Gene

KWMTBOMO07545

Pre Gene Modal

BGIBMGA005867

Annotation

hypothetical_protein_KGM_16085_[Danaus_plexippus]

Location

Bomo_Chr12(-):17230787-17233606      View in EpiBrowser

Full name

WD repeat-containing protein on Y chromosome      

Location in the cell

Mitochondrial   Reliability : 1.348 Nuclear   Reliability : 1.92

CDS

ATGCTCTCTCTGGAGAACGGTCAGGTCCAAGGTTGGTCGGATCATTCAGCCGGCGGATACCAAGGCTCGTTCCAGGCCATTCACACGGCTGGAGACTATGTGTCGGCATTCGCTACCGACACGAACAATGACTATCTCTTCACCGGTACCACAATCGGGTATATCAAGGTTTGGCTCATGAGAAACTATCTGCGGAACGAAGAGGTCCACATCTGTATGCCGAAGCTACGTTTAGAGTTTCCGTTTCTATGGCGGGACCGGCTGGAGGGCCGCGCCAAGCGCTGCGTCCGCCAGCAGCCGCTCCCGCTGTTGCTCAACAGCTACCGCGCACACCTGCGCTGCGTCACGACCCTCGCTTATGTCGACGAACTCAAACTGTTGTTCAGCGGTAGCTCGGACTACAGCGTGCGAGTGTGGCGCCTGTCCGGTGAATACTTGCACACGCTGGGCAGCTTCTTGCCCTGGAGTCTCGACCTTACAAGGTTCCCGCCTGACGTCAAGAAAGTTGCGAGTTTTACGACTTTTAAGGTGTGGCGCGGGGGCTACGTCTCCCGCTACGTGCCGGGGCAGGTGGAGGAGGACAAGCTGCGCGACATCACCGAGCAGGAGCTGTGCCGGACGTACGGAGCCCCGCCCTCCGAGCCGCTACTCGGAAACTACTTCCACCTACCCTCGAGACCAGATCGGCAGGATCCTATTGTTCTCGATGACTCCCTGCCAACTATCCCGGTGTACAGCGCGCTGCGCATGGCGTCTAGCCAGCCCGTGCGGCGCGCCCGCACGCCGCCGCTCGTGCAGGCCCGGCGCACGCGGCTCCTCGGCACGCGTCGCACGCACTTCCAGCACGACCCACACCAACATTGA

Protein

MLSLENGQVQGWSDHSAGGYQGSFQAIHTAGDYVSAFATDTNNDYLFTGTTIGYIKVWLMRNYLRNEEVHICMPKLRLEFPFLWRDRLEGRAKRCVRQQPLPLLLNSYRAHLRCVTTLAYVDELKLLFSGSSDYSVRVWRLSGEYLHTLGSFLPWSLDLTRFPPDVKKVASFTTFKVWRGGYVSRYVPGQVEEDKLRDITEQELCRTYGAPPSEPLLGNYFHLPSRPDRQDPIVLDDSLPTIPVYSALRMASSQPVRRARTPPLVQARRTRLLGTRRTHFQHDPHQH

Miscellaneous

Chromosome mapping suggests that WDY is fully contained in the kl-1 region, and WDY may correspond to this fertility factor.

Keywords

Complete proteome   Reference proteome   Repeat   WD repeat   Alternative splicing  

Feature

chain  WD repeat-containing protein on Y chromosome
splice variant  In isoform A.

Uniprot

H9J8M5   A0A2A4JIW6   A0A2A4JIS4   A0A2A4JJ24   A0A3S2LF23   A0A212F674   + More
A0A2W1BX12   A0A2W1BUK5   A0A2H1W5I6   A0A0N1IP31   A0A2A4JI31   A0A194PV83   A0A2W1BQQ8   D6X348   A0A1W4XAX5   B0FXQ5   W8C0I3   B7FF09   A0A1A9ZDF7   A0A034VG39   A0A0K8ULE2   B7FF12   A0A1A9XFP5   A0A1B0FDX8   A0A0S0X2Z2   B4F7L9   E0VHB7   A0A1I8PAZ6   A0A1I8PB56   A0A3B0JM86   A0A0L7R624   E2BZS4   B7FF10   B4GQJ7   B7FF07   B5DHW4   A0A1A9UQ01   A0A1I8MCB5   A0A151HZ21   A0A2A3EG56   B7FF06   A0A088A2J8   B7FF08   A0A0M9A389   A0A182TJF4   A0A1A9ZDE8   A0A1B0BV59   A0A1A9UQ02   A0A1B0G280   A0A182VIL6   A0A1B0B7R6   A0A182LFN5   A0A195DV77   A0A182SDI7   A0A158NWD3   Q5TTP0   A0A1I8JUG3   A0A1A9XFQ0   A0A195CPR5   A0A182W2M9   A0A182JZB3   A0A182XVF2   A0A1A9XFP6   A0A1A9WKU6   A0A182HTG7   A0A182GPN7   A0A182XM01   A0A2K7P688   A0A182GDJ5   Q17I16   N6UET6   B0WYR6   F2YAQ5   A0A182NGA0   A0A084VCD3   A0A0R1EFR7   A0A182FQ10   A0A0M4EAI9   A0A0V0G5H3   A0A1A9ZDF8   A0A1S3JN57   A0A026WT82   W4YPZ7  

Pubmed

19121390    22118469    28756777    26354079    18362917    19820115    + More
19011613    17994087    24495485    25348373    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    18660539    20566863    20798317    15632085    25315136    20966253    21347285    12364791    25244985    26483478    17510324    23537049    24438588    17550304    24508170   

EMBL

BABH01038649    BABH01038650    NWSH01001319    PCG71716.1    PCG71719.1    PCG71718.1    + More
RSAL01000164    RVE45325.1    AGBW02010072    OWR49233.1    KZ149931    PZC77350.1    PZC77345.1    ODYU01006446    SOQ48297.1    KQ460642    KPJ13331.1    PCG71717.1    KQ459592    KPI96898.1    PZC77348.1    KQ971372    EFA09801.1    EU362855    AAPP01000240    AAPP01011194    AAPP01017377    AAPP01018149    ABY59794.1    GAMC01004002    JAC02554.1    CH964182    BK006446    DAA06443.1    EDW80241.1    GAKP01017870    JAC41082.1    GDHF01025001    JAI27313.1    BK006450    AAEU02004787    AAEU02008933    AAEU02010905    EU362856    DAA06446.1    CCAG010021136    CP007106    ALI51676.1    DS483672    BT021451    BK006449    AAX33599.1    DAA06296.1    DS235165    EEB12773.1    OUUW01000006    SPP81442.1    KQ414648    KOC66274.1    GL451666    EFN78803.1    BK006447    DAA06444.1    CH479187    EDW39869.1    CH933807    BK006444    DAA06441.1    EDW11275.1    CH379059    EDY69891.1    KQ976707    KYM77069.1    KZ288260    PBC30464.1    CH916368    BK006443    DAA06440.1    EDW04032.1    CH940649    BK006445    DAA06442.1    EDW64164.1    KQ435750    KOX76380.1    JXJN01021143    CCAG010001455    JXJN01009710    JXJN01009711    KQ980322    KYN16647.1    ADTU01027884    ADTU01027885    AAAB01008859    KQ977444    KYN02701.1    APCN01000528    JXUM01015358    KQ560428    KXJ82459.1    JXUM01056066    KQ561895    KXJ77233.1    CH477243    EAT46343.1    APGK01029437    KB740735    ENN79121.1    DS232197    EDS37176.1    HQ852741    ADZ32503.1    ATLV01010661    KE524596    KFB35627.1    CH894615    KRK05591.1    CP012523    ALC39414.1    GECL01003188    JAP02936.1    KK107111    EZA58881.1    AAGJ04079049   

Proteomes

UP000005204    UP000218220    UP000283053    UP000007151    UP000053240    UP000053268    + More
UP000007266    UP000192223    UP000007801    UP000007798    UP000092445    UP000002282    UP000092443    UP000092444    UP000000803    UP000009046    UP000095300    UP000268350    UP000053825    UP000008237    UP000008744    UP000009192    UP000001819    UP000078200    UP000095301    UP000078540    UP000242457    UP000001070    UP000005203    UP000008792    UP000053105    UP000075902    UP000092460    UP000075903    UP000075882    UP000078492    UP000075901    UP000005205    UP000007062    UP000075900    UP000078542    UP000075920    UP000075881    UP000076408    UP000091820    UP000075840    UP000069940    UP000249989    UP000076407    UP000008820    UP000019118    UP000002320    UP000075884    UP000030765    UP000069272    UP000092553    UP000085678    UP000053097    UP000007110   

PRIDE

H9J8M5    B0FXQ5    B7FF09    B4F7L9    B4GQJ7    B7FF07    + More
B5DHW4    B7FF06    Q5TTP0    B0WYR6   

Pfam

PF00400   WD40        + More
PF13833   EF-hand_8
PF12894   ANAPC4_WD40
PF13499   EF-hand_7

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR019775   WD40_repeat_CS       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       
IPR011044   Quino_amine_DH_bsu       
IPR020472   G-protein_beta_WD-40_rep       
IPR023106   Ribosomal_L30_central_dom_arc       
IPR005998   Ribosomal_L7_euk       
IPR035808   Ribosomal_L7_euk_arc       
IPR036919   L30_ferredoxin-like_sf       
IPR024977   Apc4_WD40_dom       
IPR011041   Quinoprot_gluc/sorb_DH       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF50978   SSF50978        + More
SSF47473   SSF47473       
SSF50998   SSF50998       
SSF50969   SSF50969       
SSF55129   SSF55129       
SSF50952   SSF50952       

Gene 3D

2.130.10.10     1.10.15.30     3.30.1390.20    

CDD

cd01657  Ribosomal_L7_archeal_euk
cd00051  EFh

ProteinModelPortal

H9J8M5   A0A2A4JIW6   A0A2A4JIS4   A0A2A4JJ24   A0A3S2LF23   A0A212F674   + More
A0A2W1BX12   A0A2W1BUK5   A0A2H1W5I6   A0A0N1IP31   A0A2A4JI31   A0A194PV83   A0A2W1BQQ8   D6X348   A0A1W4XAX5   B0FXQ5   W8C0I3   B7FF09   A0A1A9ZDF7   A0A034VG39   A0A0K8ULE2   B7FF12   A0A1A9XFP5   A0A1B0FDX8   A0A0S0X2Z2   B4F7L9   E0VHB7   A0A1I8PAZ6   A0A1I8PB56   A0A3B0JM86   A0A0L7R624   E2BZS4   B7FF10   B4GQJ7   B7FF07   B5DHW4   A0A1A9UQ01   A0A1I8MCB5   A0A151HZ21   A0A2A3EG56   B7FF06   A0A088A2J8   B7FF08   A0A0M9A389   A0A182TJF4   A0A1A9ZDE8   A0A1B0BV59   A0A1A9UQ02   A0A1B0G280   A0A182VIL6   A0A1B0B7R6   A0A182LFN5   A0A195DV77   A0A182SDI7   A0A158NWD3   Q5TTP0   A0A1I8JUG3   A0A1A9XFQ0   A0A195CPR5   A0A182W2M9   A0A182JZB3   A0A182XVF2   A0A1A9XFP6   A0A1A9WKU6   A0A182HTG7   A0A182GPN7   A0A182XM01   A0A2K7P688   A0A182GDJ5   Q17I16   N6UET6   B0WYR6   F2YAQ5   A0A182NGA0   A0A084VCD3   A0A0R1EFR7   A0A182FQ10   A0A0M4EAI9   A0A0V0G5H3   A0A1A9ZDF8   A0A1S3JN57   A0A026WT82   W4YPZ7  

PDB

5OPT     E-value=0.0264531,     Score=86

KEGG

101738087    no KO assigned | (RefSeq) WD repeat-containing protein on Y chromosome-like

GO

GO:0005509   GO:0003824   GO:0043161   GO:0080008   GO:0005515   GO:0006260   GO:0015074   GO:0004190   GO:0006508   GO:0015914   GO:0016021   GO:0016020   GO:0003707   GO:0051537  

Length:

287

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0877700000000002

Exp number, first 60 AAs:

0.07454

Total prob of N-in:

0.01425

outside

1  -  287

 

 

Pi

13.935142

Theta

13.49539

Tajima's D

0.10706

CLR

0.601672

CSRT

0.404929753512324

Interpretation

Uncertain