Gene
KWMTBOMO07556
Pre Gene Modal
BGIBMGA005847
Annotation
sid-1-related_gene3_precursor_[Bombyx_mori]
Location in the cell
PlasmaMembrane Reliability : 4.656
Sequence
CDS
ATGATCTCGTGGTGCGCCCTAGCCTTGTGCGTGAGCGTAGTCCTCGCAAGCAACATCACCGTCGAGCAGAGAATATTAAACCTCGAAGAAGAGTACACGTTGGTGGTGACGCCATCCATAGAGTTCATTCTACAGTTTGTGCCGAACGAAGATCAAGCAGAGTTCCCGAGTCGGTTGTGGGTGCGCAGCGTCGGCGGGGACACCTCTCGGCCGCTACTGCTCACCGCCAGAACTAAAACAGGAGCGACAACATGGCAGCTCCCGTACCAGTCCGGATCGATGCTGATGTCTGAGCTGGAGCGCACGCTGTGCTGGGATGGCTCCCCGACGGACGCGGTGGGGGCGCCGTCCGAGTGCGAGGGCGCGGGCTCGCAGCGCGGCTTCACCCTGCACCTCGCGTCCGCCTGCGCCGCGCCCCTCACCGTCACGCTGCGAGCCGCACCCGCCAGGGACTGGCTGCTCGGCTTCCAGGCCCGCACCACCGTCACCGCGACACAGACTGGTCCTGCGGTAAACTACTATGACTTCATTCCGGGACAGAACAGCGTCCGACTGATCGTGGAGTCGGAGGACGAGGTGTGCGCGACCATCTCCGTGCAGAGATACACGTGTCCGTTGGCGGAGACCATCGAGGACATCGACCTGACGACCCTCAGGATGACCGTCATGCGCTCCGGCGCCGTGCAGCTCTCTCGCAGCCTGTACCCGATGGGGTTCTACGTGGTGTCGCTGGTGCGGCCCGACGACGCGGCGTGCTCCGGCGAGCCGGCCCCCGAGGACGACTGGCTGCTGGAGGCCGCCCTCTGGGCCCACACTGACCGCCCCTCCCCCCCGGCCACTCTGCGGCAGAAGACCTTCACGCTGACCGTTAGGGCGTCGCTGTCCCGGGCGCAGTACATGGTGGGCGCGGGCGTGACGGTGGCGGTGTTCCTGCTGTTCTACGCGGGGTTCGCGGCGCTGGTGCTGGCGCAGCGCTGGCCCGCCTGCGCGCGGCTCACGGCGCCGCGGGCCGTGCTCGCCGACGCGCACAAGTCTGAGAGCGGAGCGTTGTCGGAAGGCGTCAGTGTGACCGGCGTGACTGCCGAGACCGGCGTGACGAGCGTGACCGGCGTGACGAGCGTGACCGGCGTGACGAGCGATGCGGGCACGCCCGTGCGGACCGCGCGGCGGCGGCGCGGCTCCGATGCAACATTTGACAGCAGTGATGCAAGTGATACAGATTCGGAGGAGGAGTCTCCTGCCGTCACAAACGACACGATCACAAACAATATGATCGCCAATCCCACCGCATCGTCCTCTGCCGCTAACCCCACTACGTCTCCCGGGACCCCCGGTAATCACGGAGCAGCCTCGCCCCCGGACCGAGCCAATGGAGCCGTCACGGAAGGCGACGCCATAGAACGGAGCACGGTACAGGAGGAAACGAGTCGTCCGTTCGGTCTGCCGGCGCGGCTGCACGTGGCGGCGCTGGCGCGGCGCGGGCGGCGCGTGCTGCGGGCGCGCTCGGACCGCTACCTGCACACGCTCTACACCGTGGCCGTGTTCTACGCACTGCCCGTGCTGCAGTTCGTCGCCGCCTTCCAGGTGATGCTGAACATATCGGGGTCGCTGGACATGTGCTACTACAACTTCCTGTGCGCGCACCCGGCGGGCGGGCTGTCCGACTTCAACCACGTGTTCTCGAACCTCGGCTACCTGCTGCTCGGCGCGCTCTTCATGCTGCAGCTGCAGCGCAGGAAGCGGAACAGGAAGCGGGCGCCACGACATGAGGAGTACGGTATCCCGGCGCACTACGGACTGCTGTCGTCCCTGGGCGCTGCCATGATGGTGGTGGCGCTGCTCTCCGCCAGCTACCACGTCTGTCCCAACAGCCTCAACTTCCAGTTCGACACGGCCTTCATGTACGTGCTGGCGGTGCTGTGCATGGTGAAGATCTACCAGTCGCGACACCCCGACATCAACGCGCGGGCGCACGCCACCTTCGGGGTGCTCGCCGTCTTCATCGCGCTCGTGGTGTGGGGCGTGCTGGGCGGGGGGCCGCTGTTCTGGAGCGTGTTCACTGTGCTGCATGTGTTCACGTTCCTGCTGCTGTCCCTGCGCATCTACTACGTCGGACAGTTTCGTCTCGGTAACGAGCTTGCTATTTTTAGAATGTACTTCTTAGGAATTGATTTCATATAA
Protein
MISWCALALCVSVVLASNITVEQRILNLEEEYTLVVTPSIEFILQFVPNEDQAEFPSRLWVRSVGGDTSRPLLLTARTKTGATTWQLPYQSGSMLMSELERTLCWDGSPTDAVGAPSECEGAGSQRGFTLHLASACAAPLTVTLRAAPARDWLLGFQARTTVTATQTGPAVNYYDFIPGQNSVRLIVESEDEVCATISVQRYTCPLAETIEDIDLTTLRMTVMRSGAVQLSRSLYPMGFYVVSLVRPDDAACSGEPAPEDDWLLEAALWAHTDRPSPPATLRQKTFTLTVRASLSRAQYMVGAGVTVAVFLLFYAGFAALVLAQRWPACARLTAPRAVLADAHKSESGALSEGVSVTGVTAETGVTSVTGVTSVTGVTSDAGTPVRTARRRRGSDATFDSSDASDTDSEEESPAVTNDTITNNMIANPTASSSAANPTTSPGTPGNHGAASPPDRANGAVTEGDAIERSTVQEETSRPFGLPARLHVAALARRGRRVLRARSDRYLHTLYTVAVFYALPVLQFVAAFQVMLNISGSLDMCYYNFLCAHPAGGLSDFNHVFSNLGYLLLGALFMLQLQRRKRNRKRAPRHEEYGIPAHYGLLSSLGAAMMVVALLSASYHVCPNSLNFQFDTAFMYVLAVLCMVKIYQSRHPDINARAHATFGVLAVFIALVVWGVLGGGPLFWSVFTVLHVFTFLLLSLRIYYVGQFRLGNELAIFRMYFLGIDFI
Summary
Uniprot
Pubmed
EMBL
PRIDE
Pfam
PF13965 SID-1_RNA_chan
Interpro
IPR025958
SID1_TM_fam
ProteinModelPortal
Ontologies
GO
PANTHER
Topology
SignalP
Position: 1 - 16,
Likelihood: 0.980410
Length:
726
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
150.61048
Exp number, first 60 AAs:
1.16073
Total prob of N-in:
0.06353
outside
1 - 300
TMhelix
301 - 323
inside
324 - 508
TMhelix
509 - 531
outside
532 - 550
TMhelix
551 - 573
inside
574 - 593
TMhelix
594 - 616
outside
617 - 630
TMhelix
631 - 648
inside
649 - 654
TMhelix
655 - 677
outside
678 - 681
TMhelix
682 - 704
inside
705 - 726
Population Genetic Test Statistics
Pi
1.165165
Theta
3.875263
Tajima's D
-1.94384
CLR
274.509674
CSRT
0.0134993250337483
Interpretation
Possibly Positive selection
