAGAACCTCGTGAAGGCAGAAAAGGACAAATTAATAAAATATTTAGACCTGGCCCACGAGACTACCGCCATGTGGCATGTTGATTCAACCATCATTGTACCAATAGTTGTATCGGTACACGGCTTGATAGCGAAAAGTTTCGATCAACATCTCAAGAAACTTTCGTTATCCAGCTGGGTTAAGGGCCTAATACAGAAAGCAGTTATCCTCGATACTGCACGCATTGTGAGGAGGTTTCTCACCCTGGAGTCCTAA
Protein
MEFGVDKCAFIDVQRGKVVSSDCLLLNHSVVLKSLCESETYKYLGMFEVLNIVDADMKQSFRDRFFGRLIKVLKSHLSGGNKIRAFNGWVMPMLTYSFGILRWTQSELDVLDRKVRRLLTAYRMHHPRSSVKRLYIPRKCGGRGILNAKDLHNREIYNLREYFLKMNVNMYRDVVAVDKGLTPLSLANGNWKRLKVEGISDRITVWRSKELHGRFYRALTGPDVDQLASVAWLRFSNLFGETEGFIFAIMDEVIMTNNYRKYILKDGTVDICRACHRPGESIRHIVSGCSRFANGEYLHRHNQVARIIHQQLALKYGFLDSAVPYYQYQPQPVLDNGHVTLYWDRSIITDRYIVANKPDIVIIDRSARRAVLVDVTIPHDENLVKAEKDKLIKYLDLAHETTAMWHVDSTIIVPIVVSVHGLIAKSFDQHLKKLSLSSWVKGLIQKAVILDTARIVRRFLTLES

Summary

Pfam
PF00078   RVT_1
Interpro
IPR000477   RT_dom        + More
IPR001611   Leu-rich_rpt       

Ontologies

Topology

Length:
464
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.29934
Exp number, first 60 AAs:
0.00023
Total prob of N-in:
0.01442
outside
1  -  464
 
 

Population Genetic Test Statistics

Pi
75.664056
Theta
47.9762
Tajima's D
1.635124
CLR
0.976035
CSRT
0.817259137043148
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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