Silkworm Genome Informatics Database

Gene

KWMTBOMO07587 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013718

Annotation

PREDICTED:_helicase_POLQ-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr13(-):936993-954081 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.444

CDS

ATGAATTCAAAAGATAAAAGAAACATAGAACATACTTCAACACCTAAACGTCGTCGTCTTTCACTCAGACGAAAATGTTCAAATTTAAAAACATACATTTACAATGCACCTCATGAAGATTCTATACCTGAAATAGCTGATGAAGAAACTAATACGATACACCGATGTGAGTCACCGCGTCTACCGTGTAACCAAGTTGAATATTTGAGTGAATCTGGGAACAGTAGCGATATTCCATGTTCCCCGGGAGTTTCGAATAACTATACCTTAAACAACATCAGTAACTGGGAATCACTAGTATCCAGTGCAAATAACAAGAGTTCTAGTCATATAATTAAGCAAGAAATTGAAAACATATCTGATGAGATGTTCTGTTCGCTGATCGAAAAATCTGTTTCTAATCAAGAAGAAGTTGTTATGAAAAATGATGATAATAATGTTAATAGTCAAGCCAATCACAATCAAATCTTCAAGCTTAACTGTGGTTCCAAAGATGAATTAGAAACTAGAAATGAACTTATGCCAATTTCTCCAATAATAAATAGTAAATCATTTACTTTTAATAAAGGAACTAATCAAAATGAAAATATCAATGCCAGCACTATTAATTATGAAGTTGATATTGAAAATTATTTTGATGAGATCAACCATACCATAAGTAACTTCGATACAGTAAAATTGAATAAATCATCCCTTTTTGAAACAAAAGATTCATTTTTACTTGACATTAAAGATGACAGTATTCTAGGTCAAGAATTCAAATCGGATATTCATGATCTAGTTGAAAGAAAATTAGAAACAAAATTGAATGACAAGCAAGCAGTAATGAGTAATTTGAAAAGTTCAAATAGTTTTTATGGACTCCCGATCTCTGCTAAAGAGCTATTTAAAACTTTTAGGAATATAGAGAGGTTTTATGATTGGCAAGAGGAATGTCTGAATCTAGATGCAATAAAACATAGAAGAAATTTGATATATGCTCTACCAACTAGTGGTGGGAAGACCTTGGTGTCTGAGGTTTTAATGATGAGAGAAGTCATCAACAGGAAGAAGAATGCTTTGTTCATATTACCCTATGTTGCTATTGTTCAGGAAAAAATCTGGGCTCTGTCACCATTTGCAGTGCAGCTAGATTTCCTAATAGAAGAATATGCTGGTGGAAAAGGCAGTCTACCGCCAAAGAAACGACGCAAAAAGAACACTATTTACATTGCGACCATCGAGAAGGGTTTGGCACTTGTTAGAAGTCTCATAGAGCTGCGAAGACTGGACGAACTTGGACTTATTGTGGTAGACGAACTTCATCTTATTGGAGAGAAAGGACGCGGCGGTACTCTAGAGACGTTGTTGACCACTGTCATATTCGTTAACCAGAATATACAAATAGTCGGCATGAGCGCGACGATAGGGAACTTAAGCGAAGTGGCAACGTTCCTGAAGGCGGAAGTGTACGAACGTCACTTCCGGCCGGTGGAGCTGACTGAGTACGTGAAGCTCGGGAGCACGCTGCACAGGATGCTGTGGACAGACGAGGGCTTGGAGCTTGTACCTGATAGAGAGTTGGATTTTAATTACTCGGCGGAGCAGCGCGCGCGCGACCCGGACGGCGTGTGCGGGCTGCTGCGCGGGGGGCGGGCCGCGCTCGTGTTCTGTCCCACGCAGAGGAGCTGCGAGAACGTCGCCGCCACTGTAGCCGCCATGTTGCCGCCAGAGATGGCAGACGGTCGCGCCGAGGAACGCTTAGCTCTGGTTGAAGCTCTGAGGGCCGAGGGCTCCACCGACGCCCTGCTGCAGGCGGCGTCCTGCGGCGTGGCCTACCACCACGCGGGGCTTGCGACCGACGAGCGACACTTGTTGGAACAGGCCTTCAGGTCGGGGGTGCTGTCCACCATATGCTGCACGTCGACCCTGGCGGCCGGCGTGAACCTGCCGGCGGCGCGCGTGCTGCTGCGGGGCGCGGCGGGCGCGCGGGGGGGGCCGCCCGCGCTCTCCGCCGCCGCCTACCGACAGATGGCGGGCCGGGCGGGCAGGGCGGGGCTCGCCGCCGCCGGCGAAAGCATACTAATATGCAGCCCCCAGCAGTGGGAGCATTTGAAGCCAGTACTGGAAGCGGGAGTGGCCCCGGTGACCAGCGTCCTGCGACCCTCGCTAGAGAGCTTAATACTGAGCGCCGTGACTCTACAGTTAGCGGACACTGGCCCCGAGCTGAAGAGACTGCTGGACTCCACGTTCATGGCTGTCCCGAAAGCTGCTGAAAGCGCGGCCGCCGACACGAGGGCGGCGTGCCAGGAGGTGCTGCGGTCCCTCACGCGTGCCGGAGTCCTGGACGTTAAGGGCCAAAGGAAACTAAACCAGGACAATGATGATGAGGAGCTATACAACTCTCAGTTCGTCGTCAGCAGACTCGGTCAAGCCGCTGTCAAAGGATGCCTGTCGGTGGAGGCGGCGCGGCGGCTGGTGGCGGAGCTGCGTCGTGCGGCGCGCGGGCTGGTGCTGTGCGGGCCGCTGCACCTGCTGTACCTGGCGGCGCCGCACGACGACCCCGTGCGGCCCGACCCGAGACACTTTTACTCGCTGTACTGCGAACTAGACGAAGAGGGCCTGCAGACAGCTAAGGCGCTGGGCATCAACGAGACGAACGCGATCCGCATGATGACCGGGAGACCCATGGCTTCCGTGCCGTCGCTGGTCGTGAGCCGGTTCTACATGGCGCTGATGCTGCGCGATCTCTGGCGACACATGCCGCTGCACGCCGTGGCCGACAATGCTCAGGCCGTGTACTCGGTGCAGATACCTGGTGGGGCGGGGCCGCGTGCAGTGGCTGCTGACGGCGGGGTGCGCGGGGGCGGGGGGCGCGGCGGCGGCGTGCGAGGCGCTGGGGGCGGCGCCCTTCGCCGCGCTGCTGCAGCCGCTGGCGCTGGCGCTCAGGACGTGCGCTCATCCGCAACTACACCTGCTCATGGAACTGCCAGCCGTGAAAAAAGCCCGTGCGCTGCAGCTGATGCGTGCGGGATACAAGAGAATAGAAGACGTCGCTAA

Protein

MNSKDKRNIEHTSTPKRRRLSLRRKCSNLKTYIYNAPHEDSIPEIADEETNTIHRCESPRLPCNQVEYLSESGNSSDIPCSPGVSNNYTLNNISNWESLVSSANNKSSSHIIKQEIENISDEMFCSLIEKSVSNQEEVVMKNDDNNVNSQANHNQIFKLNCGSKDELETRNELMPISPIINSKSFTFNKGTNQNENINASTINYEVDIENYFDEINHTISNFDTVKLNKSSLFETKDSFLLDIKDDSILGQEFKSDIHDLVERKLETKLNDKQAVMSNLKSSNSFYGLPISAKELFKTFRNIERFYDWQEECLNLDAIKHRRNLIYALPTSGGKTLVSEVLMMREVINRKKNALFILPYVAIVQEKIWALSPFAVQLDFLIEEYAGGKGSLPPKKRRKKNTIYIATIEKGLALVRSLIELRRLDELGLIVVDELHLIGEKGRGGTLETLLTTVIFVNQNIQIVGMSATIGNLSEVATFLKAEVYERHFRPVELTEYVKLGSTLHRMLWTDEGLELVPDRELDFNYSAEQRARDPDGVCGLLRGGRAALVFCPTQRSCENVAATVAAMLPPEMADGRAEERLALVEALRAEGSTDALLQAASCGVAYHHAGLATDERHLLEQAFRSGVLSTICCTSTLAAGVNLPAARVLLRGAAGARGGPPALSAAAYRQMAGRAGRAGLAAAGESILICSPQQWEHLKPVLEAGVAPVTSVLRPSLESLILSAVTLQLADTGPELKRLLDSTFMAVPKAAESAAADTRAACQEVLRSLTRAGVLDVKGQRKLNQDNDDEELYNSQFVVSRLGQAAVKGCLSVEAARRLVAELRRAARGLVLCGPLHLLYLAAPHDDPVRPDPRHFYSLYCELDEEGLQTAKALGINETNAIRMMTGRPMASVPSLVVSRFYMALMLRDLWRHMPLHAVADNAQAVYSVQIPGGAGPRAVAADGGVRGGGGRGGGVRGAGGGALRRAAAAAGAGAQDVRSSATTPAHGTASREKSPCAAADACGIQENRRRR

Uniprot

A0A2A4JT77 A0A3S2P889 A0A194RM90 A0A194PCN5 A0A1W4X6Y4 A0A1Y1LMT2 + More
N6T8U5 U4UPH1 B4HJ00 A0A0J9UGT5 A0A0J7L590 A0A1A9ZMJ8 A0A1B0AQB5 A0A1B0G3Y5 A0A1A9VN33 A0A2A3EBE9 E9IA61 A0A1A9WCV6 A0A195F9L7 A0A195CGN8 A0A0M3QW18

Pubmed

26354079 28004739 23537049 17994087 22936249 21282665 + More

EMBL

NWSH01000725 PCG74592.1 RSAL01000208 RVE44274.1 KQ460205 KPJ17101.1 + More
KQ459606 KPI91056.1 GEZM01057476 JAV72317.1 APGK01039350 KB740970 ENN76644.1 KB632388 ERL94373.1 CH480815 EDW40654.1 CM002912 KMY98290.1 LBMM01000539 KMQ98107.1 JXJN01001784 CCAG010017308 KZ288293 PBC29055.1 GL761987 EFZ22552.1 KQ981727 KYN36744.1 KQ977791 KYM99877.1 CP012525 ALC43373.1

Proteomes

UP000218220 UP000283053 UP000053240 UP000053268 UP000192223 UP000019118 + More
UP000030742 UP000001292 UP000036403 UP000092445 UP000092460 UP000092444 UP000078200 UP000242457 UP000091820 UP000078541 UP000078542 UP000092553

Pfam

PF00270 DEAD + More
PF00271 Helicase_C

Interpro

IPR001650   Helicase_C        + More
IPR014001   Helicase_ATP-bd
IPR011545   DEAD/DEAH_box_helicase_dom
IPR027417   P-loop_NTPase

SUPFAM

SSF52540 SSF52540

CDD

cd00079 HELICc

ProteinModelPortal

A0A2A4JT77 A0A3S2P889 A0A194RM90 A0A194PCN5 A0A1W4X6Y4 A0A1Y1LMT2 + More
N6T8U5 U4UPH1 B4HJ00 A0A0J9UGT5 A0A0J7L590 A0A1A9ZMJ8 A0A1B0AQB5 A0A1B0G3Y5 A0A1A9VN33 A0A2A3EBE9 E9IA61 A0A1A9WCV6 A0A195F9L7 A0A195CGN8 A0A0M3QW18

PDB

5AGA E-value=7.42781e-55, Score=545

KEGG

101741767 K19178 POLQ-like helicase [EC:3.6.4.12] | (RefSeq) helicase POLQ-like

GO

GO:0005524 GO:0003676 GO:0004386 GO:0009949 GO:0009951 GO:0030717 GO:0007294 GO:0008298 GO:0016321 GO:0016021 GO:0016020 GO:0015074 GO:0005215 GO:0008270 GO:0022891 GO:0003707 GO:0051537

Length:

1012

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.00378

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03334

outside

1 - 1012

Pi

209.65911

Theta

149.786057

Tajima's D

1.011168

CLR

1.077932

CSRT

0.664916754162292

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics