Gene

KWMTBOMO07529  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005888

Annotation

PREDICTED:_ELAV-like_protein_2_[Bombyx_mori]

Location

Bomo_Chr12(-):16447151-16448289      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.564

CDS

ATGATGGCAAATCCGCTCGACTCTCTAAACCAGCCCACGCAAAATGGAAGTAAGTTGCAGCCGTGCAAGAATGAGTCTAAGACGAATTTGATAATCAATTATCTGCCGCAAACGATGACCCAGGAGGAAATTCGATCATTATTTTCGAGTGTCGGCGAAGTAGAAAGCTGCAAGTTAATAAGGGACAAGGTGACCGTGTTTCCGGATCATATTCTCAACGGTCAGAGTCTTGGATACGCTTTCGTCAACTATCACCGAGCTGAGGATGCGGAAAAGGCGGTGAATACACTCAATGGTCTCAGACTGCAGAACAAGATCATCAAAGTTTCATACGCACGTCCAAGCTCTGATGCGATTAAAGGTGCCAACCTCTACGTCTCCGGACTCCCGAAACACATGACTCAGCAAGAATTGGAGAAACTCTTCGGCCCCTACGGTACCATTATCAGCTCGCGCATTCTCCATGAGAACATGAATGTCGGTCAGCTGATGCAGGTAGCTCCAGAAGATCACTCTATCCAAGGTCCATCAAGAGGAGTCGCCTTCATCCGGTACGATCAAAGGTGTGAAGCAGAAGCAGCTATACGTGAGTTGAATGGCACTATTCCACCTGGTGGAACAACCCCAATGACTGTCAAGTGTGCAAACAACCCAAGCAATCAGAATAAGGTTTTGGCACCCCTTACTGCATACCTGGCTCCAACTTCAACACGGCGCATCATAACCCCTGCAGGTGGATCAGGCTGGTGTATCTTCGTGTACAACATCGGGGCTGACACTGAGGAGAGTGTTCTGTGGCAACTTTTTGGGCCATTTGGTGCCGTCCAGAGTGTGAAAATAATTAGAGATCCCTCTACAAACAAGTGCAAAGGTTATGGTTTTGTTACTATGACCAATTATGATGAGGCTGTTGTTGCCATTCAATCCCTGAATGGCTATTCACTGAACGGTCAGGTCCTTCAGGTCAGCTTCAAGACCAACAAGAGTAAATCTTAA

Protein

MMANPLDSLNQPTQNGSKLQPCKNESKTNLIINYLPQTMTQEEIRSLFSSVGEVESCKLIRDKVTVFPDHILNGQSLGYAFVNYHRAEDAEKAVNTLNGLRLQNKIIKVSYARPSSDAIKGANLYVSGLPKHMTQQELEKLFGPYGTIISSRILHENMNVGQLMQVAPEDHSIQGPSRGVAFIRYDQRCEAEAAIRELNGTIPPGGTTPMTVKCANNPSNQNKVLAPLTAYLAPTSTRRIITPAGGSGWCIFVYNIGADTEESVLWQLFGPFGAVQSVKIIRDPSTNKCKGYGFVTMTNYDEAVVAIQSLNGYSLNGQVLQVSFKTNKSKS

Uniprot

A0A0N0PBM7   A0A194PV67   H9J8P6   A0A2A4J1E6   A0A2H1W891   I4DPM2   + More
A0A212F563   A0A1Y1NCP8   A0A0T6BAV5   A0A1Y1NCR0   A0A139WPC8   V9I8A0   A0A1B0CNX6   N6T223   U4UME0   A0A1B6DYH7   A0A1B6FAB4   A0A1B6FNG9   A0A1B6FMI4   A0A1B6HCD8   V9I7T6   A0A1B6IE92   A0A139WPK5   A0A1B6MPA0   A0A2A3EDH0   A0A1B6L213   A0A1B6BYP2   A0A1B6LZ91   A0A1B6IH54   A0A1B6HLT5   A0A1B6L4M1   A0A1B6JSA0   A0A1B6KIN8   A0A0L7LF28   A0A1B6LLS9   A0A1B6M3J1   A0A1Q3FNL0   A0A0A9WML8   B0W031   A0A0A9WPM1   A0A0K8T382   B3MS25   A0A0K8T3U4   B0X9Z1   B4L604   A0A1W4VJY2   B4M748   B4Q1Z0   A0A0M4EU27   B4NEI3   B4JM01   B3NX84   E1NZB4   A0A3B0KLA2   B5DNV4   A0A146KP32   A0A146MFB4   W8AKC4   E0VBM6   A0A034V4J7   A0A0N8NZT3   E9IGR2   A0A0Q9WVT0   A0A1W4VKQ0   A0A0Q5TKR8   Q9VYI0   A0A0R1EAH8   A0A0Q9XEN8   A0A3B0KRV0   A0A0R3P1Z1   A0A1B0D1N4   A0A0A1XJ57   A0A0A1WSN6   A0A1I8MKP7   A0A1I8Q1M4   A0A1I8MKP3   B4IGK8   A0A1I8Q1K5   A0A1B0G809   A0A1B0AY01   T1K3Z8   A0A1A9VWP4   A0A1L8DGL4   A0A1A9WWW7   A0A1J1HR36   A0A2L2Y0N9   A0A1L8DH41   A0A1L8DH01   A0A2R7WD77   U5ER87   A0A336LT12   A0A248XBD7   A6YB86   A0A1B0GQI6   C3YCD7   Q966S6   A0A223FSJ8   Q7YTD6   A0A182KM55   Q7PYD4  

