Gene

KWMTBOMO07620  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000839

Annotation

PREDICTED:_periodic_tryptophan_protein_2_homolog_[Bombyx_mori]

Location

Bomo_Chr13(+):1815810-1832924      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.25 PlasmaMembrane   Reliability : 1.06

CDS

ATGAAGTTTAATTATAAGTTTCAAAATTTACTCGGAACAGTTTACCGTAAAGGTGATGTGCTCTTCAGTAAAGATGGAAATTGCGTTATCAGTCCAGTTGGTAACAGAATAACCATATATAATTTGAAACAGAATAAAAGTAACACTCTATCATTTGAAAGTCACTACAATTATACAGCTGTTGATATTGCACCAAATGGAATGACATTGTTGGCTGTTACGGAAAAGGGTGAAGCACAAATTATAAGTCTTACAACTTCTGTGGTGTTACACAAGTATAAGTTCAAGCAGCAAGTGAATGCGGTTAAGTTTAGTCCTGATGGAAAATACTTTGCCGTGTGCTGCGATAATACAGTATTCGTGATGACAGCACCGGTACATTTCACCGGCGAATACCGGCCCTTCATCATGAAACGTGTCTTCAAGAAAGCCCTAGACGAAGTGACGTGTCTGGACTGGTCGTCCTGCTCGAGACTCCTGGCGGTCGGATCGAAAGACACGACAACGAAGATTCACACCGTCGAATATTTAGAGAACATCACTATGTATTCGCTCAGCGGACACACAGATAAAATTATCGGTGTCTTCTTCGAGAGGAAAAGCTTAGATCTGATAACGGTCAGTAGGAACGGTCAGCTGTGCTTGTGGGAGGCCAGTATAGATGCCGATGAGCTTGCAGTGAAGCAGGATGACACGTCGCGCAAGAAACGAGTGAGACTGCAGAACGAGGGTAATCTAGAGGAAGAATTTGACGCAAAGGATGATATTGAGAAAGAAAAGGAATATGACAGCGACAGAGACGCGGAACAAGAACAGAACAATTCGAAGGTTAACTCTGAAGAGAACGATAAGAGATTGATGTACAAAAAACTGGGGAGGCACTACATCGGCGATGCGATACGCAACGCCGATCGGAAGGTCAAGCTCACGGCCGTTCAGTACCACAAGGAGAATAAGCTGCTAGTGACCGGTTTCTCGAGCGGTCTGTTCTTCTTGCACGAGATGCCGGACGTGAATCTGATCCACACGCTCAGCATATCGGAGCACCGCATCAGCAGCATCAGCGTGTCGCCGCCCGGGGACTGGATCGCGTTCGCCTGTCCCAACATCGGTCAGCTGCTGGTCTGGGAGTGGCAAAGCGAGCAATACGTGATGAAGCAGCAGGGTCACTCGTTGGACATGACGTGCCTGGCGTACTCGCCGGACGGGCTGCACGTCGTGACCGGGGGTTTCGACGGTAAAGTGAAGGTCTGGAACACGACGAACGGCTTCTGCTTCGTGACCTTCCACGAGCACAAGGCGACCGTGAGCGGCGTCACGTGCAGCGCCAACAAGAAGTTCTTCGTGTCGTCGTCGCTAGATGGCACTGTACGATGCTACGACTTGACCAGATACCGCAACTTCCGTACGCTGACGTCACCCAGCCTGGTGCAGTTCAGCTGTGTGGCGCTGGACTCCAGCGGAGAGTTCTGTGCGGCCGGCGGTCAGGACGTCTTCGAAATATTCGTTTGGTCGATCAAGTTCGGGAAGTTGCTAGAGGTTCTAGGTGGTCACGAGGCGCCGGTGTCGAGTCTCGCGTTCAGCCCGACGCTGACCAGCACGCGCCTGGCCTCCGCCAGCTGGGACGGGACGGTCCGTCTGTGGGACTGCATCGACCGGGAGGTGCAGTGCGAGCCGATCCGACTCAACTCTGACGCGCTGCAAGTCGCCTTCAGACCCGACGGGGAAGAGATCGCGGTGTCGACCCTGGACGGCAACATAACGTTCTTCGAGCCGAGCACGTGCGAGCAGACGGGTAGCGTGGAGGGCAGGTCCGACCTGGGCTCTGGGAGGGCAGAAACCGACCTGGTCACGCCGCAGACACTCTTGAAAACCAAAGCGTTCACAACAATATGCTATTCTGCTGACGGTACCTGCATACTGGGAGGCGGCAACTCGAAGAACGTTTGTCTTTATAGCGTGAAGGATTCCGTACTCATCAAGAAGTTTGTCGTCACGGAAAATAGATCTTTGGATGCTGTTAATGACTTTGTGAATCGCCGCAACCTCACGGAGTTCGGGAATATGGCGCTACTGGAAGAGAGGGAGGATCTGGAAGGAGGAAACGTCAACATCCGATTGCCGGGCGTCAAGACCGGGGACATGGCCGATAGGAACGTCAAACCTGAGGTCCGCGTGTACTGCGTCCGGTTCTCGCCGACCGGGGAGAGCTTCGCGGTGGCCGCCACGGAGGGCCTGATGCTGTACAGCCAGAACGCCGGCCTCGACGGTACTTTCAGGCCGTATCGACTGGAGGCGACGTCAACGCCGGCCGCGGTGAGGCAGTCCCTCCGAGACGGCGCCTGGGGCTCCGCCCTCACCGGCGCCCTACAGCTGGCGGAGCAAGCGCTCATACAGGAGTGCCTTGAATCTGTGCCCACTAAAGACATATCCCTAACGGTATCGAGTCTAGACGAAGACTACGGCGACCGGCTGCTGAGCACGATAGCGCGCCTCCTCGAGGACAGCAGGCACGTGGAGCAGCTGCTGCACTGGACCACGGCGCTCGTGTCGACGGGGAGACACAAGTTCCCGCCGAGCGCGCTGCTCGCCGTAGAGAAAGTTCTGACCGTCAAATACTCGCAGTTGAGTAAAATGTAA

Protein

MKFNYKFQNLLGTVYRKGDVLFSKDGNCVISPVGNRITIYNLKQNKSNTLSFESHYNYTAVDIAPNGMTLLAVTEKGEAQIISLTTSVVLHKYKFKQQVNAVKFSPDGKYFAVCCDNTVFVMTAPVHFTGEYRPFIMKRVFKKALDEVTCLDWSSCSRLLAVGSKDTTTKIHTVEYLENITMYSLSGHTDKIIGVFFERKSLDLITVSRNGQLCLWEASIDADELAVKQDDTSRKKRVRLQNEGNLEEEFDAKDDIEKEKEYDSDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYIGDAIRNADRKVKLTAVQYHKENKLLVTGFSSGLFFLHEMPDVNLIHTLSISEHRISSISVSPPGDWIAFACPNIGQLLVWEWQSEQYVMKQQGHSLDMTCLAYSPDGLHVVTGGFDGKVKVWNTTNGFCFVTFHEHKATVSGVTCSANKKFFVSSSLDGTVRCYDLTRYRNFRTLTSPSLVQFSCVALDSSGEFCAAGGQDVFEIFVWSIKFGKLLEVLGGHEAPVSSLAFSPTLTSTRLASASWDGTVRLWDCIDREVQCEPIRLNSDALQVAFRPDGEEIAVSTLDGNITFFEPSTCEQTGSVEGRSDLGSGRAETDLVTPQTLLKTKAFTTICYSADGTCILGGGNSKNVCLYSVKDSVLIKKFVVTENRSLDAVNDFVNRRNLTEFGNMALLEEREDLEGGNVNIRLPGVKTGDMADRNVKPEVRVYCVRFSPTGESFAVAATEGLMLYSQNAGLDGTFRPYRLEATSTPAAVRQSLRDGAWGSALTGALQLAEQALIQECLESVPTKDISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRHKFPPSALLAVEKVLTVKYSQLSKM

Uniprot

H9IUA9   A0A2A4K3K0   A0A3S2NZ91   A0A2H1VD55   S4NTU2   A0A194QKM6   + More
A0A212EW49   A0A1Y1LGC0   A0A067RUU4   A0A088A433   A0A2J7PFL4   A0A2J7PFN0   A0A2A3EKM1   A0A0N0U661   A0A212F2V2   B0WV63   A0A1Q3F3C8   A0A336M1P9   U4TRW0   K7J0V2   E2AKD5   A0A1B6FJT0   A0A0P6JRM8   A0A182G4N1   A0A336M8R8   E9J0X9   A0A158N9M1   F4WYE7   B4KUC1   B3MIL2   A0A1W4VR95   A0A151ID36   B3NN43   A0A026W272   A0A3L8D4D7   Q7QE23   B4J9E2   A0A182WXZ0   B4LPI6   A0A182KV06   A0A3B0J467   A0A182I610   A0A084WUD3   A0A182YAC3   A0A182WE74   Q28XK7   A0A182M980   A0A182QYW6   A0A1A9Z1X3   A0A182KFQ3   A0A0L0C9K1   A0A182IUE7   A0A1B0C2F9   B4NN80   B4HN10   A0A2S2Q4N4   A0A0J9R9W9   A0A1B0FLN1   B4P826   B4GGA0   A0A2M4BC31   A0A1A9V1M5   A0A182FZS4   A0A2M4BC09   A0A2M4BC16   A0A182NPB0   A0A1A9W3Q6   A0A1I8PA59   A0A182RLU3   A0A182P7K7   E0VBH8   A0A1A9XUT3   A0A2M4AER8   A0A2M4AEP4   A0A0A1WXH6   W5JTG6   A0A034VCB5   A0A2M4AEQ4   Q5U0X8   A0A2H8TFM9   A0A0M5J9N8   A0A2R7W118   A0A0K8V7W6   J9K4S6   A0A1I8MQB5   A0A154NWD3   A0A1B6IQA5   W8BBA1   B4QAN9   A0A1J1IUP2   A0A0J7KSU4   U4U704   A0A224Z4V5   A0A0L7R5T6   A0A131YJY9   A0A293N6E6   A0A1E1XF76   A0A023GG76   A0A2R5LIA6  

Pubmed

19121390    23622113    26354079    22118469    28004739    24845553    + More
23537049    20075255    20798317    26999592    26483478    21282665    21347285    21719571    17994087    24508170    30249741    12364791    20966253    24438588    25244985    15632085    26108605    22936249    17550304    20566863    25830018    20920257    23761445    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    24495485    28797301    26830274    28503490   

EMBL

BABH01001466    BABH01001467    BABH01001468    NWSH01000168    PCG78835.1    RSAL01000017    + More
RVE52908.1    ODYU01001899    SOQ38757.1    GAIX01012091    JAA80469.1    KQ461198    KPJ06077.1    AGBW02012098    OWR45674.1    GEZM01058078    JAV71921.1    KK852457    KDR23609.1    NEVH01025655    PNF15134.1    PNF15136.1    KZ288219    PBC32250.1    KQ435737    KOX76902.1    AGBW02010668    OWR48075.1    DS232119    EDS35402.1    GFDL01013008    JAV22037.1    UFQS01000099    UFQT01000099    SSW99508.1    SSX19888.1    KB630186    KB632155    ERL83457.1    ERL89219.1    GL440262    EFN66077.1    GECZ01019319    JAS50450.1    GDUN01001117    JAN94802.1    JXUM01042554    KQ561329    KXJ78961.1    UFQT01000715    SSX26722.1    GL767538    EFZ13496.1    ADTU01009695    GL888441    EGI60755.1    CH933808    EDW09717.1    CH902619    EDV38088.1    KQ977991    KYM98308.1    CH954179    EDV56563.1    KK107502    EZA49696.1    QOIP01000014    RLU14873.1    AAAB01008848    EAA07023.4    CH916367    EDW01423.1    CH940648    EDW61245.1    OUUW01000001    SPP74162.1    APCN01003544    ATLV01027079    KE525423    KFB53827.1    CM000071    EAL26309.1    AXCM01001138    AXCN02001819    JRES01000735    KNC28885.1    JXJN01024516    CH964282    EDW85819.1    CH480816    EDW47314.1    GGMS01003494    MBY72697.1    CM002911    KMY92863.1    CCAG010020069    CM000158    EDW90073.1    CH479183    EDW35520.1    GGFJ01001442    MBW50583.1    GGFJ01001443    MBW50584.1    GGFJ01001444    MBW50585.1    DS235030    EEB10734.1    GGFK01005949    MBW39270.1    GGFK01005940    MBW39261.1    GBXI01010991    JAD03301.1    ADMH02000484    ETN66250.1    GAKP01019225    JAC39727.1    GGFK01005950    MBW39271.1    AE013599    BT016114    AAF58744.1    AAV36999.1    GFXV01001101    MBW12906.1    CP012524    ALC40668.1    KK854229    PTY13402.1    GDHF01017287    JAI35027.1    ABLF02039359    KQ434772    KZC03862.1    GECU01018605    JAS89101.1    GAMC01008055    JAB98500.1    CM000362    EDX06544.1    CVRI01000059    CRL03824.1    LBMM01003629    KMQ93304.1    KB632028    ERL88128.1    GFPF01010477    MAA21623.1    KQ414648    KOC66252.1    GEDV01009300    JAP79257.1    GFWV01023034    MAA47761.1    GFAC01001295    JAT97893.1    GBBM01003430    JAC31988.1    GGLE01005126    MBY09252.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000007151    UP000027135    + More
UP000005203    UP000235965    UP000242457    UP000053105    UP000002320    UP000030742    UP000002358    UP000000311    UP000069940    UP000249989    UP000005205    UP000007755    UP000009192    UP000007801    UP000192221    UP000078542    UP000008711    UP000053097    UP000279307    UP000007062    UP000001070    UP000076407    UP000008792    UP000075882    UP000268350    UP000075840    UP000030765    UP000076408    UP000075920    UP000001819    UP000075883    UP000075886    UP000092445    UP000075881    UP000037069    UP000075880    UP000092460    UP000007798    UP000001292    UP000092444    UP000002282    UP000008744    UP000078200    UP000069272    UP000075884    UP000091820    UP000095300    UP000075900    UP000075885    UP000009046    UP000092443    UP000000673    UP000000803    UP000092553    UP000007819    UP000095301    UP000076502    UP000000304    UP000183832    UP000036403    UP000053825   

PRIDE

H9IUA9    Q5U0X8   

Pfam

PF04003   Utp12        + More
PF00400   WD40
PF12894   ANAPC4_WD40

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR011047   Quinoprotein_ADH-like_supfam       
IPR017986   WD40_repeat_dom       
IPR027145   PWP2       
IPR001680   WD40_repeat       
IPR020472   G-protein_beta_WD-40_rep       
IPR019775   WD40_repeat_CS       
IPR007148   SSU_processome_Utp12       
IPR036322   WD40_repeat_dom_sf       
IPR011044   Quino_amine_DH_bsu       
IPR024977   Apc4_WD40_dom       
IPR011045   N2O_reductase_N       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF50969   SSF50969       
SSF50974   SSF50974       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9IUA9   A0A2A4K3K0   A0A3S2NZ91   A0A2H1VD55   S4NTU2   A0A194QKM6   + More
A0A212EW49   A0A1Y1LGC0   A0A067RUU4   A0A088A433   A0A2J7PFL4   A0A2J7PFN0   A0A2A3EKM1   A0A0N0U661   A0A212F2V2   B0WV63   A0A1Q3F3C8   A0A336M1P9   U4TRW0   K7J0V2   E2AKD5   A0A1B6FJT0   A0A0P6JRM8   A0A182G4N1   A0A336M8R8   E9J0X9   A0A158N9M1   F4WYE7   B4KUC1   B3MIL2   A0A1W4VR95   A0A151ID36   B3NN43   A0A026W272   A0A3L8D4D7   Q7QE23   B4J9E2   A0A182WXZ0   B4LPI6   A0A182KV06   A0A3B0J467   A0A182I610   A0A084WUD3   A0A182YAC3   A0A182WE74   Q28XK7   A0A182M980   A0A182QYW6   A0A1A9Z1X3   A0A182KFQ3   A0A0L0C9K1   A0A182IUE7   A0A1B0C2F9   B4NN80   B4HN10   A0A2S2Q4N4   A0A0J9R9W9   A0A1B0FLN1   B4P826   B4GGA0   A0A2M4BC31   A0A1A9V1M5   A0A182FZS4   A0A2M4BC09   A0A2M4BC16   A0A182NPB0   A0A1A9W3Q6   A0A1I8PA59   A0A182RLU3   A0A182P7K7   E0VBH8   A0A1A9XUT3   A0A2M4AER8   A0A2M4AEP4   A0A0A1WXH6   W5JTG6   A0A034VCB5   A0A2M4AEQ4   Q5U0X8   A0A2H8TFM9   A0A0M5J9N8   A0A2R7W118   A0A0K8V7W6   J9K4S6   A0A1I8MQB5   A0A154NWD3   A0A1B6IQA5   W8BBA1   B4QAN9   A0A1J1IUP2   A0A0J7KSU4   U4U704   A0A224Z4V5   A0A0L7R5T6   A0A131YJY9   A0A293N6E6   A0A1E1XF76   A0A023GG76   A0A2R5LIA6  

PDB

5WYK     E-value=9.33891e-179,     Score=1613

KEGG

101746947    K14558 periodic tryptophan protein 2 | (RefSeq) periodic tryptophan protein 2 homolog

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0000462   GO:0032040   GO:0000028   GO:0034388   GO:0005515   GO:0015991   GO:0033177   GO:0033179   GO:0015450   GO:0005737   GO:0005488   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR19858  

Length:

879

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.21695

Exp number, first 60 AAs:

0.00412

Total prob of N-in:

0.01029

outside

1  -  879

 

 

Pi

203.207563

Theta

3.558044

Tajima's D

-2.238372

CLR

214.617599

CSRT

0.00204989750512474

Interpretation

Possibly Positive selection