SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07532
Pre Gene Modal
BGIBMGA005094
Annotation
PREDICTED:_ATP-binding_cassette_sub-family_G_member_1_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.253
 

Sequence

CDS
ATGATCATGGGCATCAGGACACATGATGGTAATTGCGCGATGACGCCCGGCCTGAAAATGGAATCGAAAGGCACCCAGATACACTTACCGCTGATGGGGCGTGGGAGCAGAGGCGAGCTCAATGATAAAGTCACGTTCTCCCAGGGCAAAACCTTCACGGAGCAGCTCAATAATGGCCAAGTACTTGGTGGCTCCCAAATGAACCTATGCAATGGCGCTGCGGGTGCAGCAGGAATCACAACTCTCGTTCCCAAGATCCCAAATGGCTATGGAGATCAGAAAAAACCAATGGCGACTCTCACACACCTGCCAAAAAGACCTCCAGTGGACATAGAGTTCTCTGATTTATCCTATTCAGTCAGCGAGGGCAGGAAGAGAGGTTACAAGTCCTTGCTTAAATGTATCAATGGTACCTTTCGATCAGGGGAGCTGACAGCCATTATGGGACCTTCGGGGGCAGGGAAGAGCACACTCATGAACATTCTAGCCGGATATAAAACATCAAACGTCAGCGGATCAATCCTGATAAACGGAAAAGAAAGAAATTTGAGAAGATTCAGAAAACTATCCTGTTATATAATGCAGGATGACTGCCTTCTACCACATTTGACGGTCCGGGAGGCGATGTATGTATCAGCTAACCTGAAACTAGGGAAGGACATGACAGCTACAACAAAGAAGATAGTCATCGATGAAATATTAGAAATGCTCGGTCTTATCGAGGCCGGTGATACTAGGACCATAAATCTATCAGGAGGACAGAAAAAAAGACTATCAATAGCCTTGGAGCTAGTTAACAATCCACCGGTAATGTTCTTTGATGAACCAACTTCTGGATTGGATAGTTCCTCGTGTTTCCAATGCATATCATTATTAAAATCTTTGGCTAGAGGCGGCAGGACGATAATCTGTACTATCCATCAACCGTCTGCCCGATTATTTGAGATGTTTGACTTTTTATACACGTTGACCGATGGGCAGTGTATCTACCAAGGGAAGGTCACGGGTCTCGTGCCATTTTTGTCGTCGATGGGGCTCCACTGCCCAAGCTACCATAACCCTGCTGATTATTTAATGGAGGTAGCAAGCGGTGAACACGGTGAGTGGGTTCACAAGCTAGTAAGAGCCGTGAATAAAGGAAACTGCGGACGGGGACAGTCTTCTTCCACATCATCATCATCATCGTCCGTGCCTCAGAATGTAAATTACAATAATCAACCGAATAAAAATAATACTCAGAAAGAAGCTCTTTCTATAGTTGTTGACAAACCAACGTGTACTGTGATAGACATGTCAGAACCGGTACTCAATACCGAAAAGCAGAACATTCCAAACTCTACGAACCTCGCTCCTGTAACCTGCACCACTTCACTATTAGACTCCAGCGAGAGTTTCACAAAGAAGCCAGTTAAAACCGGTTTCCCGACGTCAGGGTGGAAGCAATTTTGGATCTTATTGAAGCGAACCTTCCGAAGTATTCTTAGAGACCAGACATTGACGCATTTAAGACTATGTTCGCATACGATCGTGGGATTGTTGATTGGCTTCCTCTATTACGATATAGGGAACGATGCCGCCAAAGTGATGAGCAATGCTGGATGCATTTTTTTTACCGTGATGTTCACCATGTTTACTGCCATGATGCCTACCATACTCACATTCCCGACAGAGATGAGCGTATTCGTGAGAGAACATTTAAATTACTGGTATTCGTTGAAGGCTTTCTATTTCGCAAAAACAATGGCAGATCTACCATTTCAGATAATATTCAGTGGCGTCTACGTGATCATAGTGTACTTCATGACGGGCCAGCCGATGCAGACCGATCGAGTGCTGATGTTCACGACCATCAACATACTCACGGCGCTAGTCTCCCAGTCTCTAGGACTTCTCATCGGTGCCGCCATGAAGATCGAGACTGGGGTGTACCTGGGACCGGTCACGACAATACCCGTCGTCTTATTCTCCGGTTTCTTCGTGAACTTCAACGCAATACCAAACTACCTTCGATGGCTGACGTACTTAAGCTATGTTAGATATGGCTTCGAAGGAGCCATGCTGTCGGTTTACGGGTTCGGAAGGGAGAAGCTGTATTGTTCGGAAGCATACTGCCATTTCCGGAACCCAGATCTCTTCTTGAAGGAAATGACGATGGATAAATCGAACTTTTGGATCGACGTTGGAGCTTTAAGCGCTCTGTTCGTCTTCATAAGAGTAATCTCATATTTAGTTCTAAGGTTTAAGTTGAAGATGATGCAATAA
Protein
MIMGIRTHDGNCAMTPGLKMESKGTQIHLPLMGRGSRGELNDKVTFSQGKTFTEQLNNGQVLGGSQMNLCNGAAGAAGITTLVPKIPNGYGDQKKPMATLTHLPKRPPVDIEFSDLSYSVSEGRKRGYKSLLKCINGTFRSGELTAIMGPSGAGKSTLMNILAGYKTSNVSGSILINGKERNLRRFRKLSCYIMQDDCLLPHLTVREAMYVSANLKLGKDMTATTKKIVIDEILEMLGLIEAGDTRTINLSGGQKKRLSIALELVNNPPVMFFDEPTSGLDSSSCFQCISLLKSLARGGRTIICTIHQPSARLFEMFDFLYTLTDGQCIYQGKVTGLVPFLSSMGLHCPSYHNPADYLMEVASGEHGEWVHKLVRAVNKGNCGRGQSSSTSSSSSSVPQNVNYNNQPNKNNTQKEALSIVVDKPTCTVIDMSEPVLNTEKQNIPNSTNLAPVTCTTSLLDSSESFTKKPVKTGFPTSGWKQFWILLKRTFRSILRDQTLTHLRLCSHTIVGLLIGFLYYDIGNDAAKVMSNAGCIFFTVMFTMFTAMMPTILTFPTEMSVFVREHLNYWYSLKAFYFAKTMADLPFQIIFSGVYVIIVYFMTGQPMQTDRVLMFTTINILTALVSQSLGLLIGAAMKIETGVYLGPVTTIPVVLFSGFFVNFNAIPNYLRWLTYLSYVRYGFEGAMLSVYGFGREKLYCSEAYCHFRNPDLFLKEMTMDKSNFWIDVGALSALFVFIRVISYLVLRFKLKMMQ

Summary

EMBL
BABH01019639    BABH01019640    ODYU01009789    SOQ54444.1    AGBW02012508    OWR44973.1    + More
KQ459592    KPI96884.1    KQ460642    KPJ13322.1    GL437108    EFN71086.1    ADTU01004385    QOIP01000003    RLU24926.1    JR053625    AEY61978.1    GFDF01000525    JAV13559.1    KZ288269    PBC30014.1    GL451783    EFN78564.1    GL887645    EGI70628.1    KK107295    EZA53080.1    KQ980249    KYN17092.1    KQ435824    KOX72124.1    KQ414613    KOC69008.1    GBYB01015295    GBYB01015297    JAG85062.1    JAG85064.1    KK853235    KDR09575.1    KQ976407    KYM91447.1    GBYB01015296    JAG85063.1    KQ977004    KYN06511.1    AE014134    AAF51027.1    AAN10342.1    ABV53618.1    NEVH01022640    PNF18457.1    CH954177    KQS70086.1    EDV57715.1    BT029941    BT029944    ABM92815.1    ABM92818.1    ABV53617.1    AY119101    AAM50961.1    CM002910    KMY88046.1    CM000361    EDX03696.1    KMY88045.1    KQ434864    KZC09024.1    GALX01005540    JAB62926.1    KQ971338    EFA02575.1    AB030450    BAA83106.1    CVRI01000054    CRL00838.1    CM000157    KRJ97266.1    EDW87622.2    KRJ97265.1    CH480820    EDW54221.1    CH902620    EDV30763.1    KPU73027.1    LJIG01001728    KRT85212.1    UFQT01000144    SSX20845.1    SSX20846.1    CH940661    EDW71193.1    KRF85522.1    CH963920    EDW77651.2    CP012523    ALC37935.1    GARF01000010    JAC88927.1    GEZM01061808    JAV70306.1    GDHC01011333    JAQ07296.1    GDHC01005868    JAQ12761.1    GFTR01007729    JAW08697.1    GBBI01003086    JAC15626.1    AJWK01026236    AJWK01026237    GBHO01041657    JAG01947.1    GDIP01118779    JAL84935.1    GDIQ01079329    JAN15408.1    GDIP01148690    GDIQ01222046    LRGB01000141    JAJ74712.1    JAK29679.1    KZS20629.1    GDIQ01123836    JAL27890.1    GDIQ01038872    JAN55865.1    GDIQ01038871    JAN55866.1    GDIP01221831    JAJ01571.1    GL732674    EFX67564.1    GDIQ01064899    JAN29838.1    GDIP01096852    JAM06863.1    KF906302    AHK05667.1    GDIQ01117534    JAL34192.1    GDIP01023214    JAM80501.1    JH431485    KK852972    KDR13078.1    GDIP01075833    JAM27882.1    NNAY01001049    OXU25341.1    PNF18493.1    KYN06510.1    GDIQ01019922    JAN74815.1    GGMS01002375    MBY71578.1    EFN71088.1    GGMR01002391    MBY15010.1    KX056437    APG57147.1    GFXV01000246    MBW12051.1    ABLF02036674    AHAT01024180    GEDC01030646    JAS06652.1    KV467275    OCT56466.1    GEDC01030780    GEDC01024857    GEDC01012812    GEDC01006698    GEDC01001329    JAS06518.1    JAS12441.1    JAS24486.1    JAS30600.1    JAS35969.1    KL206095    KFV78918.1    CM004478    OCT72417.1    KK457451    KFQ77156.1    KL225327    KFW71006.1    KL226389    KFM13375.1   
Pfam
PF00005   ABC_tran        + More
PF01061   ABC2_membrane
Interpro
IPR013525   ABC_2_trans        + More
IPR003593   AAA+_ATPase       
IPR017871   ABC_transporter_CS       
IPR003439   ABC_transporter-like       
IPR027417   P-loop_NTPase       
SUPFAM
SSF52540   SSF52540       
PDB
6FFC     E-value=8.30703e-48,     Score=483

Ontologies

Topology

Length:
753
Number of predicted TMHs:
7
Exp number of AAs in TMHs:
150.54153
Exp number, first 60 AAs:
0.00023
Total prob of N-in:
0.00520
outside
1  -  499
TMhelix
500  -  519
inside
520  -  531
TMhelix
532  -  554
outside
555  -  583
TMhelix
584  -  603
inside
604  -  609
TMhelix
610  -  632
outside
633  -  641
TMhelix
642  -  664
inside
665  -  670
TMhelix
671  -  693
outside
694  -  722
TMhelix
723  -  745
inside
746  -  753
 
 

Population Genetic Test Statistics

Pi
30.481674
Theta
25.243064
Tajima's D
0.458034
CLR
0.6223
CSRT
0.513574321283936
Interpretation
Uncertain
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