Silkworm Genome Informatics Database

Gene

KWMTBOMO07586 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013699

Annotation

PREDICTED:_ribosomal_RNA-processing_protein_8_[Plutella_xylostella]

Location

Bomo_Chr13(+):932592-936515 View in EpiBrowser

Full name

Ribosomal RNA-processing protein 8

Location in the cell

Mitochondrial Reliability : 2.638

CDS

ATGTTCAAAATACCGGAATGGGATAGTTATGTGCCCAAATCAAATATTAAATTCAGTAGGAAAACCGTCAAGGCAAAATCACAAAACTTAATACTGAAAACTGAAACTCCAATAAATATTGAATTAACCAACACCAAGCAGTTTCCAAAAAGTGCCAATAAAAATGATGATCAAGAAGATATTTTATTTAAAGAAAGCAAAGGAAAGAAAGCAAAACACCTTAAAACCAGCAAGGATGAAAATATAAATAAATTAGAAGCATCAAATTATGTTAAAATTGATTTTAAAAAAGAAAAACTAAGAAAGATGTTACAAGAAAACTCATTGAGAAGTCGTTTTACTGTTAATGTGAGAAACGGAAACAAGTTGAGGGAGAGAATGCTTGAAAGATTAAAAGCTGCACAATTCAGGTACCTCAATGAAAAACTATACACATCATCAGGTACAGAAGCTCATCAATTATTCCAGAGTGATCCCGCTGCCTTCAAAACTTACCATGAAGGTTACCAGCAACAACTCAAGAAGTGGCCCATCAATCCATTAGACCTAATTGTAAAGAGGATTCAGAAAATGCCTAAAACACATAAAATAGCTGATATGGGTTGTGGAGAAGCTGCGCTGTCACATCGTGTACCCCATCCAGTTCGGTCCTTTGATTTGGTAGCCACTACACCAAGTGTAGAAGTGTGTAACATAGCACATACCCCACTGCTGGCAGCGTCCATGGATGTTGCAGTCTATTGTTTAGCACTAATGGGCACTGAACTCACTCAGTACTTGGTCGAAGCTAGTAGAATATTGAAAATTGGAGGCCATCTTCTAATAGCAGAAGTTGAGAGTCGTTTTGAAAAAGTTGAGGACTTTACTAAAGCAGTAGAGCGGATCGGATTCAAACTAATTAAACTGGACAAGAGTCACACCGTCTTCTACTTCATGGAGTTCACGAAAATACGAGACGCGCCCGTGAAGAAATCCAAACTACCCGCTTTGACGCTTAAACCTTGTCTTTATAAGAGACGATAA

Protein

MFKIPEWDSYVPKSNIKFSRKTVKAKSQNLILKTETPINIELTNTKQFPKSANKNDDQEDILFKESKGKKAKHLKTSKDENINKLEASNYVKIDFKKEKLRKMLQENSLRSRFTVNVRNGNKLRERMLERLKAAQFRYLNEKLYTSSGTEAHQLFQSDPAAFKTYHEGYQQQLKKWPINPLDLIVKRIQKMPKTHKIADMGCGEAALSHRVPHPVRSFDLVATTPSVEVCNIAHTPLLAASMDVAVYCLALMGTELTQYLVEASRILKIGGHLLIAEVESRFEKVEDFTKAVERIGFKLIKLDKSHTVFYFMEFTKIRDAPVKKSKLPALTLKPCLYKRR

Description

Probable methyltransferase required to silence rDNA.

Similarity

Belongs to the methyltransferase superfamily. RRP8 family.

Uniprot

H9JVY6 A0A2A4JT06 A0A2H1X311 A0A194RIE7 A0A194PED5 A0A2A3ED18 + More
J3JTX4 A0A0M8ZSP0 A0A3L8E2T8 A0A026W416 K7J5F7 U4UJY5 N6U4X5 A0A158NEH6 A0A195BWV9 A0A195ENA8 A0A146M8Y4 A0A151XJJ4 A0A2M4BRI5 A0A1Y9G8G7 Q175J6 A0A1S4FE94 V5HAS3

EC Number

2.1.1.-

Pubmed

19121390 26354079 22516182 30249741 24508170 20075255 + More
23537049 21347285 26823975 17510324 25765539

EMBL

BABH01036512 NWSH01000725 PCG74593.1 ODYU01013048 SOQ59695.1 KQ460205 + More
KPJ17100.1 KQ459606 KPI91054.1 KZ288293 PBC29056.1 BT126684 AEE61646.1 KQ435898 KOX69176.1 QOIP01000001 RLU26956.1 KK107447 EZA50748.1 KB632388 ERL94374.1 APGK01039350 KB740970 ENN76645.1 ADTU01013343 KQ976401 KYM92446.1 KQ978625 KYN29641.1 GDHC01002415 JAQ16214.1 KQ982080 KYQ60370.1 GGFJ01006538 MBW55679.1 CH477399 EAT41758.1 GANP01004013 JAB80455.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000242457 UP000053105 + More
UP000279307 UP000053097 UP000002358 UP000030742 UP000019118 UP000005205 UP000078540 UP000078492 UP000075809 UP000069272 UP000008820

PRIDE

H9JVY6

Pfam

PF05148 Methyltransf_8 + More
PF03031 NIF

Interpro

IPR042036   RRP8_N        + More
IPR007823   RRP8
IPR029063   SAM-dependent_MTases
IPR004274   FCP1_dom
IPR036412   HAD-like_sf
IPR023214   HAD_sf
IPR023576   UbiE/COQ5_MeTrFase_CS

SUPFAM

SSF53335 SSF53335 + More
SSF56784 SSF56784

Gene 3D

1.10.10.2150 3.40.50.1000

ProteinModelPortal

H9JVY6 A0A2A4JT06 A0A2H1X311 A0A194RIE7 A0A194PED5 A0A2A3ED18 + More
J3JTX4 A0A0M8ZSP0 A0A3L8E2T8 A0A026W416 K7J5F7 U4UJY5 N6U4X5 A0A158NEH6 A0A195BWV9 A0A195ENA8 A0A146M8Y4 A0A151XJJ4 A0A2M4BRI5 A0A1Y9G8G7 Q175J6 A0A1S4FE94 V5HAS3

PDB

2ZFU E-value=5.17163e-56, Score=550

KEGG

101739263 K14850 ribosomal RNA-processing protein 8 [EC:2.1.1.287] | (RefSeq) ribosomal RNA-processing protein

GO

GO:0008168 GO:0005730 GO:0006364 GO:0016021 GO:0016020 GO:0015074 GO:0005215 GO:0008270 GO:0022891 GO:0003707 GO:0051537

PANTHER

PTHR12787

Subcellular location

Length:

340

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02062

outside

1 - 340

Pi

207.880285

Theta

177.269045

Tajima's D

0.367255

CLR

0

CSRT

0.475876206189691

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics