Gene

KWMTBOMO07578

Pre Gene Modal

BGIBMGA013723

Annotation

PREDICTED:_transmembrane_and_TPR_repeat-containing_protein_1-like_[Bombyx_mori]

Location

Bomo_Chr13(-):620911-646648      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.813

CDS

ATGGACATCGCAGTATCAATGCCGCTTCTGATCTTGATACATGAGGTGGCCGGTGTGGTGGGGCGTGCAGACGTGTTAGCCTGTGTCTTCTTTCTCACATCTATTCTTCTTTATCACGGAACAAACAATCACCGTGTCTGGGGGAGTGTAGCAGCTGGTGCCCTTAGCATGTTGGCCAAGGAGACAGGACTCACTGCCTTACTCTTCAATGCTGCACTGGACCTGTACAGATGTTGGGCTCATGTGCACAGATCTTCGTCAGCAGTAAAATGGCGTTGGAAAGACAGTCCTTACGGCAGAGCATTTAAAACTCTAGCAGCTCTCAGTTTACTGGCTGGAGCAAGACTAGCATTACTACAAGGTTCCTTACCGGCTTTTTCACCACAGGACAATCCACCTGCTTTCCATCCTTCATTTGCTGTCAGGTTGATGACCTTTTGCTACTTGGCCGCTTTCAACTGGTGGCTGCTAGTGTGTCCATGGACTTTAAGTCACGATTGGCAGATGGGCTCAGTACCATTGATCACCAACGTCAGCGATCTAAGGAATTTAGTCACCTGTGCTGCCATGTGCGCTTTGTTTGGTCTCTGTTACAGATGTCTGCTCGATTTGGAGATGCAGCGTCATACTCCAGCGGTTGTGGGATTAATGCTGCTCGTCATTCCATATCTCCCTGCCTCCAACCTGCTTGTCACTGTGGGTTTCGTCATCGCTGAACGAGTGTTGTATATTCCCAGTGTGGGCTCAGTATTGTTGACTGCGTATGGAATTGAACTGATGTGGAAGCGAGGGTTTAGAACGAAGAAGCTGCTAGTGCTATGCGTTGCAACACTAGTGGCTGCAGGAGTAGCGAAAACACATCTTAGAAACAGAGATTGGAGAACTAGAGAATCTTTACTAAGAGCTGATCTCTCAGTGTTGCCACATAACGCAAAATTACACTACAATTTCGCTAATTTCTTGAAGGACGTCGAGCAGCACGAGATTGCCATCAAACATTACAAGGAAGCATTGAAATTGTGGCCAAGTTACGCGAGTGCCCACAATAACTTGGGCACGCTGGTGCTGGCATCGGGGAGGGCGGAGCACCACTTCCTTCAAGCCCTTAAATACAACAAAGACCACGTTAACGCTCATTACAATCTCGCTAAATTATACAGAAAGAAGAATAGAATACCGGAGGCTCTTAGGATGTTGGAACGTTGCATAACTTTAGAACCAAGATTCGTTCAAGCATATCTGGAACTGTTACTGATGAAACCTGATGAAGAGAAAAGGTGGATCTTGAACAAACTGCTAGAGTTAGAGCCCTACAACTGGGAGCACTATCTTCTTTATGGAAACTGGCTGAGAGGACGAGGTCTTCTCCCGTTATCACTAGAATACTATAGAACAGCGATGCGTCTGTCATTCAGTACGCGACACAACAGTCCGAGGGGCGAGTTACTGTCGCTGCGAGCTGCATGCCTGGCGCTACGGGACACCGGCCAGTACGCGAGGATGCTGCAGTTATTAGTCAGATGGCACGCAGGTCGGGGCGGGCAGCCAGCCGGGGCTCGGCTGCTGGCGGCGCGGGCCTGGATTCTTCGCTCCCAGCTGGCGCGGCGTGCGGCTCTCTACTCCCACACGCATCGACAGATGACATCAACATGCCTACACCACAGTCAACTGGAGGTGTCGCCGGAATTATACATAGATTTTAAACAACAAGACGTCAAACCTAGTTCAAGGCTACACGCGCACGACGCGAAACTTCCCACCACTAATAGCGTAGAGAAGAATTGCCAAAAAACCCACGAAAAAAGTGTGCTCTCAGCCCAGTACAAACCGACTCATAATAAATCTGAAACAGGTCATAAATTGAAAAGTTGTCCTCTGAATAAAAAGAAGGAACGTCGAATAAAAGATCCGGAGACGTTTCCATCTTTTGTTTCGGATCATTTAATTAAGACGTATTAA

Protein

MDIAVSMPLLILIHEVAGVVGRADVLACVFFLTSILLYHGTNNHRVWGSVAAGALSMLAKETGLTALLFNAALDLYRCWAHVHRSSSAVKWRWKDSPYGRAFKTLAALSLLAGARLALLQGSLPAFSPQDNPPAFHPSFAVRLMTFCYLAAFNWWLLVCPWTLSHDWQMGSVPLITNVSDLRNLVTCAAMCALFGLCYRCLLDLEMQRHTPAVVGLMLLVIPYLPASNLLVTVGFVIAERVLYIPSVGSVLLTAYGIELMWKRGFRTKKLLVLCVATLVAAGVAKTHLRNRDWRTRESLLRADLSVLPHNAKLHYNFANFLKDVEQHEIAIKHYKEALKLWPSYASAHNNLGTLVLASGRAEHHFLQALKYNKDHVNAHYNLAKLYRKKNRIPEALRMLERCITLEPRFVQAYLELLLMKPDEEKRWILNKLLELEPYNWEHYLLYGNWLRGRGLLPLSLEYYRTAMRLSFSTRHNSPRGELLSLRAACLALRDTGQYARMLQLLVRWHAGRGGQPAGARLLAARAWILRSQLARRAALYSHTHRQMTSTCLHHSQLEVSPELYIDFKQQDVKPSSRLHAHDAKLPTTNSVEKNCQKTHEKSVLSAQYKPTHNKSETGHKLKSCPLNKKKERRIKDPETFPSFVSDHLIKTY

Uniprot

A0A2H1VQ98   A0A2A4JI66   A0A2A4JJL1   A0A212EMG9   A0A0N1IEF5   A0A194PIY1   + More
A0A194RHT7   A0A194PDJ1   A0A3S2LRN5   A0A2H1V1T9   A0A0L7LR60   A0A336KPG1   D6WAH1   A0A087ZQP9   A0A3L8E3Q0   A0A2C9H6G0   A0A1B6IMY3   E0VKZ8   A0A1J1J8M9   J9KBD8   A0A2S2NY28   A0A2H8TL04   A0A2S2QZX7   A0A3B3CL08   A0A1A8CWI6   Q4SZ08   A0A1A8U0B2   A0A1A8MM39   A0A1A8QWS5   A0A1A8FI83   A0A1S3SGI6   A0A146VID1   A0A1A8IGM2   A0A146Q8K5   A0A146PTH2   A0A146VHJ9   A0A1S3MZK1   A0A146ZS10   A0A3P9CVB1   A0A3Q3KLT7   A0A3Q3N444   A0A1A7YQD9   A0A3B1KBM3   A0A1A8M4L0   A0A2D0T657   A0A3P8PZN6   A0A2Y9REW1   F1QF84   T1J4S4   A0A1S3H6C7   A0A3P9IBC1   H2MCF2   A0A3P9PA00   A0A3P8UWG6   A0A3P8UWH1   V4CNL0   A0A147BMK6   A0A3P9LE65   A0A3B3REW5   A0A341AGN4   A0A2J8WC27   A0A195ED44   A0A2I4C0J8   A0A3Q3BFX4  

Pubmed

22118469    26354079    26227816    18362917    19820115    30249741    + More
20566863    29451363    15496914    25186727    25329095    23594743    17554307    24487278    23254933    29652888    29240929   

