Silkworm Genome Informatics Database

Gene

KWMTBOMO07561

Annotation

PREDICTED:_guanine_nucleotide_binding_protein_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr12(-):17453029-17463406 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.769

CDS

ATGGAGAGTCGCGCGTGGGTGTGGTGGCTGGGAGTGGCGGCGCTGGCGAGCGCGCGCGAGCTGGACCCGGCCGCCTGCGTGGCGCGCTTCGACGTGCAGCGAGACAAGATCATCCGCACCGAGGAGTCCCGCGAGATGGGCGCCCGCTACCTCTCCGAGCTTGACGTGGGCACGAGAGCGGAATGCCTGCGACTCTGCTGTGAAACTGAAGCCTGCGACGTCTTCGTCTATGAGGAAAAGGGTCCCGGCAGCTGCTACTTGTTCAAGTGTGGACCGCCCGAAGACTTCCGCTGCAAGTTCACGGCTCACAGTAACTTCAGTAGCGGAGTGCTGGCGCTGAGTCGCCGCCTGGCCGAGCTGCAGGACCAGGAGCAACGCGCCCACCACGAGCGGGAACTCGCCAACCTCAGTCACATGTTGGGAACGCGCTACAGGAGCGGGCCGGGCACCGCCGCGAGCACCAGCACGACGCCCGCGCCGCCGCCCCCGCCCCCGCCCCGCACGAACTTACCTCTCCAGTCTCCGGCCCCCACGCCGGGTCGATGCCGCTGGAACCAGTTCGAGTGTCGTCGCGGCGGGGAGTGCGTCGCGGTGTACAACGCGTGCGACGGCGTGCCGCAGTGCGCCGACGGCAGCGACGAGCCGCCCCAGCTGTCGTGTCCATCCCCCCCAACCGCCCCCTCCGCCCTCCCCATCACCACCGTGCCGACCACCACGCGGCACGCACCACCGATGCAGGACAGCATGGACCTGAGCGTGGGCAGCGACAGTCTCGTGGACGGAGACCGGTGGCCGCACCGGCTGACGCAGGCTCAGCCGCCACACAGATACACGGAGTCCGGTCCGAGCTCTCATATCTTCAGTCACAAGGGCGGGTTGCTTCAGGAGCCGAGCGGCGACGCCCAGTTCCCCGCCTTCGAGCCCCCCTGGCAGCGACGGCCTTGGGGATCGCAAGCCGGTGTGGGAGGGATGGAGGAGCGTGGGTGGGGGGCAGGATACCCGCGGCTCGCGTGGCCCGAGCCCGACCTGCGCCGCGCCTGGCCCGTTCCGCAGCAGCGACAAGACACGGAGATGCAGATGTATATGCCTGCGAAGACAATGCCCGAGGTGCCGATAGTGTACTCTAGTCAGCAACAAACTCTCCGCGACGGACCTAAGAAGGGCCTGGAGCTGCCACCCCCCACCGCCCCGCCACCCTCCCCTGCTCCCGATCTGAGAGAGGAGAACAAGCCGCCCCTACTTGAGAATCATACTAAGAAGAAACCTATTAAAGAAATAATACAGACGGCAGAGTCGAACAAGGCGGTCGCGCGGGAGCCCGGCGGCGCGGCGTCGGCCCGGCGCCACCCCGCGCCCCCGCCCCCGCTCGACGACCACGACGGCCTCAGTGAGCATCCCCCCGCCGCCGTGCTGCTGCTAGTGCTCGGCGTGTCGCTGACGGGCGCGCTGGCGGGCATGCTGGCGTGTCGTGCGCGCGCGGCGCGGCGCCGGCTGCGACGCAAGTCCGCGCTGGCGCACGACGCGGACTACCTCGTCAACGGGATGTACCTGTAG

Protein

MESRAWVWWLGVAALASARELDPAACVARFDVQRDKIIRTEESREMGARYLSELDVGTRAECLRLCCETEACDVFVYEEKGPGSCYLFKCGPPEDFRCKFTAHSNFSSGVLALSRRLAELQDQEQRAHHERELANLSHMLGTRYRSGPGTAASTSTTPAPPPPPPPRTNLPLQSPAPTPGRCRWNQFECRRGGECVAVYNACDGVPQCADGSDEPPQLSCPSPPTAPSALPITTVPTTTRHAPPMQDSMDLSVGSDSLVDGDRWPHRLTQAQPPHRYTESGPSSHIFSHKGGLLQEPSGDAQFPAFEPPWQRRPWGSQAGVGGMEERGWGAGYPRLAWPEPDLRRAWPVPQQRQDTEMQMYMPAKTMPEVPIVYSSQQQTLRDGPKKGLELPPPTAPPPSPAPDLREENKPPLLENHTKKKPIKEIIQTAESNKAVAREPGGAASARRHPAPPPPLDDHDGLSEHPPAAVLLLVLGVSLTGALAGMLACRARAARRRLRRKSALAHDADYLVNGMYL

Uniprot

H9J8L6 A0A182M6E8 A0A1J1IRI6

Pubmed

19121390

EMBL

BABH01038620 BABH01038621 BABH01038622 AXCM01002412 CVRI01000058 CRL02853.1 + More

Proteomes

UP000005204 UP000075883 UP000183832

PRIDE

H9J8L6

Pfam

PF07502 MANEC + More
PF00057 Ldl_recept_a

Interpro

IPR002172   LDrepeatLR_classA_rpt        + More
IPR036055   LDL_receptor-like_sf
IPR011106   MANSC_N
IPR023415   LDLR_class-A_CS
IPR013980   MANSC_dom
IPR003609   Pan_app

SUPFAM

SSF57424 SSF57424

Gene 3D

4.10.400.10

CDD

cd00112 LDLa

ProteinModelPortal

H9J8L6 A0A182M6E8 A0A1J1IRI6

PDB

2MSX E-value=0.000994628, Score=101

KEGG

692993 no KO assigned | (RefSeq) guanine nucleotide binding protein

GO

GO:0016021 GO:0005515 GO:0006032 GO:0004553 GO:0005975 GO:0030170 GO:0015914 GO:0016020 GO:0003707 GO:0051537

SignalP

Position: 1 - 18, Likelihood: 0.975640

Length:

517

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.47942

Exp number, first 60 AAs:

0.08447

Total prob of N-in:

0.00457

outside

1 - 468

TMhelix

469 - 491

inside

492 - 517

Pi

2.017732

Theta

5.745484

Tajima's D

-1.730906

CLR

36.675421

CSRT

0.0305984700764962

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics