Gene

KWMTBOMO07597

Pre Gene Modal

BGIBMGA013704

Annotation

PREDICTED:_zinc_finger_matrin-type_protein_CG9776_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(+):1103512-1110606      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.746

CDS

ATGCGGCATCAAAAAGCAGCTCTATCAAAACAAAGAGAAGAATACATAAAGAAAGCTGGTACACTTAAAAAAGAACTTGATACGCTAAAGGACCAACGTAATGAGCTTCGTGGAGATTCTAAACGCTCTCCGAGCCCGGATACTAAGAGGTTCTTGAAAGAGAACACTAAGTTACAGTTGGAGATCCAGAACAAGTTGAAAACAATAAACAATGTGGTGGACATGCTGAATGGCATCATTGGCGAAGAAGCAAATGTGAACACTATTGAGATGAAAGAGTCACCTGAACGGACCTCCAAAAAAAAATCCAGGTCTCCGTCGGGTGCGAAGTTCAACTACGTGTACTACGACCCCGAGATGCACTGGTGCCGCGTGTGCAACGACTTCCCGCCCACCGCCAAGGACTACCTCAACCATCTGCACTCTCCCGCGCACCACAAGATGGCGTCGGCCCACATGGAGGCTCCGTGGCATGGCGTCTCCGCCCACGAGGGCTTCCCGCCCAACCCCGCCGCGCCCACCAAGCGGACACCTATCAAGGGCCTACAATTCTTCGTGCCCTCCACGGCCTGGTACTGCAAGCTGTGCGATCAGTTCATAGGCGACCTGCACTGCGCGTCTGCCCATCTCAAATCCATTGTGCACTCCAAGAACTATGCTAACTTTGTCGAACAAAATCCTCACTGGGAAACGGACTGGATGTCAGACCGACAGAAAGCCTTCGAGACGACCCGCGGCAAGCTGAAGGCGGAGCTGACCGACAAGTGCGTGTACACGGCGCAGACCATCACCTTCAGCAAGGACGGCTTCCACTCCAAGAGGAACAAGGACAGCCCCCCGCTCGACGAGAAGAAGAGGAGGAAAGAGAAGCGGAAGAAGTCCAAGAGGAAACGGAACAGCAGCACCAGCTCCTCCAGCAACTCCACGGACTCGTCCGACAGCGATTCCCAGAAGAAAAAGAAAAAGAAAAAGACAAAAGAAAGATCGAAAGTGAAGTCGAAGGGTGAGGAAGAGGACGGCGCGCCCAGCCCCCCGCACCCCCGCGCCGCGCCCCCCGCCCTCCCGCTGCACTACCGGTGA

Protein

MRHQKAALSKQREEYIKKAGTLKKELDTLKDQRNELRGDSKRSPSPDTKRFLKENTKLQLEIQNKLKTINNVVDMLNGIIGEEANVNTIEMKESPERTSKKKSRSPSGAKFNYVYYDPEMHWCRVCNDFPPTAKDYLNHLHSPAHHKMASAHMEAPWHGVSAHEGFPPNPAAPTKRTPIKGLQFFVPSTAWYCKLCDQFIGDLHCASAHLKSIVHSKNYANFVEQNPHWETDWMSDRQKAFETTRGKLKAELTDKCVYTAQTITFSKDGFHSKRNKDSPPLDEKKRRKEKRKKSKRKRNSSTSSSSNSTDSSDSDSQKKKKKKKTKERSKVKSKGEEEDGAPSPPHPRAAPPALPLHYR

Uniprot

H9JVZ1   A0A2A4J2W2   A0A2H1X2C1   A0A212FJS1   A0A194PCP8   A0A0L7KVM4   + More
A0A3S2N9G6   A0A0L7QVG7   A0A0M8ZY32   A0A310SNB5   A0A087ZWD9   A0A2A3EMV6   K7J342   E2A789   A0A026WBX5   A0A2J7PWB5   F4WIK5   A0A158NJY6   A0A2J7PWB0   E2BKM6   A0A2P8YJA8   A0A151I827   A0A195E1U6   A0A0J7KUE4   A0A151XE58   A0A195BIW5   A0A067R4Z7   A0A1S4G0U3   Q16HE1   A0A195F3Y4   A0A1B6CH79   N6UBE8   U4TXI1   A0A0A9WM00   A0A0A9WK14   A0A069DZR7   A0A224XI04   A0A1J1HPR4   A0A023EXK1   A0A0A9Y3G4   A0A0V0G4V3   A0A0P4VNZ6   A0A1B0GJW0   A0A2R7WKN8   A0A146LXW3   A0A0A9XN95   A0A0K8SPL5  

Pubmed

19121390    22118469    26354079    26227816    20075255    20798317    + More
24508170    30249741    21719571    21347285    29403074    24845553    17510324    23537049    25401762    26334808    25474469    26823975    27129103   

EMBL

BABH01036493    NWSH01003834    PCG65780.1    ODYU01012871    SOQ59388.1    AGBW02008223    + More
OWR53988.1    KQ459606    KPI91066.1    JTDY01005145    KOB67327.1    RSAL01000433    RVE41736.1    KQ414727    KOC62486.1    KQ435821    KOX72416.1    KQ759851    OAD62562.1    KZ288215    PBC32536.1    GL437314    EFN70699.1    KK107282    QOIP01000006    EZA53560.1    RLU21620.1    NEVH01020936    PNF20625.1    GL888176    EGI65941.1    ADTU01018476    PNF20622.1    GL448819    EFN83724.1    PYGN01000554    PSN44338.1    KQ978390    KYM94319.1    KQ979814    KYN19051.1    LBMM01003123    KMQ93938.1    KQ982254    KYQ58645.1    KQ976465    KYM84279.1    KK852969    KDR13112.1    CH478181    EAT33662.1    KQ981820    KYN35290.1    GEDC01024510    JAS12788.1    APGK01030192    KB740761    ENN79040.1    KB631708    ERL85507.1    GBHO01034805    GBHO01034801    GBHO01034800    JAG08799.1    JAG08803.1    JAG08804.1    GBHO01034807    JAG08797.1    GBGD01000170    JAC88719.1    GFTR01008663    JAW07763.1    CVRI01000015    CRK90048.1    GBBI01004790    JAC13922.1    GBHO01017971    GBRD01014657    GDHC01015242    JAG25633.1    JAG51169.1    JAQ03387.1    GECL01003043    JAP03081.1    GDKW01000085    JAI56510.1    AJWK01022422    KK854999    PTY20204.1    GDHC01007429    JAQ11200.1    GBHO01022150    JAG21454.1    GBRD01010780    GBRD01010779    JAG55044.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000037510    UP000283053    + More
UP000053825    UP000053105    UP000005203    UP000242457    UP000002358    UP000000311    UP000053097    UP000279307    UP000235965    UP000007755    UP000005205    UP000008237    UP000245037    UP000078542    UP000078492    UP000036403    UP000075809    UP000078540    UP000027135    UP000008820    UP000078541    UP000019118    UP000030742    UP000183832    UP000092461   

PRIDE

H9JVZ1   

Pfam

PF00023   Ank        + More
PF00176   SNF2_N
PF12796   Ank_2
PF00076   RRM_1
PF00271   Helicase_C

Interpro

IPR003604   Matrin/U1-like-C_Znf_C2H2        + More
IPR036236   Znf_C2H2_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000330   SNF2_N       
IPR000504   RRM_dom       
IPR002110   Ankyrin_rpt       
IPR038718   SNF2-like_sf       
IPR027417   P-loop_NTPase       
IPR035979   RBD_domain_sf       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR037386   CCDC40       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       

SUPFAM

SSF57667   SSF57667        + More
SSF54928   SSF54928       
SSF48403   SSF48403       
SSF52540   SSF52540       

Gene 3D

1.25.40.20     3.30.70.330     3.40.50.10810    

CDD

cd00079  HELICc
cd00204  ANK

ProteinModelPortal

H9JVZ1   A0A2A4J2W2   A0A2H1X2C1   A0A212FJS1   A0A194PCP8   A0A0L7KVM4   + More
A0A3S2N9G6   A0A0L7QVG7   A0A0M8ZY32   A0A310SNB5   A0A087ZWD9   A0A2A3EMV6   K7J342   E2A789   A0A026WBX5   A0A2J7PWB5   F4WIK5   A0A158NJY6   A0A2J7PWB0   E2BKM6   A0A2P8YJA8   A0A151I827   A0A195E1U6   A0A0J7KUE4   A0A151XE58   A0A195BIW5   A0A067R4Z7   A0A1S4G0U3   Q16HE1   A0A195F3Y4   A0A1B6CH79   N6UBE8   U4TXI1   A0A0A9WM00   A0A0A9WK14   A0A069DZR7   A0A224XI04   A0A1J1HPR4   A0A023EXK1   A0A0A9Y3G4   A0A0V0G4V3   A0A0P4VNZ6   A0A1B0GJW0   A0A2R7WKN8   A0A146LXW3   A0A0A9XN95   A0A0K8SPL5  

KEGG

101741627    no KO assigned | (RefSeq) zinc finger matrin-type protein CG9776

GO

GO:0003676   GO:0008270   GO:0003723   GO:0005524   GO:0035082  

PANTHER

PTHR16275  

Length:

359

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00072

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05106

outside

1  -  359

 

 

Pi

196.202998

Theta

181.609178

Tajima's D

0.370931

CLR

0.199101

CSRT

0.471476426178691

Interpretation

Uncertain