Gene

KWMTBOMO07550  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005864

Annotation

PREDICTED:_trafficking_protein_particle_complex_subunit_4_[Plutella_xylostella]

Location

Bomo_Chr12(-):17275127-17276636      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.058 PlasmaMembrane   Reliability : 1.745

CDS

ATGGTTATATACGGAATTTATATTGTTAGCAAGTCTGGTGGTCTCATCTACAACTACGATCACAATATTCCTCGAGTGGAGACTGAGAAAACGTTTGGATTTCCCCTTGATATTAAATTGCAGTATGAAAATAAAAAAGTTGTTGTGGCATTTGGCCAAAGAGATGGAATAAATGTTGGACATGTATTACTATCAGTAAATGGATCTCCAGTGACAGGAAGAACAACGGAAGACAATAGAGATGTCTTTGATATTATAGAAGCTAAGGAAAACTATCCTCTGAGTCTAAAATTTGGTAGAGTGAGAGCAACAACAAATGAGAAGATAGTGCTGGCCAGCATGTTCTATCCTCTTTTTGCCCTTGCTAGTCAGCTCAGTCCCATACCAAAATCCTCAGGAATAGAATCCTTAACGGCTGACACATTCAAGTTGTCGTGTTTTCAAACACTCACTGGTGTAAAATTTATAATAGTAACAGACACTAATATGCAAGGTACTGATGTGGTCCTAAAGAGGATCTATGAGTTATATTCAGACTATGCACTTAAGAATCCATTCTACTCACTCGAGATGCCAATAAGATGTGAACTGTTCGACACATCTCTACACACACTGCTGGAACTAGTTGAGAAGTCTGGGACTGCTAATTTATAA

Protein

MVIYGIYIVSKSGGLIYNYDHNIPRVETEKTFGFPLDIKLQYENKKVVVAFGQRDGINVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPLSLKFGRVRATTNEKIVLASMFYPLFALASQLSPIPKSSGIESLTADTFKLSCFQTLTGVKFIIVTDTNMQGTDVVLKRIYELYSDYALKNPFYSLEMPIRCELFDTSLHTLLELVEKSGTANL

Uniprot

H9J8M2   A0A1E1W2S6   A0A2H1WZY7   A0A2W1BX02   A0A2A4JJE4   A0A212F677   + More
A0A0N1IH47   S4P460   E3UPC9   A0A194PUA5   A0A2J7PK69   A0A0L7L5C2   A0A1Y1KRE6   A0A1W4X4U1   D2A131   A0A310SAE1   A0A0M9ACC3   A0A067R3S4   E2BWP0   E1ZZF1   A0A154PPB0   A0A026VYY9   A0A0L7QRY1   A0A087ZUZ4   A0A2A3E792   A0A232FG73   K7IR56   J3JVV9   A0A195ECF5   F4WNQ8   A0A195FVM0   A0A151IP55   Q7Q3Z0   A0A240PKQ6   A0A158NVP7   A0A1Y9HE26   A0A182GWG8   A0A084WGW4   A0A1L8DVQ4   A0A182Y069   A0A023EIU6   A0A240PMR3   A0A182WU42   A0A182L1H6   A0A182HUQ4   A0A2M3ZJV9   A0A0L0BUR8   A0A182UN56   A0A2M4BZ90   A0A1Y9H2Y4   A0A1Y9IW44   A0A1Y9G9G4   A0A2M4AQ60   A0A1Y9H9J4   A0A182UDH9   A0A2M4BZU3   W5JMH8   A0A182MIT9   A0A240PL21   A0A1I8N5Y8   U5EV61   A0A1B6D6Q7   A0A1Q3FDM4   A0A0K8TSD5   A0A1B6JFD7   B0X6Q2   A0A1B6FXS1   A0A1J1INN1   A0A1B6M0G6   A0A1I8QF50   A0A2S2Q9P7   B3N7D6   B4NXH0   B4HYQ3   B4Q786   E0VZF3   Q9VLI9   Q29JT8   B4N7T0   A0A0V0GAK5   A0A023EJV3   A0A1A9XEF1   A0A1B0AYT9   A0A3B0JL02   A0A1A9UYL4   A0A0P4VT81   T1HV27   A0A2S2PI94   G8JKE9   A0A069DQ86   B4JDZ6   B3MLY8   A0A2R7X2M3   B4LSE5   A0A2H8TPB8   A0A1W4W084   A0A0A1WTN3   A0A1B0DEK5   W8C8H1   A0A146KSS1  

Pubmed

19121390    28756777    22118469    26354079    23622113    26227816    + More
28004739    18362917    19820115    24845553    20798317    24508170    30249741    28648823    20075255    22516182    23537049    21719571    12364791    14747013    17210077    21347285    26483478    24438588    25244985    24945155    20966253    26108605    20920257    23761445    25315136    26369729    17994087    17550304    22936249    20566863    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    27129103    22679863    26334808    25830018    24495485    26823975   

EMBL

BABH01038639    GDQN01009800    JAT81254.1    ODYU01011928    SOQ57954.1    KZ149931    + More
PZC77340.1    NWSH01001319    PCG71714.1    AGBW02010072    OWR49237.1    KQ460642    KPJ13335.1    GAIX01006139    JAA86421.1    HM536613    ADO95152.1    KQ459592    KPI96902.1    NEVH01024940    PNF16731.1    JTDY01002923    KOB70489.1    GEZM01075758    GEZM01075757    GEZM01075756    JAV63972.1    KQ971338    EFA01590.1    KQ762207    OAD56031.1    KQ435701    KOX80373.1    KK852723    KDR17693.1    GL451165    EFN79895.1    GL435343    EFN73443.1    KQ435007    KZC13709.1    KK107558    QOIP01000012    EZA48987.1    RLU15976.1    KQ414766    KOC61383.1    KZ288345    PBC27633.1    NNAY01000242    OXU29766.1    APGK01018904    BT127377    KB740085    KB632303    AEE62339.1    ENN81539.1    ERL91805.1    KQ979074    KYN22791.1    GL888237    EGI64251.1    KQ981215    KYN44508.1    KQ976892    KYN07231.1    AAAB01008964    EAA12485.1    ADTU01002895    JXUM01093119    KQ564035    KXJ72894.1    ATLV01023763    KE525346    KFB49458.1    GFDF01003572    JAV10512.1    GAPW01004220    JAC09378.1    APCN01002471    GGFM01008060    MBW28811.1    JRES01001431    KNC22954.1    GGFJ01009258    MBW58399.1    GGFK01009578    MBW42899.1    AXCN02000765    GGFJ01009260    MBW58401.1    ADMH02000622    ETN65582.1    AXCM01005603    GANO01002022    JAB57849.1    GEDC01015930    JAS21368.1    GFDL01009392    JAV25653.1    GDAI01000336    JAI17267.1    GECU01009817    JAS97889.1    DS232421    EDS41535.1    GECZ01014779    JAS54990.1    CVRI01000054    CRL00702.1    GEBQ01010566    JAT29411.1    GGMS01005260    MBY74463.1    CH954177    EDV58287.1    CM000157    EDW88561.1    CH480818    EDW52183.1    CM000361    CM002910    EDX04280.1    KMY89134.1    DS235852    EEB18759.1    AE014134    BT120293    AAF52701.1    ADC41873.1    CH379062    EAL32873.1    CH964214    EDW80419.1    GECL01001231    JAP04893.1    GAPW01004236    JAC09362.1    JXJN01005947    OUUW01000006    SPP81493.1    GDKW01000781    JAI55814.1    ACPB03023272    ACPB03023273    GGMR01016540    MBY29159.1    JP593078    AER92463.1    GBGD01002854    JAC86035.1    CH916368    EDW03516.1    CH902620    EDV31816.1    KK856587    PTY26057.1    CH940649    EDW63753.1    GFXV01004191    MBW15996.1    GBXI01012442    JAD01850.1    AJVK01032881    GAMC01007466    JAB99089.1    GDHC01020382    JAP98246.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000235965    + More
UP000037510    UP000192223    UP000007266    UP000053105    UP000027135    UP000008237    UP000000311    UP000076502    UP000053097    UP000279307    UP000053825    UP000005203    UP000242457    UP000215335    UP000002358    UP000019118    UP000030742    UP000078492    UP000007755    UP000078541    UP000078542    UP000007062    UP000075881    UP000005205    UP000075900    UP000069940    UP000249989    UP000030765    UP000076408    UP000075880    UP000076407    UP000075882    UP000075840    UP000037069    UP000075903    UP000075884    UP000075920    UP000069272    UP000075886    UP000075902    UP000000673    UP000075883    UP000075885    UP000095301    UP000002320    UP000183832    UP000095300    UP000008711    UP000002282    UP000001292    UP000000304    UP000009046    UP000000803    UP000001819    UP000007798    UP000092443    UP000092460    UP000268350    UP000078200    UP000015103    UP000001070    UP000007801    UP000008792    UP000192221    UP000092462   

PRIDE

H9J8M2    Q9VLI9   

Pfam

PF04099   Sybindin

Interpro

IPR007233   TRAPPC        + More
IPR011012   Longin-like_dom_sf       
IPR036034   PDZ_sf       

SUPFAM

SSF64356   SSF64356        + More
SSF50156   SSF50156       

ProteinModelPortal

H9J8M2   A0A1E1W2S6   A0A2H1WZY7   A0A2W1BX02   A0A2A4JJE4   A0A212F677   + More
A0A0N1IH47   S4P460   E3UPC9   A0A194PUA5   A0A2J7PK69   A0A0L7L5C2   A0A1Y1KRE6   A0A1W4X4U1   D2A131   A0A310SAE1   A0A0M9ACC3   A0A067R3S4   E2BWP0   E1ZZF1   A0A154PPB0   A0A026VYY9   A0A0L7QRY1   A0A087ZUZ4   A0A2A3E792   A0A232FG73   K7IR56   J3JVV9   A0A195ECF5   F4WNQ8   A0A195FVM0   A0A151IP55   Q7Q3Z0   A0A240PKQ6   A0A158NVP7   A0A1Y9HE26   A0A182GWG8   A0A084WGW4   A0A1L8DVQ4   A0A182Y069   A0A023EIU6   A0A240PMR3   A0A182WU42   A0A182L1H6   A0A182HUQ4   A0A2M3ZJV9   A0A0L0BUR8   A0A182UN56   A0A2M4BZ90   A0A1Y9H2Y4   A0A1Y9IW44   A0A1Y9G9G4   A0A2M4AQ60   A0A1Y9H9J4   A0A182UDH9   A0A2M4BZU3   W5JMH8   A0A182MIT9   A0A240PL21   A0A1I8N5Y8   U5EV61   A0A1B6D6Q7   A0A1Q3FDM4   A0A0K8TSD5   A0A1B6JFD7   B0X6Q2   A0A1B6FXS1   A0A1J1INN1   A0A1B6M0G6   A0A1I8QF50   A0A2S2Q9P7   B3N7D6   B4NXH0   B4HYQ3   B4Q786   E0VZF3   Q9VLI9   Q29JT8   B4N7T0   A0A0V0GAK5   A0A023EJV3   A0A1A9XEF1   A0A1B0AYT9   A0A3B0JL02   A0A1A9UYL4   A0A0P4VT81   T1HV27   A0A2S2PI94   G8JKE9   A0A069DQ86   B4JDZ6   B3MLY8   A0A2R7X2M3   B4LSE5   A0A2H8TPB8   A0A1W4W084   A0A0A1WTN3   A0A1B0DEK5   W8C8H1   A0A146KSS1  

PDB

2J3T     E-value=9.73862e-73,     Score=692

KEGG

101737953    K20303 trafficking protein particle complex subunit 4 | (RefSeq) trafficking protein particle comple

GO

GO:0016192   GO:0030008   GO:0017112   GO:0005737   GO:0006888   GO:0005515   GO:0006810   GO:0004190   GO:0006508   GO:0015914   GO:0016021   GO:0016020   GO:0003707   GO:0051537  

PANTHER

PTHR23249  

Length:

217

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.86285

Exp number, first 60 AAs:

0.01638

Total prob of N-in:

0.09158

outside

1  -  217

 

 

Pi

17.028144

Theta

17.17568

Tajima's D

0.090352

CLR

0

CSRT

0.399830008499575

Interpretation

Uncertain