Silkworm Genome Informatics Database

Gene

KWMTBOMO07536

Pre Gene Modal

BGIBMGA012685

Annotation

hypothetical_protein_TcasGA2_TC001839_[Tribolium_castaneum]

Location

Bomo_Chr12(+):16977585-16978804 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.38

CDS

ATGTTAGCTAACAGCCCCAGTTACGCGAAAGTTGCACAAAATACGATGTTCCCAAAAAAAGATCAAGCCATTGTTATTGACGCGATAGAAAACGTGCAAATTAAAGATTATGCACAAGCCTTAGGGAAGGTCATAGATCCAACTCAAATAAGGTTTCTGTCTAGAATTTCTAATAACCGCATTTGTATATATTTGTCATCAAAGTCGATAGCTGATGACATCGTTGATAATAAAAAGTATATAACCGTACAGAACCACAAGCTACCAATTCGACCACTGATCAACAGAAACAAACGTATCATTCTCTCAAACGTATGCCCAATTATCCCTCACTCTGAAATAGAATCCAAACTGAAGGAAGTAGGAATCAATCCAATGTCGCCTATATCTTTTTTGAGGGCCGGTATCAACGATCCTGGATATAATCACATATTGAGCTTCCGCCGTCAACTCTTTGTGACTCCCGAGGATTTTTACCGCCTTCCAGAAAAGATCTCCATAGAATTTGAAGACACTCCCTACTGGATCTATCTATCGTCGGATACTATGACCTGCTTCGTTTGCAAGAGTGAGGGCCATATTGCTTCGAAATGTCCTCAAAGCGAGTTAGGTATAACTTCTTCAATTGAAATTATGGACAACAGCGTGTCACAAAATGAACCTTCTAACTTTAAAAGGCCACATCCACCTACTGAATCTTCTACAACTGATGAGCCCCAGGTATTTGAAACAGAGACCCCAGAAGAGACTATCATCGACTACGACAGCGACACTCTTTCACAATCAAGTTCAGAAGGAGCCATGAAGAGGAACAGTGTTAAAAAACTTAGGAAGTCACCCCAGATCGACTTAGACTTACAAAACTGGAAAGATATTGAACACTTTTTATCAAGCTCTGTCAAACCCTACCCACTAACAGGAGTTCAAGTAAAGAATTATCTGGAACACACCTATGGTGTCAAAGACATCGAAGAAATCACGGCTAATTACACTGAGAACATTGACGATTTAATTATGCTTTTTAAAGACTTAATTCCCATTATTGCAAGTCGTTCTGTTAAAAATAGAGTTACTCGTATTGTTTCTAAACTTAAATCTATTAAAAATAAACAATAA

Protein

MLANSPSYAKVAQNTMFPKKDQAIVIDAIENVQIKDYAQALGKVIDPTQIRFLSRISNNRICIYLSSKSIADDIVDNKKYITVQNHKLPIRPLINRNKRIILSNVCPIIPHSEIESKLKEVGINPMSPISFLRAGINDPGYNHILSFRRQLFVTPEDFYRLPEKISIEFEDTPYWIYLSSDTMTCFVCKSEGHIASKCPQSELGITSSIEIMDNSVSQNEPSNFKRPHPPTESSTTDEPQVFETETPEETIIDYDSDTLSQSSSEGAMKRNSVKKLRKSPQIDLDLQNWKDIEHFLSSSVKPYPLTGVQVKNYLEHTYGVKDIEEITANYTENIDDLIMLFKDLIPIIASRSVKNRVTRIVSKLKSIKNKQ

Uniprot

H9JT23 A0A232EG68 D7EJ72 A0A2P8XXI1 D7GYJ7 D6WY68 + More
D6W8G0 J9LJ24 K7JLH3 A0A232EF26 A0A139W9X5 J9KLI3

Pubmed

19121390 28648823 18362917 19820115 29403074 20075255 + More

EMBL

BABH01030666 NNAY01004844 OXU17350.1 KQ972957 EFA12599.2 PYGN01001199 + More
PSN36723.1 GG695773 EFA13440.1 KQ971357 EFA07722.1 KQ971307 EFA10871.1 ABLF02005418 ABLF02005422 ABLF02022252 ABLF02041296 AAZX01004612 NNAY01005139 OXU16955.1 KQ971867 KYB24709.1 ABLF02021504 ABLF02028457

Proteomes

UP000005204 UP000215335 UP000007266 UP000245037 UP000007819 UP000002358 + More

PRIDE

H9JT23

Pfam

PF00098   zf-CCHC        + More
PF00078   RVT_1
PF14529   Exo_endo_phos_2

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR002156   RNaseH_domain
IPR036397   RNaseH_sf
IPR000477   RT_dom
IPR005135   Endo/exonuclease/phosphatase
IPR012337   RNaseH-like_sf
IPR036691   Endo/exonu/phosph_ase_sf

SUPFAM

SSF57756   SSF57756        + More
SSF56219   SSF56219
SSF53098   SSF53098

Gene 3D

3.30.420.10 3.60.10.10

ProteinModelPortal

H9JT23 A0A232EG68 D7EJ72 A0A2P8XXI1 D7GYJ7 D6WY68 + More
D6W8G0 J9LJ24 K7JLH3 A0A232EF26 A0A139W9X5 J9KLI3

KEGG

NA

GO

GO:0003676 GO:0008270 GO:0004523 GO:0015074 GO:0004190 GO:0006508 GO:0015914 GO:0016021 GO:0016020 GO:0003707 GO:0051537

Length:

371

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00241

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01554

outside

1 - 371

Pi

19.410245

Theta

21.596214

Tajima's D

-0.793992

CLR

2.212716

CSRT

0.177641117944103

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree