Gene

KWMTBOMO07592

Pre Gene Modal

BGIBMGA013703

Annotation

UTP11-like_U3_small_nucleolar_ribonucleoprotein_[Bombyx_mori]

Location

Bomo_Chr13(+):1025092-1027005      View in EpiBrowser

Full name

U3 small nucleolar RNA-associated protein 11      

Location in the cell

Nuclear   Reliability : 4.316

CDS

ATGTCGTCGTGGAAGAAGGCCGCTAAGGCGAATCAGAAAACTCACAGAGAACGACATCAACCAGAAGCTCGGAAACATCTTGGACTTCTCGAAAAGAAGAAGGATTATAAAAAGAGAGCAGATGATTACCATGAGAAAGGTCAAACCTTAAAACTTCTTCGGAAAAGGACACTTGATAAGAACCCAGATGAATTTTACTATCACATGATAAACTCTAGGGTGAAAGAAGGGGTACATCATGAGCTCCAGAAAGAGGGTGAGCACTCGTCGGAGCAGGTGAAGTTGATGCAGACTCAAGATATCAAATATATCAACATGAAACGCACCATTGAAAGTAGAAGAATCAATAGACTACAGTCCCAACTTCATATGACAGACGTAGCAGAGGCGACACCAAACACACACACATTCTTTGTTGATGAAGGTGAAGAGAATGGCTTTGATTTAGCGAAGAGACTTGACACACATCCTGCTCTGATTGGCAGAAAATCCAATAGGCCAAGATTGTCTGACTTAAACAAGATAACTCTACCAGACTTGGATGAAGAGACTGTAAAAGAAATGAAAAAGAAAAAGGAGAAAGTTTACAAAGAGATTGCGAAAAGAATTCAAAGAGAGACCGAGTTGACAGTTGTCCAACAAAAGATGGAGCTAAAACGTCACCTGCAGGACACTTCAGTACTAAAGCCAAAGAAAATAAAGAAGGGTTCGGCAAAAGCGGCTCCAGTTTACAAATTCCATTACATAAGGAAGAAATAA

Protein

MSSWKKAAKANQKTHRERHQPEARKHLGLLEKKKDYKKRADDYHEKGQTLKLLRKRTLDKNPDEFYYHMINSRVKEGVHHELQKEGEHSSEQVKLMQTQDIKYINMKRTIESRRINRLQSQLHMTDVAEATPNTHTFFVDEGEENGFDLAKRLDTHPALIGRKSNRPRLSDLNKITLPDLDEETVKEMKKKKEKVYKEIAKRIQRETELTVVQQKMELKRHLQDTSVLKPKKIKKGSAKAAPVYKFHYIRKK

Description

Involved in nucleolar processing of pre-18S ribosomal RNA.

Subunit

Component of the ribosomal small subunit (SSU) processome.

Similarity

Belongs to the UTP11 family.

Uniprot

Q1HPT7   A0A2H1WJF8   A0A1E1VZ43   A0A3S2TC82   A0A2A4JS36   A0A194RI46   + More
A0A194PEE9   S4P852   A0A212F720   A0A154P8E9   Q16VF9   A0A195F3D7   A0A1A9VRF1   A0A182S705   A0A182HE04   D3TQW5   A0A151IXT0   A0A2M4BXD9   A0A0L7R232   A0A2P8XXK5   A0A182W325   A0A195BDE7   A0A158NZR6   W5JH54   A0A182IJ22   A0A182YJN2   A0A2M3ZJF1   A0A182MMJ8   A0A151WY04   A0A2M4AXL7   A0A182KEH7   A0A084VFV0   A0A336LL99   A0A1A9WX10   A0A182P3G7   F4WLB6   A0A023EL89   A0A182F772   E2BPM4   A0A088AE86   A0A0L7KN25   A0A1A9XDV8   A0A182R8F6   A0A1B0B8H6   A0A0C9RBL6   A0A1J1HFN6   A0A1I8M9S7   A0A0M9A129   E2A6K8   A0A182UTI9   A0A182LNH4   A0A182HVH7   A0A182XF10   A0A0K8VRH6   A0A232F9F0   A0A026W318   K7IP59   Q7PQ85   A0A034VRH1   A0A067RCZ4   A0A182TT63   A0A1B0G0S1   W8B522   E0VN76   A0A2J7PEY7   A0A1I8PCR2   A0A182QRQ8   A0A182NCN7   A0A0A1XI80   A0A0J7N5N7   A0A1Q3F1Z5   B0W3D5   C4WYC0   A0A2A3ETA8   A0A195D1Q6   A0A0L0CQH3   A0A1B6LFV5   A3EXT0   A0A1B6EZH7   A0A0P6H4Q3   A0A1Z5KUS8   A0A1B6I2Q6   A0A0P5HKF2   A0A0P5XC94   A0A0P6B709   E9H9I9   A0A2R5LIA9   A0A0P6JPZ3   A0A0P5ZJB1   A0A293LJ02   A0A131YBB6   A0A0K8RL62   A0A0P5IS99   B7Q8Y0   A0A1B6DD35   L7M7F2   A0A1S3I255   A0A224Z2Q1   A0A0C9R1S0  

Pubmed

19121390    26354079    23622113    22118469    17510324    26483478    + More
20353571    29403074    21347285    20920257    23761445    25244985    24438588    21719571    24945155    20798317    26227816    25315136    20966253    28648823    24508170    30249741    20075255    12364791    14747013    17210077    25348373    24845553    24495485    20566863    25830018    26108605    28528879    21292972    25576852    28797301    26131772   

EMBL

BABH01036501    BABH01036502    DQ443315    ABF51404.1    ODYU01009064    SOQ53213.1    + More
GDQN01011054    JAT80000.1    RSAL01000433    RVE41738.1    NWSH01000725    PCG74576.1    KQ460205    KPJ17109.1    KQ459606    KPI91064.1    GAIX01006096    JAA86464.1    AGBW02009952    OWR49509.1    KQ434827    KZC07488.1    CH477594    EAT38544.1    KQ981856    KYN34692.1    JXUM01034813    KQ561037    KXJ79935.1    EZ423817    ADD20093.1    KQ980791    KYN13123.1    GGFJ01008578    MBW57719.1    KQ414666    KOC64899.1    PYGN01001197    PSN36738.1    KQ976511    KYM82583.1    ADTU01004931    ADMH02001534    ETN62144.1    GGFM01007881    MBW28632.1    AXCM01000316    KQ982656    KYQ52743.1    GGFK01012131    MBW45452.1    ATLV01012488    KE524796    KFB36844.1    UFQT01000042    SSX18736.1    GL888207    EGI65079.1    GAPW01003622    JAC09976.1    GL449633    EFN82428.1    JTDY01008612    KOB64486.1    JXJN01009945    GBYB01013919    JAG83686.1    CVRI01000002    CRK86783.1    KQ435794    KOX73649.1    GL437134    EFN70923.1    APCN01005778    GDHF01011144    JAI41170.1    NNAY01000633    OXU27295.1    KK107488    QOIP01000012    EZA49981.1    RLU15651.1    AAAB01008898    EAA09174.5    GAKP01013047    GAKP01013046    JAC45906.1    KK852547    KDR21607.1    CCAG010004515    GAMC01021666    JAB84889.1    DS235335    EEB14832.1    NEVH01026086    PNF14900.1    AXCN02001182    GBXI01003625    JAD10667.1    LBMM01009588    KMQ88010.1    GFDL01013469    JAV21576.1    DS231831    EDS31278.1    ABLF02009719    AK343117    BAH72890.1    KZ288192    PBC34379.1    KQ976956    KYN06838.1    JRES01000062    KNC34496.1    GEBQ01017418    JAT22559.1    EF091998    ABN11990.1    GECZ01026548    JAS43221.1    GDIQ01025266    JAN69471.1    GFJQ02008326    JAV98643.1    GECU01026561    JAS81145.1    GDIQ01231814    JAK19911.1    GDIP01074220    JAM29495.1    GDIP01021078    JAM82637.1    GL732608    EFX71625.1    GGLE01004931    MBY09057.1    GDIQ01012656    JAN82081.1    GDIP01042819    JAM60896.1    GFWV01003306    MAA28036.1    GEFM01000420    JAP75376.1    GADI01002185    JAA71623.1    GDIQ01209775    JAK41950.1    ABJB010094388    ABJB010486046    DS886620    EEC15302.1    GEDC01013694    JAS23604.1    GACK01005981    JAA59053.1    GFPF01012990    MAA24136.1    GBZX01001765    JAG90975.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000076502    UP000008820    UP000078541    UP000078200    UP000075901    UP000069940    UP000249989    UP000078492    UP000053825    UP000245037    UP000075920    UP000078540    UP000005205    UP000000673    UP000075880    UP000076408    UP000075883    UP000075809    UP000075881    UP000030765    UP000091820    UP000075885    UP000007755    UP000069272    UP000008237    UP000005203    UP000037510    UP000092443    UP000075900    UP000092460    UP000183832    UP000095301    UP000053105    UP000000311    UP000075903    UP000075882    UP000075840    UP000076407    UP000215335    UP000053097    UP000279307    UP000002358    UP000007062    UP000027135    UP000075902    UP000092444    UP000009046    UP000235965    UP000095300    UP000075886    UP000075884    UP000036403    UP000002320    UP000007819    UP000242457    UP000078542    UP000037069    UP000000305    UP000001555    UP000085678   

PRIDE

Q1HPT7   

Pfam

PF03998   Utp11

Interpro

IPR007144   SSU_processome_Utp11       

ProteinModelPortal

Q1HPT7   A0A2H1WJF8   A0A1E1VZ43   A0A3S2TC82   A0A2A4JS36   A0A194RI46   + More
A0A194PEE9   S4P852   A0A212F720   A0A154P8E9   Q16VF9   A0A195F3D7   A0A1A9VRF1   A0A182S705   A0A182HE04   D3TQW5   A0A151IXT0   A0A2M4BXD9   A0A0L7R232   A0A2P8XXK5   A0A182W325   A0A195BDE7   A0A158NZR6   W5JH54   A0A182IJ22   A0A182YJN2   A0A2M3ZJF1   A0A182MMJ8   A0A151WY04   A0A2M4AXL7   A0A182KEH7   A0A084VFV0   A0A336LL99   A0A1A9WX10   A0A182P3G7   F4WLB6   A0A023EL89   A0A182F772   E2BPM4   A0A088AE86   A0A0L7KN25   A0A1A9XDV8   A0A182R8F6   A0A1B0B8H6   A0A0C9RBL6   A0A1J1HFN6   A0A1I8M9S7   A0A0M9A129   E2A6K8   A0A182UTI9   A0A182LNH4   A0A182HVH7   A0A182XF10   A0A0K8VRH6   A0A232F9F0   A0A026W318   K7IP59   Q7PQ85   A0A034VRH1   A0A067RCZ4   A0A182TT63   A0A1B0G0S1   W8B522   E0VN76   A0A2J7PEY7   A0A1I8PCR2   A0A182QRQ8   A0A182NCN7   A0A0A1XI80   A0A0J7N5N7   A0A1Q3F1Z5   B0W3D5   C4WYC0   A0A2A3ETA8   A0A195D1Q6   A0A0L0CQH3   A0A1B6LFV5   A3EXT0   A0A1B6EZH7   A0A0P6H4Q3   A0A1Z5KUS8   A0A1B6I2Q6   A0A0P5HKF2   A0A0P5XC94   A0A0P6B709   E9H9I9   A0A2R5LIA9   A0A0P6JPZ3   A0A0P5ZJB1   A0A293LJ02   A0A131YBB6   A0A0K8RL62   A0A0P5IS99   B7Q8Y0   A0A1B6DD35   L7M7F2   A0A1S3I255   A0A224Z2Q1   A0A0C9R1S0  

PDB

5WLC     E-value=2.74718e-08,     Score=137

KEGG

732986    K14769 U3 small nucleolar RNA-associated protein 11 | (RefSeq) UTP11-like U3 small nucleolar ribonuc

GO

GO:0005730   GO:0006364   GO:0032040   GO:0030117   GO:0005198   GO:0030126   GO:0005737   GO:0005488   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR12838  

Subcellular location

  

Length:

252

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.36593

outside

1  -  252

 

 

Pi

300.830522

Theta

192.899187

Tajima's D

1.330484

CLR

0.569814

CSRT

0.746362681865907

Interpretation

Uncertain