Gene

KWMTBOMO07547

Pre Gene Modal

BGIBMGA005841

Annotation

mitochondrial_ribosomal_protein_S21_[Bombyx_mori]

Location

Bomo_Chr12(+):17247297-17248309      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.464 Nuclear   Reliability : 1.99

CDS

ATGCATCTGTCGCTGCGCCTATTATCAAATAGACATCCTTCTTTCATAGCTCGCACAGTGTTTGTACAAAACAACGATATTGACAATGCGTGTAGGTTGATCAACAGGATTATGGGTAAAGAAGGTCTTTTAGCTCAATACAGGCTCACTAGATACTACGAGAAGCCGTTTCAGACTAGACGTCGAGTTAACCATGAAAAATGTAAGGCCATCTACAATGAAGATATGGAGAGAAAAATACAATTTGTATTAAGAAAAAATAGACATGAACCCTTTCCAGGATGTTACTGA

Protein

MHLSLRLLSNRHPSFIARTVFVQNNDIDNACRLINRIMGKEGLLAQYRLTRYYEKPFQTRRRVNHEKCKAIYNEDMERKIQFVLRKNRHEPFPGCY

Uniprot

Q1HQC0   A0A0L7L4R5   A0A2H1W5G7   A0A194PVW2   A0A2A4JJZ0   A0A0N0PC96   + More
A0A2W1BUN5   A0A3S2LVM8   A0A1B0DA25   D6WXD5   A0A1L8E1Q8   A0A0P4VSX7   R4FN47   A0A1B0CNH7   A0A182PFP5   A0A1W4V332   A0A182RIZ1   A0A182WYM8   A0A182QK34   A0A182UTR8   A0A182I540   Q7PVY0   N6TC39   U5EV91   A0A224XVN0   A0A0V0G8X2   A0A069DN44   A0A2R7WJU9   B3LX78   B4R1A0   B4HFT9   Q8I0J3   B4PQ07   B3P148   Q17JV7   A0A023EDU7   A0A182MTM0   A0A182YCI3   A0A2M4CSY7   A0A182JZK1   A0A2M3ZCN6   A0A2M4AXJ0   A0A2M4C5C6   A0A182F2G5   B4JI70   A0A0L0BYX9   A0A1Q3FG64   B0WWJ9   A0A1L8EEI1   A0A182NF21   A0A0K8TS99   A0A1I8MDY3   A0A182WH43   A0A182J4W2   A0A1B0FHM9   B4M6B6   A0A1A9ZT48   A0A2P8XJZ9   A0A1I8PTL3   A0A1D2MKB8   A0A2P8XK03   A0A1J1I205   A0A1A9UFL3   A0A3B0KMQ6   B5DXD2   B4G3S9   B4NKD1   A0A0M3QXN2   B4KA92   E9GJT5   A0A232F488   A0A151WRG2   A0A0J7K0Z8   F4WYA4   R4WIP4   A0A195FEP1   A0A026WSX9   A0A195CBA8   E1ZY11   A0A0P5ZIJ9   A0A0P6ADA7   A0A154NYB3   J9K4N0   A0A195EGK1   A0A0N8EKV4   A0A0L7R0S1   E2C7V4   A0A158NHT9   A0A2A3EI08   E9JB75   A0A0N1ITV4   Q4PM53   A0A0K8R7N1   T1IR17   A0A1S3CWR1   A0A195AX28   A0A131XMQ8   A0A023FW18   A0A1E1WYJ3  

Pubmed

26227816    26354079    28756777    18362917    19820115    27129103    + More
12364791    14747013    17210077    23537049    26334808    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    17510324    24945155    25244985    26108605    26369729    25315136    29403074    27289101    15632085    21292972    28648823    21719571    23691247    24508170    30249741    20798317    21347285    21282665    16431279    28049606    28503490   

EMBL

DQ443132    ABF51221.1    JTDY01002923    KOB70483.1    ODYU01006446    SOQ48298.1    + More
KQ459592    KPI96899.1    NWSH01001319    PCG71720.1    KQ460642    KPJ13332.1    KZ149931    PZC77344.1    RSAL01000164    RVE45324.1    AJVK01028747    KQ971361    EFA08827.1    GFDF01001639    JAV12445.1    GDKW01001516    JAI55079.1    ACPB03000766    GAHY01001454    JAA76056.1    AJWK01020328    AJWK01020329    AXCN02000831    APCN01003776    AAAB01008984    EAA14685.2    APGK01035610    KB740928    KB632064    ENN77869.1    ERL88485.1    GANO01001982    JAB57889.1    GFTR01001202    JAW15224.1    GECL01002391    JAP03733.1    GBGD01003634    JAC85255.1    KK854955    PTY19923.1    CH902617    EDV41678.2    CM000364    EDX13077.1    CH480815    EDW42324.1    AE014297    BT001577    AAN13563.1    AAN71332.1    AGB95917.1    CM000160    EDW97234.1    CH954181    EDV49237.1    CH477230    EAT46955.1    GAPW01006652    GEHC01000224    JAC06946.1    JAV47421.1    AXCM01002215    GGFL01004197    MBW68375.1    GGFM01005477    MBW26228.1    GGFK01012169    MBW45490.1    GGFJ01011210    MBW60351.1    CH916369    EDV92951.1    JRES01001133    KNC25257.1    GFDL01008553    JAV26492.1    DS234185    DS232149    EDS33136.1    EDS36091.1    GFDG01001790    JAV17009.1    GDAI01000585    JAI17018.1    CCAG010019923    CH940652    EDW59192.1    PYGN01001888    PSN32327.1    LJIJ01000997    ODM93420.1    PSN32325.1    CVRI01000038    CRK93794.1    OUUW01000013    SPP87869.1    CM000070    EDY67868.1    CH479179    EDW25034.1    CH964272    EDW84061.1    CP012526    ALC46223.1    CH933806    EDW14579.1    GL732548    EFX80261.1    NNAY01001011    OXU25495.1    KQ982813    KYQ50265.1    LBMM01017706    KMQ83992.1    GL888439    EGI60861.1    AK417325    BAN20540.1    KQ981636    KYN38846.1    KK107109    QOIP01000008    EZA59155.1    RLU19653.1    KQ978023    KYM98087.1    GL435164    EFN73930.1    GDIP01043065    JAM60650.1    GDIP01031237    JAM72478.1    KQ434782    KZC04659.1    ABLF02027792    ABLF02027799    KQ978957    KYN27276.1    GDIQ01016836    JAN77901.1    KQ414669    KOC64455.1    GL453466    EFN75989.1    ADTU01016038    KZ288234    PBC31423.1    GL770938    EFZ09921.1    KQ435732    KOX77532.1    ABJB010288312    DQ066274    DS730855    AAY66911.1    EEC06984.1    GADI01007309    GEFM01001812    JAA66499.1    JAP73984.1    JH431327    KQ976725    KYM76602.1    GEFH01001173    JAP67408.1    GBBL01002410    JAC24910.1    GFAC01007113    JAT92075.1   

Proteomes

UP000037510    UP000053268    UP000218220    UP000053240    UP000283053    UP000092462    + More
UP000007266    UP000015103    UP000092461    UP000075885    UP000192221    UP000075900    UP000076407    UP000075886    UP000075903    UP000075840    UP000007062    UP000019118    UP000030742    UP000007801    UP000000304    UP000001292    UP000000803    UP000002282    UP000008711    UP000008820    UP000075883    UP000076408    UP000075881    UP000069272    UP000001070    UP000037069    UP000002320    UP000075884    UP000095301    UP000075920    UP000075880    UP000092444    UP000008792    UP000092445    UP000245037    UP000095300    UP000094527    UP000183832    UP000078200    UP000268350    UP000001819    UP000008744    UP000007798    UP000092553    UP000009192    UP000000305    UP000215335    UP000075809    UP000036403    UP000007755    UP000078541    UP000053097    UP000279307    UP000078542    UP000000311    UP000076502    UP000007819    UP000078492    UP000053825    UP000008237    UP000005205    UP000242457    UP000053105    UP000001555    UP000079169    UP000078540   

PRIDE

Q1HQC0    Q8I0J3   

Pfam

PF01165   Ribosomal_S21

Interpro

IPR001911   Ribosomal_S21       

ProteinModelPortal

Q1HQC0   A0A0L7L4R5   A0A2H1W5G7   A0A194PVW2   A0A2A4JJZ0   A0A0N0PC96   + More
A0A2W1BUN5   A0A3S2LVM8   A0A1B0DA25   D6WXD5   A0A1L8E1Q8   A0A0P4VSX7   R4FN47   A0A1B0CNH7   A0A182PFP5   A0A1W4V332   A0A182RIZ1   A0A182WYM8   A0A182QK34   A0A182UTR8   A0A182I540   Q7PVY0   N6TC39   U5EV91   A0A224XVN0   A0A0V0G8X2   A0A069DN44   A0A2R7WJU9   B3LX78   B4R1A0   B4HFT9   Q8I0J3   B4PQ07   B3P148   Q17JV7   A0A023EDU7   A0A182MTM0   A0A182YCI3   A0A2M4CSY7   A0A182JZK1   A0A2M3ZCN6   A0A2M4AXJ0   A0A2M4C5C6   A0A182F2G5   B4JI70   A0A0L0BYX9   A0A1Q3FG64   B0WWJ9   A0A1L8EEI1   A0A182NF21   A0A0K8TS99   A0A1I8MDY3   A0A182WH43   A0A182J4W2   A0A1B0FHM9   B4M6B6   A0A1A9ZT48   A0A2P8XJZ9   A0A1I8PTL3   A0A1D2MKB8   A0A2P8XK03   A0A1J1I205   A0A1A9UFL3   A0A3B0KMQ6   B5DXD2   B4G3S9   B4NKD1   A0A0M3QXN2   B4KA92   E9GJT5   A0A232F488   A0A151WRG2   A0A0J7K0Z8   F4WYA4   R4WIP4   A0A195FEP1   A0A026WSX9   A0A195CBA8   E1ZY11   A0A0P5ZIJ9   A0A0P6ADA7   A0A154NYB3   J9K4N0   A0A195EGK1   A0A0N8EKV4   A0A0L7R0S1   E2C7V4   A0A158NHT9   A0A2A3EI08   E9JB75   A0A0N1ITV4   Q4PM53   A0A0K8R7N1   T1IR17   A0A1S3CWR1   A0A195AX28   A0A131XMQ8   A0A023FW18   A0A1E1WYJ3  

PDB

3J9M     E-value=7.45081e-16,     Score=198

KEGG

732874    K02970 small subunit ribosomal protein S21 | (RefSeq) mRpS21; mitochondrial ribosomal protein S21

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0032543   GO:0005763   GO:0004190   GO:0006508   GO:0015914   GO:0016021   GO:0016020   GO:0003707   GO:0051537  

PANTHER

PTHR21109  

Length:

96

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000440000000000001

Exp number, first 60 AAs:

0.000440000000000001

Total prob of N-in:

0.07258

outside

1  -  96

 

 

Pi

15.717871

Theta

18.753176

Tajima's D

-0.462441

CLR

1.952356

CSRT

0.249387530623469

Interpretation

Uncertain