EMBL

ODYU01003801    SOQ43021.1    NWSH01001302    PCG71785.1    PCG71784.1    AGBW02013845    + More
OWR42669.1    KQ460545    KPJ14077.1    KQ459606    KPI91045.1    KQ460205    KPJ17127.1    KPI91078.1    RSAL01000288    RVE42938.1    ODYU01000286    SOQ34779.1    JTDY01000277    KOB77947.1    UFQS01000686    UFQT01000686    SSX06207.1    SSX26561.1    KQ971312    EEZ97998.1    QOIP01000001    RLU27370.1    GECU01019439    JAS88267.1    DS235255    EEB14054.1    CVRI01000074    CRL08148.1    ABLF02040630    ABLF02040638    ABLF02040658    ABLF02040661    GGMR01009500    MBY22119.1    GFXV01002924    MBW14729.1    GGMS01014108    MBY83311.1    HADZ01019095    SBP83036.1    CAAE01011868    CAF94124.1    HADY01024443    HAEJ01000559    SBS41016.1    HAEF01016320    SBR57479.1    HAEH01013764    SBR98250.1    HAEB01012011    HAEC01002462    SBQ58538.1    GCES01069596    JAR16727.1    HAED01010069    SBQ96281.1    GCES01134206    JAQ52116.1    GCES01139171    JAQ47151.1    GCES01069595    JAR16728.1    GCES01017616    JAR68707.1    HADW01005313    HADX01010166    SBP32398.1    HAEF01011145    SBR51747.1    CT573126    CU861462    FO681318    JH431849    KB199905    ESP03985.1    GEGO01003377    JAR92027.1    NDHI03003395    PNJ67291.1    KQ979074    KYN23031.1   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000283053    UP000037510    + More
UP000007266    UP000005203    UP000279307    UP000075920    UP000009046    UP000183832    UP000007819    UP000261560    UP000087266    UP000265000    UP000265160    UP000261600    UP000261640    UP000018467    UP000221080    UP000265100    UP000248480    UP000000437    UP000085678    UP000265200    UP000001038    UP000242638    UP000265120    UP000030746    UP000265180    UP000261540    UP000252040    UP000078492    UP000192220    UP000264800   

Pfam

PF13181   TPR_8        + More
PF08409   DUF1736
PF07720   TPR_3
PF07719   TPR_2
PF13174   TPR_6
PF00515   TPR_1

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR013618   DUF1736       
IPR013105   TPR_2       
IPR011716   TPR-3       
IPR003107   HAT       
IPR001440   TPR_1       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A2H1VQ98   A0A2A4JI66   A0A2A4JJL1   A0A212EMG9   A0A0N1IEF5   A0A194PIY1   + More
A0A194RHT7   A0A194PDJ1   A0A3S2LRN5   A0A2H1V1T9   A0A0L7LR60   A0A336KPG1   D6WAH1   A0A087ZQP9   A0A3L8E3Q0   A0A2C9H6G0   A0A1B6IMY3   E0VKZ8   A0A1J1J8M9   J9KBD8   A0A2S2NY28   A0A2H8TL04   A0A2S2QZX7   A0A3B3CL08   A0A1A8CWI6   Q4SZ08   A0A1A8U0B2   A0A1A8MM39   A0A1A8QWS5   A0A1A8FI83   A0A1S3SGI6   A0A146VID1   A0A1A8IGM2   A0A146Q8K5   A0A146PTH2   A0A146VHJ9   A0A1S3MZK1   A0A146ZS10   A0A3P9CVB1   A0A3Q3KLT7   A0A3Q3N444   A0A1A7YQD9   A0A3B1KBM3   A0A1A8M4L0   A0A2D0T657   A0A3P8PZN6   A0A2Y9REW1   F1QF84   T1J4S4   A0A1S3H6C7   A0A3P9IBC1   H2MCF2   A0A3P9PA00   A0A3P8UWG6   A0A3P8UWH1   V4CNL0   A0A147BMK6   A0A3P9LE65   A0A3B3REW5   A0A341AGN4   A0A2J8WC27   A0A195ED44   A0A2I4C0J8   A0A3Q3BFX4  

PDB

5LVV     E-value=9.23307e-12,     Score=172

KEGG

101742494    K23424 protein O-mannosyl-transferase [EC:2.4.1.-] | (RefSeq) transmembrane and TPR repeat-containin

GO

GO:0016021   GO:0006396   GO:0016740   GO:0005515   GO:0022857   GO:0003676   GO:0015074   GO:0005215   GO:0008270   GO:0016020   GO:0022891   GO:0003707   GO:0051537  

Length:

652

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

134.103590000001

Exp number, first 60 AAs:

25.26578

Total prob of N-in:

0.19192

POSSIBLE N-term signal

sequence

outside

1  -  14

TMhelix

15  -  37

inside

38  -  96

TMhelix

97  -  119

outside

120  -  138

TMhelix

139  -  161

inside

162  -  180

TMhelix

181  -  198

outside

199  -  212

TMhelix

213  -  235

inside

236  -  241

TMhelix

242  -  261

outside

262  -  652

 

 

Pi

20.554832

Theta

19.084152

Tajima's D

1.340369

CLR

0.894419

CSRT

0.757562121893905

Interpretation

Uncertain