Silkworm Genome Informatics Database

Gene

KWMTBOMO07621

Pre Gene Modal

BGIBMGA010729

Annotation

SNMP2_HELVI_RecName:_Full%3DSensory_neuron_membrane_protein_2;_short=HvirSNMP-2

Location

Bomo_Chr13(-):1846259-1873989 View in EpiBrowser

Full name

Sensory neuron membrane protein 2

Location in the cell

PlasmaMembrane Reliability : 1.507

CDS

ATGATTCGTGTGGAGGTAAATTTCAGAAACGAAAATTGGTCAGAAGTTTTGTGGAAACTGCAGCTCACCCTGAACGTTACGAAACAAAAGTCCACTCAATATTCACCTTTATATTTGTTAATTGGTAGCGATGCTGTGACGCCCGTCATTCGTTCCGTTGTACGCGATGTGGCTCTAGAAGGAACAAGTGCCAACAGAGAAACCTTACGCGAGCTTGCCCGACAAAGAGCTTCTCAACTGCTGGACAAAAACCGAAAACAGCAGGACACTCGAGTAAATGAACGGCGCAAACCCCCGCGTACTTTCCATGAAAACGACGTGGTCTTCGTGCATAAGAATAGCCAGTCTGTTGGAAAGCTGGATTCTGGTATGCGTGGCCCGTACAAAATAGTGCGTGCGCTGCCACATGGACGTTATGAACTGAAGCTTCTTTCTGGCTCACTTGGGAAGACCACGGAAGCTGCTGCAGAATTTATAAGTGCCTGGCACGGAGAGTGGACGCCGGATGTGTGCACCGCATTTTTCGAGTGTGATGAGAATAGCTCTGAGGAAGGTATTGTCGCCGGTCCATCACACCGCCATGACGACATAGTACCTCTAGACGGACCTATTAATGCGGGCGAGGACGCTCCGCCGTCAGGAGAGGCCGTGTTAGAAGATGATGATGACATTGGACGCAACGTTCAGATATCAAACACTTCGAAGATGTACGATAAATGGGTGAAGCTCCCGATGCCTTTGGACTTCAAAATCTACGTTTTCAATGTGACCAACCGCGACGCTATTAATCAAGGAGAAAAACCGAATCTAAAGGAAATTGGACCCTATGTGTACAAACAGTACAGGGAGAAAATTATATTGGGTTACGGCGATAACGATACTATTAAATATAATCTAAAGAAAACATTCGTGTTCGATCCTGTAGCTTCGGGCGACCTGAGGGAAGACGACGAACTCACTGTCATCAATTTCTCTTACATGGCTGCGATTATATCAGTCCAAGAAATGATGCCAGCTGCTGTCGGAATGATCAACAGAGCATTAGAACAATTTTTCACCAACCTCACCGACCCGTTCCAGACCGTCAAAGTGAAAGATCTCTTCTTCGATGGCTTATTTCTGAACTGCGAAGGAGATAATACAGCTTTAGGGTTAATCTGCGGCAAGATTCGTGCGGAAAAGCCTCCAACGATGAGAATATCGAAAAGCGCCAATGGATTTTATTTCTCCATGTTCTCTCATATAAGTTCTCAAGAATCCAATAACCGTTCTTACAGATCGCTGTTCGCAAGTCTTGTAGGGAAAGATACCCTTTTCAACATCAGCACTTATTATTACGAAATATCTGACATGACTCTGGGTTCGAAGAGCGCTAATCCTGACAACAAATGTTTCTGTAAAAGAAACTGGAGCGTGAAGCACGACGGATGTCTCCTCATGGGCGTGCTGAACTTAGCGCCTTGCCAAGGAGCTCCTGCCATTGCTTCCTTACCGCATTTCTACTTGGGCTCTGACGAACTAGCTGACTTTTTCGGTGACGGAATTAAGCCTGACAAAGAGAAGCATAACACTTATGTTCACCTAGATCCAATAACTGGAGTAGTAATAAAAGGTGTGAAACGTCTTCAGTTCAACATAGAACTTCGCAATGTACCATCGGTGCCACAGCTCAAAGAAGTACCCTCAGGGCTGTTTCCTTTGCTCTGGATTGAAGAGGGAGCGGAAATACCAGAGTGGTTACGCAAAGAAATAATGGACTCGCACACGATGCTGTGGTACGTGGATGCCGCCCGTTGGCTCGTGCTGGCGGTGGCTGTGGTGGCGGTGCTGGTGTCGGCTACGCTGGTGGCGAGATCAGCAGCTCTCATACCGTGGCCTCGCAACAGCAACTCAATCAGTTTTATATTAGGAAACAGTGTTAATACAAGTAAAGTACATTCGTAG

Protein

MIRVEVNFRNENWSEVLWKLQLTLNVTKQKSTQYSPLYLLIGSDAVTPVIRSVVRDVALEGTSANRETLRELARQRASQLLDKNRKQQDTRVNERRKPPRTFHENDVVFVHKNSQSVGKLDSGMRGPYKIVRALPHGRYELKLLSGSLGKTTEAAAEFISAWHGEWTPDVCTAFFECDENSSEEGIVAGPSHRHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGRNVQISNTSKMYDKWVKLPMPLDFKIYVFNVTNRDAINQGEKPNLKEIGPYVYKQYREKIILGYGDNDTIKYNLKKTFVFDPVASGDLREDDELTVINFSYMAAIISVQEMMPAAVGMINRALEQFFTNLTDPFQTVKVKDLFFDGLFLNCEGDNTALGLICGKIRAEKPPTMRISKSANGFYFSMFSHISSQESNNRSYRSLFASLVGKDTLFNISTYYYEISDMTLGSKSANPDNKCFCKRNWSVKHDGCLLMGVLNLAPCQGAPAIASLPHFYLGSDELADFFGDGIKPDKEKHNTYVHLDPITGVVIKGVKRLQFNIELRNVPSVPQLKEVPSGLFPLLWIEEGAEIPEWLRKEIMDSHTMLWYVDAARWLVLAVAVVAVLVSATLVARSAALIPWPRNSNSISFILGNSVNTSKVHS

Description

Plays an olfactory role that is not restricted to pheromone sensitivity (By similarity). May play a role in the elimination of lipophilic components from the sensillum lymph.

Similarity

Belongs to the CD36 family.

Keywords

Cell membrane Disulfide bond Glycoprotein Membrane Olfaction Receptor Sensory transduction Transmembrane Transmembrane helix

Feature

chain Sensory neuron membrane protein 2

Uniprot

A0A1V1WBQ1 B2RFN2 A0A2A4K481 A0A1L2BLC1 A0A1W5LB37 A0A0H4CQN8 + More
A0A2H4G2C3 J9Z3X0 M1PR69

Pubmed

18209018 23454276

EMBL

GENK01000128 JAV45785.1 AM905328 CAP19028.1 NWSH01000168 PCG78836.1 + More
KT282969 ALS03935.1 KT991367 ANA75033.1 KP684219 AKN78949.1 KY130485 APG32553.1 JX401525 AFS50074.1 KC182741 AGF87120.1

Proteomes

UP000218220

PRIDE

B2RFN2

Pfam

PF01130 CD36

Interpro

IPR002159 CD36_fam + More
IPR005429 LimpII

ProteinModelPortal

A0A1V1WBQ1 B2RFN2 A0A2A4K481 A0A1L2BLC1 A0A1W5LB37 A0A0H4CQN8 + More
A0A2H4G2C3 J9Z3X0 M1PR69

PDB

6I2K E-value=7.51058e-30, Score=328

KEGG

101746805 K12384 lysosome membrane protein 2 | (RefSeq) sensory neuron membrane protein 2-like

PATHWAY

04142 Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0005044 GO:0005764 GO:0016021 GO:0050896 GO:0007608 GO:0005886 GO:0016020 GO:0015991 GO:0033177 GO:0033179 GO:0015450 GO:0005737 GO:0005488 GO:0022891 GO:0003707 GO:0051537 GO:0003676

PANTHER

PTHR11923

Subcellular location

Cell membrane

Length:

647

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.45169

Exp number, first 60 AAs:

0.06682

Total prob of N-in:

0.06267

outside

1 - 599

TMhelix

600 - 622

inside

623 - 647

Pi

217.34781

Theta

156.624632

Tajima's D

0.955883

CLR

0.876126

CSRT

0.648117594120294

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics