Gene

KWMTBOMO07546

Pre Gene Modal

BGIBMGA005866

Annotation

hypothetical_protein_KGM_16083_[Danaus_plexippus]

Location

Bomo_Chr12(-):17237188-17241906      View in EpiBrowser

Full name

WD repeat-containing protein on Y chromosome      

Location in the cell

Extracellular   Reliability : 1.477 PlasmaMembrane   Reliability : 1.447

CDS

ATGTACTACCACTTCCACAAGGATATAAACGAGAAGTGCCTCCTGATCTGTGGCGACGTGGGCGGCAACGTCCGAGTGCTGATGTTTTCACCGATCAAACGCGGACCGTTCCAGAACCAGCCGGGGAAGGCGCTCATACAGCTCCGACATGTAGATTTGCAGCGTAAGCCTCAACTGCTGCCAGCAATGCAGCTAGTGGAACTGACCAGGGTTCACAGCGATTGGGTTCGTCAAGTGTCGTACTACGAGTCCTTGCACTGTGTGGTGTCGTGCTCCACGTGTGTCGACTCCTTACTCATGTGTGACATCGCTGGCTCTAAAACTCATAACATGTTTAAAGTTGAAAAGGGCATTCAATGCTTCGCGTTCGACGAAGCCGCTCATGTACTGGTAACGGGTGGTCCGGATTGTGCAGTTCGAGTGTGGAATCCTTTCGTTCCCAGTAAATGTAATGCAATTCTGTTGGGCCACCACGCCGCCGTCACCAACATCGTGCTGCAGAACAACGGTCAAACCGTCTACTCCCTCTCCAGAGACAGAATTATCAAAGTCTGGGATGTACACGGACAAGTCTGCATACAAACGTACATCGACGTGCCAGCACAAGTGGGCGAGCGCACGCCCATCACGGCGGTGTACAACCCGGTCAGCCGCGAGTACATCCTCGCAGCCATGAAGGTGGCCGTGCTCGTGCTGGACGAGCAGCTCAACCCGGCGCACACCGACGGCTTCACGCACTCGAGGGCCGTGGCCGAGGTGCTGTACAACCCGCTCTTCAAGGTCATCATCACTTGTGGAATGGACAGCATTATTATCAACTGGGATCCAGCGACGGGAAAGCGAAACACTCTGATCCGGGATGCTCACACCCGTCTGCTCCATGGAGAGTTGATTCCAGTGGAAATCACTGCAGCATGCTTCGACCCTGGATACCAACTCCTATTGACGGGAGCCAGAAATGGGTCGCTCAAGGTGTGGAACTTCAACACTGGAATATGTTTGAGGACCATGAGTATCGAACATATGTGCGAAGTGACCAGCTGCTTTTGGGTTGAAGGAAGGATCTTGGCAGTGGGCTGGAATCGTCACGTGACAGAGTTCGAAGAGACTGGCACCGGCAGCACCGGCAAGAGTTGGGAAACGCGGCACAGCGACGACGTGTTGGCTGCTGCAGCTCGACCTCCCCTGGCGCTTGCTACTGCTTCCTACAACTCTGAACTATTGCTGTGGAAGCTGGAGACTGGACAGCCCTATCGGTGA

Protein

MYYHFHKDINEKCLLICGDVGGNVRVLMFSPIKRGPFQNQPGKALIQLRHVDLQRKPQLLPAMQLVELTRVHSDWVRQVSYYESLHCVVSCSTCVDSLLMCDIAGSKTHNMFKVEKGIQCFAFDEAAHVLVTGGPDCAVRVWNPFVPSKCNAILLGHHAAVTNIVLQNNGQTVYSLSRDRIIKVWDVHGQVCIQTYIDVPAQVGERTPITAVYNPVSREYILAAMKVAVLVLDEQLNPAHTDGFTHSRAVAEVLYNPLFKVIITCGMDSIIINWDPATGKRNTLIRDAHTRLLHGELIPVEITAACFDPGYQLLLTGARNGSLKVWNFNTGICLRTMSIEHMCEVTSCFWVEGRILAVGWNRHVTEFEETGTGSTGKSWETRHSDDVLAAAARPPLALATASYNSELLLWKLETGQPYR

Miscellaneous

Chromosome mapping suggests that WDY is fully contained in the kl-1 region, and WDY may correspond to this fertility factor.

Keywords

Complete proteome   Reference proteome   Repeat   WD repeat   Alternative splicing  

Feature

chain  WD repeat-containing protein on Y chromosome
splice variant  In isoform A.

Uniprot

H9J8M4   A0A3S2LF23   A0A2W1BX12   A0A2A4JIW6   A0A2H1W5I6   A0A212F674   + More
A0A2W1BXF1   A0A2A4JJ24   A0A194PV83   A0A2W1BQQ8   A0A2A4JIS4   A0A2A4JI31   A0A0N1IP31   A0A2W1BUK5   A0A0L7KR52   N6UBT5   U4U073   A0A1W4XAX5   A0A0L7R624   A0A154PQ19   D6X348   A0A2A3EG56   A0A088A2J8   A0A0M9A389   A0A158NWD3   E2BZS4   A0A2P8Z6D4   E0VHB7   A0A151HZ21   A0A1A9XFQ0   A0A1A9WKU7   A0A1I8MCB5   A0A195CPR5   A0A0K8ULE2   A0A195DV77   A0A034VG39   A0A1B0B7R6   A0A1A9ZDE8   A0A1A9UQ02   A0A1B0G280   A0A2K7P688   A0A1A9ZDF7   A0A1S4JXI3   B7FF11   A0A1B0FDX8   A0A1A9XFP5   Q17I16   A0A1A9UQ01   A0A182GPN7   B7FF09-2   B7FF09   A0A0S0X2Z2   B4F7L9   B7FF08   B0WYR6   A0A182GDJ5   F2YAQ5   B7FF07   A0A3B0JM86   B7FF06   B0FXQ5   B7FF10   B5DHW4   B4GQJ7   A0A182QKI2   A0A182JZB3   A0A182XVF2   B7FF12   A0A182XM01   A0A0K8SYL8   A0A0A9VZG5   A0A182HTG7   A0A182PEL3   Q5TTP0   A0A182LFN5   A0A182TJF4   A0A182SDI7   A0A1A9ZDF8   A0A182LRL8   A0A0A9WKF2   A0A1I8JUG3   A0A182NGA0   A0A182IMV4   A0A1I8PB43   A0A182VIL6   A0A1A9XFP6   A0A1I8PB56   A0A182W2M9   A0A0M4EQS8   A0A182FQ10   A0A0Q5VNM6   A0A1I8PAZ6   A0A1B0BV59   A0A1A9WKU8   A0A084VCD3   A0A1B0G315   A0A1A9WKU6  

Pubmed

19121390    28756777    22118469    26354079    26227816    23537049    + More
18362917    19820115    21347285    20798317    29403074    20566863    25315136    25348373    19011613    17510324    26483478    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    18660539    15632085    25244985    25401762    12364791    20966253    24438588   

EMBL

BABH01038649    RSAL01000164    RVE45325.1    KZ149931    PZC77350.1    NWSH01001319    + More
PCG71716.1    ODYU01006446    SOQ48297.1    AGBW02010072    OWR49233.1    PZC77346.1    PCG71718.1    KQ459592    KPI96898.1    PZC77348.1    PCG71719.1    PCG71717.1    KQ460642    KPJ13331.1    PZC77345.1    JTDY01006712    KOB65753.1    APGK01029436    KB740735    KB631342    ENN79120.1    ERL84246.1    KB630967    ERL83971.1    KQ414648    KOC66274.1    KQ435030    KZC13993.1    KQ971372    EFA09801.1    KZ288260    PBC30464.1    KQ435750    KOX76380.1    ADTU01027884    ADTU01027885    GL451666    EFN78803.1    PYGN01000174    PSN52065.1    DS235165    EEB12773.1    KQ976707    KYM77069.1    KQ977444    KYN02701.1    GDHF01025001    JAI27313.1    KQ980322    KYN16647.1    GAKP01017870    JAC41082.1    JXJN01009710    JXJN01009711    CCAG010001455    BK006448    DAA06445.1    CCAG010021136    CH477243    EAT46343.1    JXUM01015358    KQ560428    KXJ82459.1    CH964182    BK006446    DAA06443.1    EDW80241.1    CP007106    ALI51676.1    DS483672    BT021451    BK006449    AAX33599.1    DAA06296.1    CH940649    BK006445    DAA06442.1    EDW64164.1    DS232197    EDS37176.1    JXUM01056066    KQ561895    KXJ77233.1    HQ852741    ADZ32503.1    CH933807    BK006444    DAA06441.1    EDW11275.1    OUUW01000006    SPP81442.1    CH916368    BK006443    DAA06440.1    EDW04032.1    EU362855    AAPP01000240    AAPP01011194    AAPP01017377    AAPP01018149    ABY59794.1    BK006447    DAA06444.1    CH379059    EDY69891.1    CH479187    EDW39869.1    AXCN02001627    BK006450    AAEU02004787    AAEU02008933    AAEU02010905    EU362856    DAA06446.1    GBRD01007555    JAG58266.1    GBHO01044036    JAF99567.1    APCN01000528    AAAB01008859    AXCM01000235    GBHO01035708    JAG07896.1    CP012523    ALC39412.1    CH954188    KQS58178.1    JXJN01021143    ATLV01010661    KE524596    KFB35627.1    CCAG010021047   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053268    UP000053240    + More
UP000037510    UP000019118    UP000030742    UP000192223    UP000053825    UP000076502    UP000007266    UP000242457    UP000005203    UP000053105    UP000005205    UP000008237    UP000245037    UP000009046    UP000078540    UP000092443    UP000091820    UP000095301    UP000078542    UP000078492    UP000092460    UP000092445    UP000078200    UP000092444    UP000008820    UP000069940    UP000249989    UP000007798    UP000000803    UP000008792    UP000002320    UP000009192    UP000268350    UP000001070    UP000007801    UP000001819    UP000008744    UP000075886    UP000075881    UP000076408    UP000002282    UP000076407    UP000075840    UP000075885    UP000007062    UP000075882    UP000075902    UP000075901    UP000075883    UP000075900    UP000075884    UP000075880    UP000095300    UP000075903    UP000075920    UP000092553    UP000069272    UP000008711    UP000030765   

PRIDE

H9J8M4    B7FF09    B4F7L9    B0WYR6    B7FF07    B7FF06    + More
B0FXQ5    B5DHW4    B4GQJ7    Q5TTP0   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40
PF13833   EF-hand_8

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR011044   Quino_amine_DH_bsu       
IPR020472   G-protein_beta_WD-40_rep       
IPR024977   Apc4_WD40_dom       
IPR023106   Ribosomal_L30_central_dom_arc       
IPR005998   Ribosomal_L7_euk       
IPR035808   Ribosomal_L7_euk_arc       
IPR036919   L30_ferredoxin-like_sf       
IPR011041   Quinoprot_gluc/sorb_DH       

SUPFAM

SSF50978   SSF50978        + More
SSF47473   SSF47473       
SSF50998   SSF50998       
SSF50969   SSF50969       
SSF55129   SSF55129       
SSF50952   SSF50952       

Gene 3D

2.130.10.10     1.10.15.30     3.30.1390.20    

CDD

cd01657  Ribosomal_L7_archeal_euk

ProteinModelPortal

H9J8M4   A0A3S2LF23   A0A2W1BX12   A0A2A4JIW6   A0A2H1W5I6   A0A212F674   + More
A0A2W1BXF1   A0A2A4JJ24   A0A194PV83   A0A2W1BQQ8   A0A2A4JIS4   A0A2A4JI31   A0A0N1IP31   A0A2W1BUK5   A0A0L7KR52   N6UBT5   U4U073   A0A1W4XAX5   A0A0L7R624   A0A154PQ19   D6X348   A0A2A3EG56   A0A088A2J8   A0A0M9A389   A0A158NWD3   E2BZS4   A0A2P8Z6D4   E0VHB7   A0A151HZ21   A0A1A9XFQ0   A0A1A9WKU7   A0A1I8MCB5   A0A195CPR5   A0A0K8ULE2   A0A195DV77   A0A034VG39   A0A1B0B7R6   A0A1A9ZDE8   A0A1A9UQ02   A0A1B0G280   A0A2K7P688   A0A1A9ZDF7   A0A1S4JXI3   B7FF11   A0A1B0FDX8   A0A1A9XFP5   Q17I16   A0A1A9UQ01   A0A182GPN7   B7FF09-2   B7FF09   A0A0S0X2Z2   B4F7L9   B7FF08   B0WYR6   A0A182GDJ5   F2YAQ5   B7FF07   A0A3B0JM86   B7FF06   B0FXQ5   B7FF10   B5DHW4   B4GQJ7   A0A182QKI2   A0A182JZB3   A0A182XVF2   B7FF12   A0A182XM01   A0A0K8SYL8   A0A0A9VZG5   A0A182HTG7   A0A182PEL3   Q5TTP0   A0A182LFN5   A0A182TJF4   A0A182SDI7   A0A1A9ZDF8   A0A182LRL8   A0A0A9WKF2   A0A1I8JUG3   A0A182NGA0   A0A182IMV4   A0A1I8PB43   A0A182VIL6   A0A1A9XFP6   A0A1I8PB56   A0A182W2M9   A0A0M4EQS8   A0A182FQ10   A0A0Q5VNM6   A0A1I8PAZ6   A0A1B0BV59   A0A1A9WKU8   A0A084VCD3   A0A1B0G315   A0A1A9WKU6  

PDB

5NNZ     E-value=1.29785e-12,     Score=177

KEGG

101738087    no KO assigned | (RefSeq) WD repeat-containing protein on Y chromosome-like

GO

GO:0005509   GO:0003824   GO:0005515   GO:0006260   GO:0015074   GO:0004190   GO:0006508   GO:0015914   GO:0016021   GO:0016020   GO:0003707   GO:0051537  

Length:

419

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.23595

Exp number, first 60 AAs:

0.18019

Total prob of N-in:

0.02644

outside

1  -  419

 

 

Pi

21.585281

Theta

19.454891

Tajima's D

0.514072

CLR

0.506953

CSRT

0.527823608819559

Interpretation

Uncertain