Pre Gene Modal
BGIBMGA005838
Annotation
PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_1_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear Reliability : 3.833
Sequence
CDS
ATGGGTTCAAAAAAGCATAAGAAAGAAGCAAAGAAAAAGAAGCATAAGAGTAGGTCCCGTTCGCCACTCGAAGGTGAAGAACGTGAACGAAAAAGGCATAGGAAACATAAAGATCGCAAGCGAGAGCGCTCCCCTGACGTTCAAGAAGTGCCTGTCGACTCGCATCAGCTGAAGGATGACGAGACTAACCATTCTCGAGGAGACAGTGAAGATCGGGATCGCCGCATGCGTGCTTTGCATCGGCCAGAGAAAAATGAATCTGAAGGGGACAAGAGTGTTGAGTATGAACGTGAGAAAACCAAGTCTCCAGTACAAACACAGAGTGGTGGAGCACAAGAGAGCTTGTCCATTGAAGAGACCAATCGTCTACGAGCTAAACTTGGACTTAAACCACTTGAAGTCAATGAGAAACCTGCTGATGATGGTAAATTCAAAGATGACCTTGGCGAGTTCTACCATAAGCCGGCTACTAATATCACTGAACAGAAGAAAACAGAAAAACTCAAAGAGAAAATAAAAGAGCGAAAGGAGAAGAGGAATATTGAAGAGAAATTACAGACTACCCTACTCGGTGAAGGGTCTGACGATGATGACGCGTCGGCCTGGGTGAAGCGCTCCAGAGCAATAGAGACGCAGAAGAAAGAAGCTGCAAAAAGGGCGGCCATGCTGGACGAGATGGACGCGGCGTTCGGCGTGTCCGCCCTGCTGCCCCCCCGCGCGCCCCCCGCGCCCGCCCCCTACCGCGCGCCCAGCCTGCGGGGGCTGCGGGTCGCGCACCAGCTCGATGCGTTGGAAGATGAACGTGAAACCATTCTAACGTTGGCTGATAAAGAAATATTAGCTGAAGACCCAGAGGATGTGCTCATCAATGTCAATATTGTTGACAACGAGCGATACAAGAAGAACGTGGAAGAACGCAAGAAGGCGCGCGCCGGCTACCAGGCTTACGACGAGGAGGCCGAGCTGCAGGCCTCCCTCGGCTTCCGACGCTCCGTCCTCTCCAAGTACGACGAGCAGATCCAGCCCGACCAACTCGATAAGGACAAGGGCTTCGTCATAGGGGACGAAGCCTCTCTCGACGCTCACAGGCGCAGAGAGCTCTTGCTCGCGCAAGGCCCCGCCTCTCGCCGCATGGAGTCGCTTGCGCTGCCGCAGCCGCAGCTCGCAGCCGACTACATGGACCAGCACGAGATCCAAGCCAAGTTCAAGAAGACTAAGAGAAAGGGCAAGATGCGGACCAAGCCCAAGGACGAGCCCATCGACGCGGACACCTACGACGCCGCCGCCGCGCCACTCGACACCGACGACACAGACGTGCGGGCGGGGGCCGCGGCGCTGGTGGTGGACGAGGAGGAGACGGAGCCCGACACCGAGCTGCACGCCGCGCTGGCCAGGGCGCGCCGCCTCAGGCTCAAGGAGGTGCAAGATGCCGCTGTGCCTAAGGTGGAAGAACTCCTGGAGCGCGTGAAGGAGGAGCAGGTGGAGGCGGGGCCGGAGGGCATGCTGTTCGACGCCACCGCAGAGTTCTGCCGGACCCTCGGGGAAGCCCCGGCGTACTTCGCCAAGCAGAACCCGCACTCGCCGGAACACAACCCGGACATGGACGTGGAGGAGGCGGCCTCCGGGGCCTGGAGCAGGGTGGACGTTGACAGCGAGAAGCCGGCCGACCTTAAAGCGGGGTCTGGCGCGGGCGCGCTGGCGGGCGAGCCGGCGCTGGGCGCGGGCGTGGCGGGCGCGCTGCGGCTGGCGCTGAGCAAGGGCTACCTGCAGCGCGCGGGGGCCGCGCCGGCGCCGCCCGCCGCGCACTCGCTGGCCGCGCGGCACTACTCCATCGAGGACAAGACCTACACGGACGACGACAAGCACGGGCGGCGGGAGCGCGGCTACTCGGGGCCGCTCACCGACTTCAGGGAGAAGAGCAACTTCCGCCCGACCGTGAAGTTGGACTACGTGGACGACGACGGGCGTCCCCTCGCGCCCAAGGAGGCCTTCCGCTACCTGTCGCACAAGTTCCACGGGAAGGGTCCCGGCAAGAACAAGCAGGAGAAGCGCATCAAGAAGGCCGTGCAGGAGGGGCTAATGAAGAAGATGAGCTCGACGGACACTCCGCTGGGCACGCTGCAGATGCTGCAGGACAAGCAGCGGGAGACGCGCTCGCCCTACGTGCTGCTCAGCGGCGCCAAGCGTGACGCGCCACACTAG
Protein
MGSKKHKKEAKKKKHKSRSRSPLEGEERERKRHRKHKDRKRERSPDVQEVPVDSHQLKDDETNHSRGDSEDRDRRMRALHRPEKNESEGDKSVEYEREKTKSPVQTQSGGAQESLSIEETNRLRAKLGLKPLEVNEKPADDGKFKDDLGEFYHKPATNITEQKKTEKLKEKIKERKEKRNIEEKLQTTLLGEGSDDDDASAWVKRSRAIETQKKEAAKRAAMLDEMDAAFGVSALLPPRAPPAPAPYRAPSLRGLRVAHQLDALEDERETILTLADKEILAEDPEDVLINVNIVDNERYKKNVEERKKARAGYQAYDEEAELQASLGFRRSVLSKYDEQIQPDQLDKDKGFVIGDEASLDAHRRRELLLAQGPASRRMESLALPQPQLAADYMDQHEIQAKFKKTKRKGKMRTKPKDEPIDADTYDAAAAPLDTDDTDVRAGAAALVVDEEETEPDTELHAALARARRLRLKEVQDAAVPKVEELLERVKEEQVEAGPEGMLFDATAEFCRTLGEAPAYFAKQNPHSPEHNPDMDVEEAASGAWSRVDVDSEKPADLKAGSGAGALAGEPALGAGVAGALRLALSKGYLQRAGAAPAPPAAHSLAARHYSIEDKTYTDDDKHGRRERGYSGPLTDFREKSNFRPTVKLDYVDDDGRPLAPKEAFRYLSHKFHGKGPGKNKQEKRIKKAVQEGLMKKMSSTDTPLGTLQMLQDKQRETRSPYVLLSGAKRDAPH
Summary
Uniprot
Pubmed
Proteomes
PRIDE
Pfam
PF03343 SART-1
Interpro
IPR005011
SNU66/SART1
ProteinModelPortal
PDB
6QX9
E-value=4.14801e-31,
Score=339
Ontologies
GO
PANTHER
Topology
Length:
733
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05127
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00065
outside
1 - 733
Population Genetic Test Statistics
Pi
22.236348
Theta
20.834642
Tajima's D
0.246679
CLR
0.312478
CSRT
0.44282785860707
Interpretation
Uncertain
