SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07590
Pre Gene Modal
BGIBMGA013701
Annotation
PREDICTED:_E3_ubiquitin-protein_ligase_TM129-like_[Amyelois_transitella]
Full name
E3 ubiquitin-protein ligase TM129      
Alternative Name
RING-type E3 ubiquitin transferase TM129
Location in the cell
PlasmaMembrane   Reliability : 4.293
 

Sequence

CDS
ATGGATGTTTTAGTTACACTTTTCTACGTTCTATTCTCTATATGCGTTGTTTATCCGCCTACCGAGTTCGTGTCTGCAGGATTCACAATTGCTCAGCTATTTGATAACTACTTGGGCTCTGAAAATACCAACTTTATTGGTTATCACATGAAGAGAATAACCATAACTGCGTTTATACATTCCGCTCTACCTCTTGGGTACGTTTGCACACTATGGTGTTGCGGGGAACGTAGTCAATGGATGCTTGCAAGTTTTGCTGCGACGGCCTTCATACCGCTGTTAATGTGCTACAAATTGCTGTGCTGGTGGGAGTATGAGAAGCTTGGTCATCCGATCGTAAAGGCACTCCTGCCGTACGTGTCGACGGGAAGTGACTGGCGGGTCACTGCGGCTTATCTCAATTCAGAATTTAGAGGTGTTGATAAAGTCTCAATACAGCTGACGGCTACAAGCAAGTTTGTGGCTACGGAGACTTGGCTCATCAAGGTGTCACAGTATTCCGTTAACATAGTGAAACAGGAAGATTGCTCTCTTGTTGCCACTGCTAGTGACAGCCACAATTTGTCACCATCGGGTGAAGACGTAATCCAATATCTGAACATAGAGGTGATACCCAACCGAGATGAGATCCAGCGATTTACATTTCGCATCACAACAGTAATGTTGCGTGACTTGCAGCCGAGGCTATTGAATGCAGTGAGGGTTCCTGAACACATTTCATTGATGCCAACTTTAGTGGAACGATTCGTGAATGTCTTCAAACAGTATGTTGATCAGAACCCTGTTTATATTATTGATGAGGAGCCAGAGATGTGCATTGGGTGCATGCAAGCCCCGGCTGATGTTAAGATAAATCGACGTTGCTTGCCGCCTCCACCACATCTCGAGGGAGGACCACAGCAGTGCCAGCAGTGTCACTGCAGGTCAGGAAGCAGATATGTCGAATGTGTCGAATTGGCCACGACGAGCTAG
Protein
MDVLVTLFYVLFSICVVYPPTEFVSAGFTIAQLFDNYLGSENTNFIGYHMKRITITAFIHSALPLGYVCTLWCCGERSQWMLASFAATAFIPLLMCYKLLCWWEYEKLGHPIVKALLPYVSTGSDWRVTAAYLNSEFRGVDKVSIQLTATSKFVATETWLIKVSQYSVNIVKQEDCSLVATASDSHNLSPSGEDVIQYLNIEVIPNRDEIQRFTFRITTVMLRDLQPRLLNAVRVPEHISLMPTLVERFVNVFKQYVDQNPVYIIDEEPEMCIGCMQAPADVKINRRCLPPPPHLEGGPQQCQQCHCRSGSRYVECVELATTS

Summary

Description
E3 ubiquitin-protein ligase involved in ER-associated protein degradation, preferentially associates with the E2 enzyme UBE2J2.
Catalytic Activity
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.
Subunit
Integral component of ER-resident dislocation complexes.
Similarity
Belongs to the TMEM129 family.
Keywords
Complete proteome   Endoplasmic reticulum   Membrane   Metal-binding   Reference proteome   Transferase   Transmembrane   Transmembrane helix   Ubl conjugation pathway   Unfolded protein response   Zinc   Zinc-finger  
Feature
chain  E3 ubiquitin-protein ligase TM129
EC Number
2.3.2.27
EMBL
BABH01036510    NWSH01000725    PCG74578.1    ODYU01013047    SOQ59693.1    AGBW02011879    + More
OWR45985.1    KQ459606    KPI91062.1    KQ460205    KPJ17107.1    KK852714    KDR17894.1    KQ976529    KYM81750.1    ADTU01020819    NNAY01000011    OXU32031.1    KQ981940    KYN32719.1    KQ979147    KYN22432.1    KQ983115    KYQ47282.1    KQ978231    KYM96136.1    GL888334    EGI62561.1    GL437987    EFN69753.1    KQ971371    KYB25563.1    KQ760287    OAD60880.1    GEZM01048962    JAV76241.1    QOIP01000007    RLU20553.1    KQ435897    KOX69201.1    PYGN01000142    PSN53019.1    GAPW01001878    JAC11720.1    GALX01003570    JAB64896.1    JXUM01068660    KQ562512    KXJ75741.1    KQ414657    KOC65780.1    KZ288357    PBC27152.1    CH477282    EAT44886.1    KQ416074    KOF98810.1    GBGD01001873    JAC87016.1    RQTK01000444    RUS79554.1    KK855191    PTY21364.1    GFTR01005540    JAW10886.1    GFDL01008093    JAV26952.1    KK107347    EZA52281.1    FO904857    FP103003    GECL01002468    JAP03656.1    GBBI01001151    JAC17561.1    RCHS01003041    RMX44259.1    BT059471    ACN11184.1    GL732605    EFX71879.1    BC058876    FR905989    CDQ82497.1    GDIP01035069    JAM68646.1    GEBQ01019150    JAT20827.1    GDIP01225599    JAI97802.1    GDIP01047765    LRGB01000084    JAM55950.1    KZS21072.1    GDIQ01212746    JAK38979.1    GDIQ01190425    JAK61300.1    DS469510    EDO49123.1    GDIQ01075963    JAN18774.1    GDIQ01114094    JAL37632.1    AANG04001605    DS232745    EDS45336.1    LZPO01066269    OBS70826.1    GDKW01001891    JAI54704.1    ACPB03002190    GAHY01001649    JAA75861.1    HACG01026458    CEK73323.1    UFQT01001042    SSX28607.1    BC121210    HADW01015978    HADX01009972    SBP32204.1    KB031030    ELK06590.1    AFYH01076629    AFYH01076630    AFYH01076631    AHAT01001586    AGTP01011815    KB201194    ESO98998.1    CM004466    OCT99238.1    GABZ01006689    JAA46836.1    GL447768    EFN85991.1    AEYP01079003    KB320803    ELW62749.1    JH816697    EKC25087.1    AAQR03169491    BC071045    CYRY02000461    VCW49982.1    JP019715    AES08313.1    HAEH01020137    HAEI01012143    SBS14611.1    HAEF01012893    HAEG01000261    SBR54052.1   
Pfam
PF10272   Tmpp129
Interpro
IPR018801   TM129       

Ontologies

Topology

Subcellular location
Endoplasmic reticulum membrane  
SignalP
Position:   1 - 26,         Likelihood:  0.768802
 
 
Length:
323
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
66.6856100000002
Exp number, first 60 AAs:
30.54005
Total prob of N-in:
0.98045
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  52
TMhelix
53  -  75
inside
76  -  81
TMhelix
82  -  104
outside
105  -  323
 
 

Population Genetic Test Statistics

Pi
195.309573
Theta
172.605867
Tajima's D
0.729759
CLR
0.408219
CSRT
0.576471176441178
Interpretation
Uncertain
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