SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07542
Pre Gene Modal
BGIBMGA005837
Annotation
PREDICTED:_uncharacterized_protein_LOC106132264_[Amyelois_transitella]
Location
Bomo_Chr12(+):17197707-17214469      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 1.763
 

Sequence

CDS
ATGACAGACAGATGTGACGTCCAACAGATAGCGCTCTACGAGGGGTCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCGCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGTAAGTCAGAGCTCTCCCGCCGCACGCACGGCGCCGCACGGGGGGCCGTGGGAGCTGGCGGCCTCGTGCGCGGCCCTGCTCACCAAGTGCGACGTGCCGCTGGAGGACCAACTAGATGAAGACATCTGGCTCGACGTGACGGAGGAGTCCATGTACCGCAGCCCGCCGCTCCTGGCGCTCCTCCCGCGCTGCCTCCGCGACGTGCCCCTGGCGCATAACATCACGCTCATCATCAGGAGGATCATCGATAAGGCATCTATTAAACTAATAAGCGAAGTGGCCGTAGCGGAGGTGGTGGTGCGCAGCATCAGAGACGTGGGGATGATGAGCGAGCCCGAGTTCGAGGGTCGGGAGCTGTTGCTGGGTGACCTGCACGAGATACTCAACAGGATCGCCGTCAAGGTCCTGGACAACGTACACCTCAGCGCGCAGCCGATCATAGATATGCACCACCTGCTGAGGTTCGCCGAGGGCGAGGGCGGGGCGGAGGGCGCGGGGCGGCGGCGGGCGCTGCGGGACGCGCAGGTGTCGCTGTACGGCGCCCAGCTGGACCGCCTGCAGCACCTGCTGCACCAGCCGCACCACCACAAGCACGCCAACTACTTCGCTAACGTGCTGACGTCGGCGGTGTCCCTGGGCGACAGCACGTCCCGCACGGAGCTGGCAGCGCGTCACCAGGCCACCGTGCTGCGCGCCGTCAACTTCCTACTGCAGCAGACGCCGCGGGAAGCCGCGCCGCAGGAGCTGGTGCTGTTCGAGAGGTTGTTGGCTACGTTACTGCTGGCGGTGAGCGAGAGCGGGCGCACGCGTCGCTGGGCGGGCGGCGCGGGGGGCGAGTGGGGGGCGGCGCTGCACGAGCTGGTGTGCTGGGCGGCGGCCCCGCTGGCGCCGGCGCGGGCGCTGCAGCCGGCCCTGCTCCGCCAGCTGTACTGCACGCCGCTGCCGCTCGTCACGCCGCCGGACCCGCACGCCATGAGGAAGCTAGCCATATACATTCTGCTGATGCTAAAGCACATCCACGCGGAAGCGGAATCAAGTCCACCTGCAGTAGAATTGGCCATCACGGATTGGGCCCGGGAGTGGGCCGTCAGCATGCAGGCTGGACTGCCGGACCGCCTCCACTCTGACGGCTTGGCTCTCGAAGCGCACGCCCTGCTGCAGCAGGACGAGGAGCGGTGGGCCAAAGCCGCACAGAGAACAAAACCGGCCATAGCCAAGGCCGTGTTCAGCAAGGAGGCGACAGCGCGTGCCGTGCAGGAGGCCGCCATGAGCACCACGCGCGCCGTCGTGGAGCAGCAGAACCACGCGCGCAAACTGTTCATGGAGCACCTGCGCCGCGCCGACACACAGCGCGCCGCCGCCGCGCGGGCCTGGCGCGCGCTGTGTCGCCAGCACGCGCACGAGCACGGTGTCTGGCACGACCCTCGCAGCTACCCGACGTCGTGGCAGCTGGACGACAAGGAGGGTCCGGGTCGGGTGAGGGTCAGGCTCAGGAGGGCACATCTGAACATCCCGCCTAAGTTCTTAAAGCCACAGTTTAGGTACAAAAACGAGACAGCCCGCGCGCCGAGTCCGCTGGAGAGCGTGGTGGGGCCGGGCGTGCTGGGCGCGGGCGGGCTGGACGCGGGGCGCGTGCTGCACACGTGCCGCGGCCTGCACGTGTCGGCCGCGCACGAGGCGGCGGGCGAGGTGCTGCTGTCGGCCACGCACGTGCACTTCGTGGCGGACGGCGGCGGCGCGCAGGCCTGGCCGCTGGGCAGCGTGCGCGCGCTGCACACGCGGCGCTGGTGCCTGCAGGAGCGCGCGCTCGAGCTGTTCCTGGACGACGGCCACGCGCACCTGCTGGCCTTCGACGCCGAGGCCGACCGACTCGCCTTCCTCAAGGCGCTCGCCGCCTCCGCCGCGCTGCCCTGCAAGGTGGACGCGGACACGCTGGCGGACGCGATGGCGCAGTGGCGCAGCGGCAGCATCACCAACTGGGAGTACCTGATGCGCCTCAACGGTCTCGGCGGCCGCTCCTACAACGACCTCATGCAGTACCCGGTGCTGCCCTTCGTGCTGGCCGACTACACCTCCAAGATACTAGACCTCGACGACCCGAACACCTTCCGGGACCTGTCCAGGCCGGTGGCCGTGCAGGACAAGAAAAGGGAACACCACTACATCAACACGTATAATGACCTGAAGGCTGCCCGGCGCGAAGCCTGCAGCTCGCAGCTGTCCCGGCTGCCGCACCACTACGCGTCCCTGTACTCCAACTCGGGCGCCGTGCTGCACTACCTGGTGCGGCTGCCGCCCTTCACCGAGCTATTCCTCAACTACCAAGACAACAACTTCGACATGCCGGACCGCACCTTCCACTCGCTGGCGACCACGTGGCGTCTCATCACCAAGGATTCGCCCACCGACGTCAAGGAACTCATACCTGAACTATTTTATCTACCGGAACTTTTTTACAATAACGAAGGACTGAATCTGGGCATACGTCAGTGCGGGGAGGGAATCGACGAGGTGGAGCTGCCCCCCTGGGCGGCGGACGCCCGGCTGTTCACGCTGCTGCACCGCCAGGCGCTGGAGGCCGCGCACGTCAGCGAGACCCTGCCGCACTGGATCGACCTGGTGTTCGGGCACAAGCAGACGGGACCGGCCGCGCTCGACGCCATCAACGTGTTCCCGGCCTGCACTTACTACGGGTTCGACCCCGACGCGCTGGAGGACGAGGTAGACCGCAGCGCGGCCTGCGCCATGGTGCGCACGTACGGACAGGTGCCGCGCCGCCTGCTGCGCCAGCCGCACCCGCACGCCGCGCGCGAGCTGTCCCCGCCCGGCCCCGCGCCGCCCCGCGCCGCGCCGCCCGTGAGCGCGTGCGTGCGGGGCGCGCGCTGGGGGCGCTACTGCGGCTCGCCCGCGCTGCCGCCGCCCGCGCCGCTGGCCCGCCGCCTGCTGCCCGCCGCCTGCACGCTGCTGGCGCTGCCGCACGCGCGCTCCGTCGCCGTCGCCACCCGCGCCACGGCTCTCTTCGCTCTGCACAATGACTCTGGTAACCTGGGCCTGGCGCTGGCATCGTGGGGTCACTCAGACAACATCGTGCGCATCAAGCGTCGACGCGAACCCCACTTACCGTTGTTACAGTCCTACCCACTGGATCAGATAACAGCCGCGTGCAGCACCGTGGCGGGCGCGGGCGGCGCGTGCACGCTGGCGCTGGGCCACGCGTCGGGCCGCGTGCTGTGCGTGCGCGCGGAGGGCGTGCGGGCCCTGCACGCGCACCGCAGCGCCGTGCGGGCCCTGCACGCGCACCGCAGCGCCGTGCGGGCCCTGCACGCGGCGCCGCGCCAGGCGCTGCTGCTGTCGGCCGCGGCGGACGGCACCGTGCTGCTCTGGGACCTGCACACGTTGACGTACATCCGAACCCTGCCCAACCGCGACATGCTGCCGGTGACCTTGGCGACGATAAGCGAGACCCTCGGCGACGTGGCCACGGTGCACGAGCTGTCCCCCCGCAGCGCCCCGGTGGACGGCGGGGGGGCGGCCAGGAACATCCCCGAGCCCGACCACGCCGCCGACACTTATGAAAAAGACGCACCGCATAAATACAAGTCCTTGATACGGGTTCACACGTGCAACGGGCGGTTTGTTGGTAGCGTGAAGATATCAGAGCAGGTGACGAGCATCTGCTACTCCACGGCTCCCGAGGGGGTCAGCGTGAACAGTGTGGCGGTAGGGCTGTGGGGTGGGGGGGTGCGGCTGTTCTCGTCCTGGGATCTACAGCCGGTCTGCTCCCTGCCGCCGCTTGTCGCCCAGCTACCGCTGCTCAGCTTAACGTATAGCAGTGACAACAGCATTCTCTTCGGCTGCTACGGAGACGGCACGGTGGTCGCGTGGGAGAGCGCACAGGGCAAGCCCGCGCCCGTCCGCATGCACGCCGCCAGCTCGCTCGTCTGA
Protein
MTDRCDVQQIALYEGSWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGRGSWRPRARPCSPSATCALEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDLSRRTHGAARGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDVSQSSPAARTAPHGGPWELAASCAALLTKCDVPLEDQLDEDIWLDVTEESMYRSPPLLALLPRCLRDVPLAHNITLIIRRIIDKASIKLISEVAVAEVVVRSIRDVGMMSEPEFEGRELLLGDLHEILNRIAVKVLDNVHLSAQPIIDMHHLLRFAEGEGGAEGAGRRRALRDAQVSLYGAQLDRLQHLLHQPHHHKHANYFANVLTSAVSLGDSTSRTELAARHQATVLRAVNFLLQQTPREAAPQELVLFERLLATLLLAVSESGRTRRWAGGAGGEWGAALHELVCWAAAPLAPARALQPALLRQLYCTPLPLVTPPDPHAMRKLAIYILLMLKHIHAEAESSPPAVELAITDWAREWAVSMQAGLPDRLHSDGLALEAHALLQQDEERWAKAAQRTKPAIAKAVFSKEATARAVQEAAMSTTRAVVEQQNHARKLFMEHLRRADTQRAAAARAWRALCRQHAHEHGVWHDPRSYPTSWQLDDKEGPGRVRVRLRRAHLNIPPKFLKPQFRYKNETARAPSPLESVVGPGVLGAGGLDAGRVLHTCRGLHVSAAHEAAGEVLLSATHVHFVADGGGAQAWPLGSVRALHTRRWCLQERALELFLDDGHAHLLAFDAEADRLAFLKALAASAALPCKVDADTLADAMAQWRSGSITNWEYLMRLNGLGGRSYNDLMQYPVLPFVLADYTSKILDLDDPNTFRDLSRPVAVQDKKREHHYINTYNDLKAARREACSSQLSRLPHHYASLYSNSGAVLHYLVRLPPFTELFLNYQDNNFDMPDRTFHSLATTWRLITKDSPTDVKELIPELFYLPELFYNNEGLNLGIRQCGEGIDEVELPPWAADARLFTLLHRQALEAAHVSETLPHWIDLVFGHKQTGPAALDAINVFPACTYYGFDPDALEDEVDRSAACAMVRTYGQVPRRLLRQPHPHAARELSPPGPAPPRAAPPVSACVRGARWGRYCGSPALPPPAPLARRLLPAACTLLALPHARSVAVATRATALFALHNDSGNLGLALASWGHSDNIVRIKRRREPHLPLLQSYPLDQITAACSTVAGAGGACTLALGHASGRVLCVRAEGVRALHAHRSAVRALHAHRSAVRALHAAPRQALLLSAAADGTVLLWDLHTLTYIRTLPNRDMLPVTLATISETLGDVATVHELSPRSAPVDGGGAARNIPEPDHAADTYEKDAPHKYKSLIRVHTCNGRFVGSVKISEQVTSICYSTAPEGVSVNSVAVGLWGGGVRLFSSWDLQPVCSLPPLVAQLPLLSLTYSSDNSILFGCYGDGTVVAWESAQGKPAPVRMHAASSLV

Summary

Uniprot
A0A212F661  
Pubmed
22118469   
EMBL
AGBW02010072    OWR49230.1   
Proteomes
UP000007151   
Pfam
PF02138   Beach        + More
PF14844   PH_BEACH
Interpro
IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS       
IPR000409   BEACH_dom       
IPR036372   BEACH_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR023362   PH-BEACH_dom       
IPR030464   LYST       
SUPFAM
SSF50978   SSF50978        + More
SSF81837   SSF81837       
Gene 3D
1.10.1540.10     2.130.10.10    
CDD
cd06071  Beach
ProteinModelPortal
A0A212F661  
PDB
1MI1     E-value=1.37473e-71,     Score=691

Ontologies

KEGG
101745770    K14308 nuclear pore complex protein Nup54 | (RefSeq) probable nucleoporin Nup54
GO
GO:0007040   GO:0005515   GO:0006260   GO:0015074   GO:0004190   GO:0006508   GO:0015914   GO:0016021   GO:0016020   GO:0003707   GO:0051537  
PANTHER
PTHR13743:SF86  

Topology

Length:
1739
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05554
Exp number, first 60 AAs:
0.0027
Total prob of N-in:
0.00015
outside
1  -  1739
 
 

Population Genetic Test Statistics

Pi
16.267789
Theta
19.859438
Tajima's D
-1.092541
CLR
1.778175
CSRT
0.12044397780111
Interpretation
Uncertain
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