Pubmed

26354079    19121390    22651552    22118469    28004739    18362917    + More
19820115    23537049    26227816    25401762    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    26823975    24495485    20566863    25348373    21282665    18057021    12324951    12591606    25830018    25315136    26561354    17448990    18563158    11754014    28765531    12837244    20966253    12364791   

EMBL

KQ460954    KPJ10266.1    KQ459592    KPI96883.1    BABH01030258    NWSH01004215    + More
PCG65344.1    ODYU01006980    SOQ49315.1    AK403674    BAM19862.1    AGBW02010238    OWR48876.1    GEZM01006631    JAV95671.1    LJIG01002450    KRT84490.1    GEZM01006629    JAV95673.1    KQ971307    KYB29716.1    JR035794    JR035797    JR035798    JR035799    AEY56686.1    AEY56689.1    AEY56690.1    AEY56691.1    AJWK01021069    AJWK01021070    APGK01047133    APGK01047134    KB741077    ENN74149.1    KB632384    ERL94282.1    GEDC01021269    GEDC01006570    JAS16029.1    JAS30728.1    GECZ01022590    JAS47179.1    GECZ01018021    JAS51748.1    GECZ01018343    JAS51426.1    GECU01035349    GECU01017493    JAS72357.1    JAS90213.1    JR035802    JR035803    JR035804    JR035805    AEY56694.1    AEY56695.1    AEY56696.1    AEY56697.1    GECU01022448    JAS85258.1    KYB29715.1    GEBQ01002266    JAT37711.1    KZ288291    PBC29216.1    GEBQ01022296    JAT17681.1    GEDC01030930    GEDC01027761    JAS06368.1    JAS09537.1    GEBQ01011043    JAT28934.1    GECU01021467    JAS86239.1    GECU01032046    JAS75660.1    GEBQ01021308    JAT18669.1    GECU01005704    JAT02003.1    GEBQ01028657    JAT11320.1    JTDY01001464    KOB73801.1    GEBQ01015361    JAT24616.1    GEBQ01009458    JAT30519.1    GFDL01005856    JAV29189.1    GBHO01033902    JAG09702.1    DS231816    EDS37603.1    GBHO01033905    JAG09699.1    GBRD01005965    JAG59856.1    CH902622    EDV34580.1    GBRD01005966    JAG59855.1    DS232556    EDS43417.1    CH933812    EDW05800.1    CH940653    EDW62615.1    CM000162    EDX01511.1    CP012528    ALC48510.1    CH964239    EDW82152.1    CH916371    EDV91762.1    CH954180    EDV47256.1    BT125663    AE014298    ADN43900.1    AFH07361.1    AFH07363.2    AHN59643.1    OUUW01000021    SPP89390.1    CH379065    EDY73206.1    GDHC01020368    JAP98260.1    GDHC01001339    JAQ17290.1    GAMC01017485    GAMC01017483    JAB89070.1    DS235033    EEB10782.1    GAKP01021503    GAKP01021499    JAC37449.1    KPU75204.1    GL763054    EFZ20185.1    KRF99576.1    KQS30422.1    KQS30423.1    AF239667    BT120384    AAF43091.1    AAF48215.3    ABW09403.1    ADD16464.1    AFH07360.1    AFH07362.1    AGB95339.1    AGB95340.1    KRK06190.1    KRK06191.1    KRG07039.1    SPP89389.1    KRT07226.1    AJVK01010341    AJVK01010342    GBXI01003305    JAD10987.1    GBXI01012767    JAD01525.1    CH480836    EDW48958.1    CCAG010000149    CCAG010000150    JXJN01005475    JXJN01005476    CAEY01001563    GFDF01008513    JAV05571.1    CVRI01000014    CRK89852.1    IAAA01006536    LAA01731.1    GFDF01008420    JAV05664.1    GFDF01008419    JAV05665.1    KK854488    PTY16275.1    GANO01003851    JAB56020.1    UFQT01000095    SSX19729.1    KY569299    ASW25830.1    EF384209    ABO93208.1    AJVK01007258    AJVK01007259    GG666501    EEN61974.1    AB066563    BAB62225.1    MF409251    AST12253.1    AY313137    AAP79277.1    AAAB01008987    EAA01735.5   

Proteomes

UP000053240    UP000053268    UP000005204    UP000218220    UP000007151    UP000007266    + More
UP000092461    UP000019118    UP000030742    UP000242457    UP000037510    UP000002320    UP000007801    UP000009192    UP000192221    UP000008792    UP000002282    UP000092553    UP000007798    UP000001070    UP000008711    UP000000803    UP000268350    UP000001819    UP000009046    UP000092462    UP000095301    UP000095300    UP000001292    UP000092444    UP000092460    UP000015104    UP000078200    UP000091820    UP000183832    UP000001554    UP000075882    UP000007062   

PRIDE

H9J8P6    E1NZB4    Q9VYI0   

Pfam

PF00076   RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR006548   ELAD_HU_SF       
IPR000504   RRM_dom       
IPR002343   Hud_Sxl_RNA       
IPR035979   RBD_domain_sf       
IPR034775   ELAV/Hu_RRM1       
IPR003954   RRM_dom_euk       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12650  RRM1_Hu

ProteinModelPortal

A0A0N0PBM7   A0A194PV67   H9J8P6   A0A2A4J1E6   A0A2H1W891   I4DPM2   + More
A0A212F563   A0A1Y1NCP8   A0A0T6BAV5   A0A1Y1NCR0   A0A139WPC8   V9I8A0   A0A1B0CNX6   N6T223   U4UME0   A0A1B6DYH7   A0A1B6FAB4   A0A1B6FNG9   A0A1B6FMI4   A0A1B6HCD8   V9I7T6   A0A1B6IE92   A0A139WPK5   A0A1B6MPA0   A0A2A3EDH0   A0A1B6L213   A0A1B6BYP2   A0A1B6LZ91   A0A1B6IH54   A0A1B6HLT5   A0A1B6L4M1   A0A1B6JSA0   A0A1B6KIN8   A0A0L7LF28   A0A1B6LLS9   A0A1B6M3J1   A0A1Q3FNL0   A0A0A9WML8   B0W031   A0A0A9WPM1   A0A0K8T382   B3MS25   A0A0K8T3U4   B0X9Z1   B4L604   A0A1W4VJY2   B4M748   B4Q1Z0   A0A0M4EU27   B4NEI3   B4JM01   B3NX84   E1NZB4   A0A3B0KLA2   B5DNV4   A0A146KP32   A0A146MFB4   W8AKC4   E0VBM6   A0A034V4J7   A0A0N8NZT3   E9IGR2   A0A0Q9WVT0   A0A1W4VKQ0   A0A0Q5TKR8   Q9VYI0   A0A0R1EAH8   A0A0Q9XEN8   A0A3B0KRV0   A0A0R3P1Z1   A0A1B0D1N4   A0A0A1XJ57   A0A0A1WSN6   A0A1I8MKP7   A0A1I8Q1M4   A0A1I8MKP3   B4IGK8   A0A1I8Q1K5   A0A1B0G809   A0A1B0AY01   T1K3Z8   A0A1A9VWP4   A0A1L8DGL4   A0A1A9WWW7   A0A1J1HR36   A0A2L2Y0N9   A0A1L8DH41   A0A1L8DH01   A0A2R7WD77   U5ER87   A0A336LT12   A0A248XBD7   A6YB86   A0A1B0GQI6   C3YCD7   Q966S6   A0A223FSJ8   Q7YTD6   A0A182KM55   Q7PYD4  

PDB

1G2E     E-value=1.37588e-54,     Score=538

KEGG

101740581    K13208 ELAV like protein 2/3/4 | (RefSeq) ELAV-like protein 2

GO

GO:0003723   GO:0003729   GO:0008049   GO:0051252   GO:0008266   GO:0005737   GO:0050684   GO:0016491   GO:0000166   GO:0003676   GO:0004012   GO:0005524   GO:0015914   GO:0016021   GO:0016020   GO:0003707   GO:0051537  

Length:

331

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04684

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00951

outside

1  -  331

 

 

Pi

6.118332

Theta

6.401791

Tajima's D

-0.125255

CLR

1.946029

CSRT

0.355582220888956

Interpretation

Uncertain