Gene

KWMTBOMO07583

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr13(+):873919-875367      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.337

CDS

ATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGTTAACCCCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGATCATCGAAACAAGTTTTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTCAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTTAGGCCGACTCGCGGCCTTTGATGATGACGAAAAAGCAGAACTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCGGATGCATTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGTATATCTAACCGCGTTATTAAACTCCTACCCGTCCAACTCATCGTGA

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVLAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPLGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDVYLTALLNSYPSNSS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   K7IN67   A0A1B6MIM7   U4UGQ8   A0A2S2P6H1   X1WNI2   A0A087THU2   X1WK15   J9LC21   A0A139WA11   X1WQI9   A0A2S2NJB5   A0A023EYS8   X1X0M4   A0A087U3K8   A0A2S2QEE0   A0A087UCW3   A0A087T3W0   J9KKL6   A0A1Y1K0C8   A0A224XB44   T1ID59   A0A2S2PEZ9   A0A2S2QV22   X1WLB2   A0A224X6Q4   J9LVT4   A0A2S2N6Q7   J9LFC9   J9KPF1   V5GNF3   X1WVL6   A0A1B6C2V8   A0A0J7K0R9   A0A2S2PJ52   J9LR29   A0A2S2PPK8   A0A2J7PP17   A0A224X6T4   A0A1Y1MZU1   A0A224XJI0   A0A2S2Q383   X1WKS2   J9KRU7   J9MAR0   A0A224X6W2   A0A0J7K503   A0A224X6S1   A0A2S2PJG2   A0A1B6MLS9   J9MAC6   A0A2S2NCK2   A0A2S2R2E8   A0A2A4IUM2   A0A087UB64   J9LHE0   A0A069DZL8   A0A2J7R7D0   X1WZH0   X1X033   U4UJ93   X1WXR6   J9LPH9   A0A1Y1MT28   A0A3S2NJ07   A0A2S2PXP8   A0A224X6U5   A0A2H8TF37   A0A2S2QDN9   A0A2S2PA10   A0A0V0G5B6   A0A2S2P6S3   J9JZG6   A0A2S2QQB9   J9M522   A0A224XI99   A0A2S2NH02   A0A0L7KVB3   J9JS95   A0A232EV57   A0A224XIB0   A0A2S2R7N0   A0A224X746   A0A023F1L2   A0A224X7Z3   A0A2M4CV42   A0A142LX49   A0A2M4AQV0   A0A1Y1LKN6   A0A2S2Q2R8   A0A2M4AQK3  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    23537049    25474469    26334808    26227816    28648823    25527032   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    GEBQ01004157    JAT35820.1    KB632143    ERL89075.1    GGMR01012189    MBY24808.1    ABLF02008153    ABLF02008462    ABLF02008464    KK115285    KFM64681.1    ABLF02012584    ABLF02013765    ABLF02024884    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    KQ971729    KYB24751.1    ABLF02022418    GGMR01004661    MBY17280.1    GBBI01004395    JAC14317.1    ABLF02065839    KK118005    KFM71947.1    GGMS01006359    MBY75562.1    KK119261    KFM75202.1    KK113281    KFM59799.1    ABLF02015631    ABLF02021986    ABLF02021987    ABLF02021991    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GFTR01008262    JAW08164.1    ACPB03027378    GGMR01015412    MBY28031.1    GGMS01012398    MBY81601.1    ABLF02042518    ABLF02057746    GFTR01008279    JAW08147.1    ABLF02003241    ABLF02003242    ABLF02025904    GGMR01000226    MBY12845.1    ABLF02023911    ABLF02041767    GALX01005359    JAB63107.1    ABLF02042385    GEDC01029594    JAS07704.1    LBMM01018021    KMQ83899.1    GGMR01016297    MBY28916.1    ABLF02025082    ABLF02039175    ABLF02041809    GGMR01018716    MBY31335.1    NEVH01023280    PNF18085.1    GFTR01008261    JAW08165.1    GEZM01021868    JAV88847.1    GFTR01008257    JAW08169.1    GGMS01002992    MBY72195.1    ABLF02005245    ABLF02013477    ABLF02047385    ABLF02066435    ABLF02010814    ABLF02010815    ABLF02037860    ABLF02037869    ABLF02037715    GFTR01008260    JAW08166.1    LBMM01014024    KMQ85369.1    GFTR01008271    JAW08155.1    GGMR01016905    MBY29524.1    GEBQ01003077    JAT36900.1    ABLF02007779    ABLF02007782    ABLF02050375    GGMR01002322    MBY14941.1    GGMS01014910    MBY84113.1    NWSH01007753    PCG62823.1    KK119069    KFM74603.1    ABLF02014934    ABLF02014939    ABLF02017810    GBGD01000415    JAC88474.1    NEVH01006736    PNF36716.1    ABLF02034467    ABLF02066437    KB632327    ERL92508.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    ABLF02009591    ABLF02009592    ABLF02009594    ABLF02066703    GEZM01021881    JAV88842.1    RSAL01000708    RVE41206.1    GGMS01001094    MBY70297.1    GFTR01008251    JAW08175.1    GFXV01000908    MBW12713.1    GGMS01006655    MBY75858.1    GGMR01013409    MBY26028.1    GECL01003538    JAP02586.1    GGMR01012443    MBY25062.1    ABLF02037436    GGMS01010725    MBY79928.1    ABLF02024246    GFTR01008256    JAW08170.1    GGMR01003864    MBY16483.1    JTDY01005246    KOB67202.1    ABLF02028535    ABLF02028545    NNAY01002052    OXU22233.1    GFTR01008246    JAW08180.1    GGMS01016818    MBY86021.1    GFTR01008151    JAW08275.1    GBBI01003811    JAC14901.1    GFTR01007929    JAW08497.1    GGFL01005012    MBW69190.1    KU543685    AMS38375.1    GGFK01009846    MBW43167.1    GEZM01053022    JAV74219.1    GGMS01002786    MBY71989.1    GGFK01009732    MBW43053.1   

Proteomes

UP000053268    UP000007266    UP000002358    UP000030742    UP000007819    UP000054359    + More
UP000015103    UP000036403    UP000235965    UP000218220    UP000283053    UP000037510    UP000215335   

PRIDE

Q93137    Q9BPQ0    Q9XXW0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF14291   DUF4371
PF07727   RVT_2
PF03372   Exo_endo_phos
PF03564   DUF1759
PF18701   DUF5641
PF00665   rve
PF05380   Peptidase_A17
PF17921   Integrase_H2C2
PF05585   DUF1758
PF05699   Dimer_Tnp_hAT

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR025398   DUF4371       
IPR013103   RVT_2       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR005312   DUF1759       
IPR040676   DUF5641       
IPR008737   Peptidase_asp_put       
IPR008042   Retrotrans_Pao       
IPR012337   RNaseH-like_sf       
IPR001584   Integrase_cat-core       
IPR008906   HATC_C_dom       
IPR006580   Znf_TTF       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       

Gene 3D

3.60.10.10     3.30.420.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   K7IN67   A0A1B6MIM7   U4UGQ8   A0A2S2P6H1   X1WNI2   A0A087THU2   X1WK15   J9LC21   A0A139WA11   X1WQI9   A0A2S2NJB5   A0A023EYS8   X1X0M4   A0A087U3K8   A0A2S2QEE0   A0A087UCW3   A0A087T3W0   J9KKL6   A0A1Y1K0C8   A0A224XB44   T1ID59   A0A2S2PEZ9   A0A2S2QV22   X1WLB2   A0A224X6Q4   J9LVT4   A0A2S2N6Q7   J9LFC9   J9KPF1   V5GNF3   X1WVL6   A0A1B6C2V8   A0A0J7K0R9   A0A2S2PJ52   J9LR29   A0A2S2PPK8   A0A2J7PP17   A0A224X6T4   A0A1Y1MZU1   A0A224XJI0   A0A2S2Q383   X1WKS2   J9KRU7   J9MAR0   A0A224X6W2   A0A0J7K503   A0A224X6S1   A0A2S2PJG2   A0A1B6MLS9   J9MAC6   A0A2S2NCK2   A0A2S2R2E8   A0A2A4IUM2   A0A087UB64   J9LHE0   A0A069DZL8   A0A2J7R7D0   X1WZH0   X1X033   U4UJ93   X1WXR6   J9LPH9   A0A1Y1MT28   A0A3S2NJ07   A0A2S2PXP8   A0A224X6U5   A0A2H8TF37   A0A2S2QDN9   A0A2S2PA10   A0A0V0G5B6   A0A2S2P6S3   J9JZG6   A0A2S2QQB9   J9M522   A0A224XI99   A0A2S2NH02   A0A0L7KVB3   J9JS95   A0A232EV57   A0A224XIB0   A0A2S2R7N0   A0A224X746   A0A023F1L2   A0A224X7Z3   A0A2M4CV42   A0A142LX49   A0A2M4AQV0   A0A1Y1LKN6   A0A2S2Q2R8   A0A2M4AQK3  

KEGG

NA   

GO

GO:0003964   GO:0004519   GO:0016021   GO:0003676   GO:0015074   GO:0046983  

Length:

421

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07435

Exp number, first 60 AAs:

0.05484

Total prob of N-in:

0.02662

outside

1  -  421

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0

CSRT

0

Interpretation

Uncertain