Gene

KWMTBOMO07588  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013700

Annotation

PREDICTED:_troponin_T_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(+):961852-967529      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.921

CDS

ATGGCGCGGGCGCAGGTCGGCGCGCGGGGTGAGGGAGATCCAGAATTCATCAAGCGTCAAGACCAGAAGCGGTCGGACTTGGATGAACAGTTGAAGGAATACATCAACGAATGGCGCAAACAGCGGGCCAAGGAGGAGGATGAGCTCAAACGCCTTAAAGAGAAGCAGGCCAAGCGCAAGGTTTCTCGTGCCGAAGAAGAAAAGCGCCTCGCTCAAAAGAAAAAGGAAGAAGAAGAAAGGAGAGTGCGCGAAATCGAAGAGAAGAAACAACGCGACATCGAAGAGAAGAGGCAACGGCTCGAGGAGGCTGAGAAGAAGCGCCAGGCTATGCTCCAGGCCATGAAAGATGCCAGCAAGACCGGACCCAACTTCACCATCCAAAAGAAGAGCGAAAACTTCGGTTTGAGCAATGCCCAGCTGGAGCGCAACAAGACCAAGGAGCAGCTGGAAGAGGAGAAGAAGATCTCCCTGTCCATCCGCATCAAGCCGCTGACCATCGAGGGTCTCTCCGTCGACAAACTCCGACAGAAGGCCCAGGAACTCTGGGAGTGCATCGTCAAACTCGAGACCGAGAAATACGATCTCGAAGAGAGGCAAAAGAGACAGGACTACGACTTAAAAGAGCTCAAAGAAAGACAAAAGCAGCAACTGAGGCACAAAGCTCTCAAGAAGGGTCTCGACCCCGAAGCGCTCACAGGCAAGCACCCGCCCAAAATTCAAGTAGCGTCCAAGTACGAGAGGCGTGTCGACACACGATCCTACGACGACAAAAAGAAACTGTTCGAGGGTGACCTAGAGAAACTGAACAAGGACTTCCTCGAGAAGGTGTGGCAAGAGAGGGCCGAACAGTTCGGCGGCAGGCAAAAGGCGCGACTGCCGAAGTGGTTCGGCGAGAGGCCCGGCAAGAAGAAGGGCGAACTCGAATCTCCGGAAGGCGAAGAGGACGTCAAGGCTGAGCCCGAGGAGGACGAAGAACCTCAATACGAGCCTGAACCCGAAGAGGAGGAGGAAGAGGTCGTTGAGGAGGTAGAAGAAGAGGAGGAAGAGGAGGAAGAAGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAGGAATAA

Protein

MARAQVGARGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLKEKQAKRKVSRAEEEKRLAQKKKEEEERRVREIEEKKQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPGKKKGELESPEGEEDVKAEPEEDEEPQYEPEPEEEEEEVVEEVEEEEEEEEEEEEEEEEEEEEE

Uniprot

H9JVY7   C0LZ14   Q2F5V0   C0LZ13   A0A212EX11   A0A2A4JT65   + More
A0A2A4JS46   A0A2A4JRD0   A0A2A4JT68   Q5MGI3   B2DBH9   E3UKQ8   I4DLX7   A0A1E1VXG9   A0A3S2N8E8   A0A1E1WM87   L0BWW4   L0BWW1   L0BXF6   L0BVK2   L0BVR0   L0BXG7   L0BVJ6   L0BVJ1   L0BXG3   L0BVQ6   L0BWV7   L0BXF2   A0A194RI42   A0A2M4CJ64   A0A182J3N1   A0A2M4CVE6   A7USW2   Q3B722   A0A182QYZ0   Q3B723   A0A182RCW0   T1E7U1   Q3B719   Q7PGE9   A0A182U8M5   Q3B721   A0A182FR73   Q17I96   A0A023ETB4   Q17I94   Q17I95   A0A1Q3FYY5   A0A023ERF7   A0A182GIW8   U5EVI4   A0A1I8MYM9   A0A1I8MYM6   A0A336LQ17   A0A1I8MYM2   A0A1I8MYP0   B0WS57   A0A1I8MYN5   A0A1I8QB09   A0A1I8QB44   A0A034VQR8   A0A182N4M7   A0A336MLX4   A0A1I8MYM5   A0A1I8QB00   A0A1I8QB23   A0A1I8MYN4   A0A0P8Y0X5   W8BT93   A0A034VVU1   A0A1L8EAU2   A0A0Q9WCU6   A0A034VU76   T1D464   A0A194PDH3   A0A1I8MYM1   A0A1I8MYM7   A0A1I8MYM8   W8AUA3   A0A1I8MYN2   A0A0P8Y0W7   A0A0Q9WN06   A0A1I8QB04   A0A034VT59   A0A0Q9WP92   A0A0Q9WMW9   A0A0Q9X2B8   A0A0Q9WRP3   A0A0Q9WSG9   A0A3B0JWW6   A0A0Q9WZZ2   D6W953   A0A3B0K1J9   A0A182VQ91   A0A1W4WDQ9   A0A0R3NZZ3   A0A336LQT0   A0A0R3NZP9   A0A0R3P4R4   A0A1I8QB17  

Pubmed

19121390    22118469    16023793    18712529    22651552    19011203    + More
26354079    12364791    14747013    17210077    16049195    17510324    24945155    26483478    25315136    25348373    17994087    24495485    24330624    18362917    19820115    15632085   

EMBL

BABH01036511    FJ785827    ACN86367.1    DQ311323    ABD36267.1    FJ785826    + More
ACN86366.1    AGBW02011879    OWR45987.1    NWSH01000725    PCG74582.1    PCG74586.1    PCG74587.1    PCG74590.1    AY829803    AAV91417.1    AB264659    BAG30738.1    HM449932    ADO33067.1    AK402295    BAM18917.1    GDQN01011665    JAT79389.1    RSAL01000208    RVE44275.1    GDQN01002940    JAT88114.1    KC166247    AFZ93887.1    KC166242    AFZ93882.1    KC166245    AFZ93885.1    KC166246    AFZ93886.1    KC166244    AFZ93884.1    KC166243    AFZ93883.1    JX989826    AFZ93881.1    JX989821    AFZ93876.1    JX989823    AFZ93878.1    JX989824    AFZ93879.1    JX989822    AFZ93877.1    JX989825    AFZ93880.1    KQ460205    KPJ17104.1    GGFL01001117    MBW65295.1    GGFL01005057    MBW69235.1    AAAB01008859    EDO64244.2    BK005279    DAA05507.1    AXCN02000051    DAA05506.1    GAMD01002752    JAA98838.1    DAA05509.1    EAA44956.5    DAA05508.1    CH477241    EAT46402.1    GAPW01001979    JAC11619.1    EAT46403.1    EAT46401.1    GFDL01002289    JAV32756.1    GAPW01001828    JAC11770.1    JXUM01012632    KQ560358    KXJ82847.1    GANO01001865    JAB58006.1    UFQS01001536    UFQT01000110    UFQT01001536    SSX11391.1    SSX20166.1    DS232064    EDS33676.1    GAKP01013316    JAC45636.1    SSX11392.1    SSX30960.1    CH902625    KPU75438.1    GAMC01014131    JAB92424.1    GAKP01013314    JAC45638.1    GFDG01003050    JAV15749.1    CH940651    KRF82473.1    GAKP01013315    JAC45637.1    GALA01001083    JAA93769.1    KQ459606    KPI91058.1    GAMC01014130    JAB92425.1    KPU75429.1    CH933810    KRF94079.1    GAKP01013318    JAC45634.1    KRF94075.1    KRF94078.1    CH963925    KRF98907.1    KRF98911.1    KRF98905.1    OUUW01000011    SPP86544.1    KRF94074.1    KQ971312    EEZ98444.2    SPP86542.1    CH379064    KRT06538.1    SSX11390.1    SSX20165.1    KRT06535.1    KRT06541.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000283053    UP000053240    UP000075880    + More
UP000007062    UP000075886    UP000075900    UP000075902    UP000069272    UP000008820    UP000069940    UP000249989    UP000095301    UP000002320    UP000095300    UP000075884    UP000007801    UP000008792    UP000053268    UP000009192    UP000007798    UP000268350    UP000007266    UP000075920    UP000192221    UP000001819   

PRIDE

H9JVY7    Q2F5V0   

Pfam

PF00992   Troponin

Interpro

IPR001978   Troponin        + More
IPR038077   Troponin_sf       
IPR027707   TNNT       

Gene 3D

1.20.5.350    

ProteinModelPortal

H9JVY7   C0LZ14   Q2F5V0   C0LZ13   A0A212EX11   A0A2A4JT65   + More
A0A2A4JS46   A0A2A4JRD0   A0A2A4JT68   Q5MGI3   B2DBH9   E3UKQ8   I4DLX7   A0A1E1VXG9   A0A3S2N8E8   A0A1E1WM87   L0BWW4   L0BWW1   L0BXF6   L0BVK2   L0BVR0   L0BXG7   L0BVJ6   L0BVJ1   L0BXG3   L0BVQ6   L0BWV7   L0BXF2   A0A194RI42   A0A2M4CJ64   A0A182J3N1   A0A2M4CVE6   A7USW2   Q3B722   A0A182QYZ0   Q3B723   A0A182RCW0   T1E7U1   Q3B719   Q7PGE9   A0A182U8M5   Q3B721   A0A182FR73   Q17I96   A0A023ETB4   Q17I94   Q17I95   A0A1Q3FYY5   A0A023ERF7   A0A182GIW8   U5EVI4   A0A1I8MYM9   A0A1I8MYM6   A0A336LQ17   A0A1I8MYM2   A0A1I8MYP0   B0WS57   A0A1I8MYN5   A0A1I8QB09   A0A1I8QB44   A0A034VQR8   A0A182N4M7   A0A336MLX4   A0A1I8MYM5   A0A1I8QB00   A0A1I8QB23   A0A1I8MYN4   A0A0P8Y0X5   W8BT93   A0A034VVU1   A0A1L8EAU2   A0A0Q9WCU6   A0A034VU76   T1D464   A0A194PDH3   A0A1I8MYM1   A0A1I8MYM7   A0A1I8MYM8   W8AUA3   A0A1I8MYN2   A0A0P8Y0W7   A0A0Q9WN06   A0A1I8QB04   A0A034VT59   A0A0Q9WP92   A0A0Q9WMW9   A0A0Q9X2B8   A0A0Q9WRP3   A0A0Q9WSG9   A0A3B0JWW6   A0A0Q9WZZ2   D6W953   A0A3B0K1J9   A0A182VQ91   A0A1W4WDQ9   A0A0R3NZZ3   A0A336LQT0   A0A0R3NZP9   A0A0R3P4R4   A0A1I8QB17  

PDB

1YV0     E-value=4.46166e-05,     Score=111

KEGG

692913    K12046 troponin T, fast skeletal muscle | (RefSeq) troponin T

GO

GO:0005861   GO:0006937   GO:0003009   GO:0006936   GO:0060048   GO:0045214   GO:0005509   GO:0005524   GO:0016020   GO:0015074   GO:0005215   GO:0008270   GO:0022891   GO:0003707   GO:0051537  

PANTHER

PTHR11521  

Length:

364

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02615

outside

1  -  364

 

 

Pi

286.724219

Theta

218.304339

Tajima's D

1.180805

CLR

0.318871

CSRT

0.708414579271036

Interpretation

Uncertain