Gene

KWMTBOMO07522

Pre Gene Modal

BGIBMGA005893

Annotation

PREDICTED:_CUGBP_Elav-like_family_member_4_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr12(-):15421397-15431467      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.391 PlasmaMembrane   Reliability : 1.244

CDS

ATGCGAACGTTTAGCTGGCTCTGTATTACGCTCTCAGCTTTAGGTGCATCTTCAAGTCTGGTAGTGAAGTTCGCGGACACCGAGAAGGAACGACAGCTCCGACGTATGCAACAGATGGCAGGCAACATGGGCCTCTTGAATCCGTTCGTCTTCAACCAGTTCGGGACATACAACACTTACGCACAAGTCATCACTGAACAGCAACAAGCAGCGCTGATGGTGGCCGCGACGGCTCAAGGCTACATCAACCCTATGTCTGCGATCGCATCACACGCCCTCAACGGAATGACTAACTCTGTTGTACCGCCAACATCCGATAACTTTTCTGGTCTGGCGATAGGCACCGGTCAGCCTCTCAATGGTGCTCTACCATCTCTGCCGTCTCCTACTATGCCGGGCTTCAACATGGCTGCTCAGACTCCCAATGGACAACCACAGCCCCAAGAAGCGGTCTACACTAATGGCATTCACCAAACATTCACCGGACCCGTGCAGGTAACTCAAGGTCTACCCAACGGCGAGGCCGCAGCCCTGCAGCACGCGTACGGAGGGGGAATGCAGCCCTTCCCTGGCGTAGCTTACCCAGCGGTATATGGGCAGTTCCCACAGCCCATTCCACCACCGTTGTCCACCATTGCACCGGCCCAGCGAGAAGAATTTCTGATGTTCCCAGGCTGCTCCATTTCCGGCCCTGAGGGCTGTAACCTCTTCATTTACCACCTGCCCCAGGAATTTGGAGATGCCGAGCTCATGCAGATGTTTCTTCCCTTCGGCAACGTGATCAGCAGCAAAGTCTTTATCGATCGTGCCACTAACCAAAGTTTCGTGTCGTTCGATAACCCGGCGTCGGCGCAAGCTGCGATCCAAGCCATGAACGGCTTCCAGATCGGCATGAAGCGACTGAAGGTCCAGCTCAAACGGCCGAAGGACGCCAATCGGCCCTATTAA

Protein

MRTFSWLCITLSALGASSSLVVKFADTEKERQLRRMQQMAGNMGLLNPFVFNQFGTYNTYAQVITEQQQAALMVAATAQGYINPMSAIASHALNGMTNSVVPPTSDNFSGLAIGTGQPLNGALPSLPSPTMPGFNMAAQTPNGQPQPQEAVYTNGIHQTFTGPVQVTQGLPNGEAAALQHAYGGGMQPFPGVAYPAVYGQFPQPIPPPLSTIAPAQREEFLMFPGCSISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY

Uniprot

A0A2A4J7Z9   A0A3S2M2C3   A0A2H1VFP5   A0A2A4J721   H9J8Q1   A0A194PV61   + More
A0A212FBK0   A0A139WAW6   A0A139WB31   A0A0N1PGB3   A0A139WAW4   A0A1Y1L3S4   A0A1B6CN79   A0A1B6CU29   A0A1B6CX00   A0A1B6CYQ9   A0A0M9AAP6   A0A1B6DK86   A0A1B6E8C2   A0A2C9GQ67   A0A1B6DKL5   A0A1B6DW12   U5EPM1   A0A1B6E1N2   A0A1B6C5D8   A0A3L8DKY3   A0A1B6D8E4   A0A1B6C710   A0A0L7R4D9   V9IDC0   A0A088AVG9   A0A1S4GML9   Q7PPI2   A0A2A3EJS5   Q17E15   Q16HG5   A0A084WE23   A0A336MCH9   A0A0K8V2P4   A0A1W4VIU8   A0A0J9RV49   A0A0R1E2H8   A0A0Q5U4K4   A0A154P4I7   A0A1W4V738   A0A1W4VIT8   A0A0J9UKM3   A0A0Q5UIV4   A0A1W4VJF3   A0A0J9RW52   A0A0R1E2N5   A0A0Q5UB24   A0A1W4VK77   A0A0R1E2P1   A0A0Q5UJ32   A0A0Q9WTM2   A0A0J9RUV1   A0A0R1DXS7   A0A0Q5UJB6   A0A0Q9XBY1   A0A0J9RUU3   A0A0R1DXM1   A0A0Q5U4T6   A0A0Q9XL53   A0A0Q9WJB5   A0A0Q9XNT7   A0A0Q9WJS1   A0A0Q9XBX6   A0A0J9RUU7   M9MS36   A0A0R1DXH9   A0A0Q5U6V6   A0A0J9RW45   A0A1W4WMP7   A0A0J9RV36   A0A0Q9XM96   A0A0Q9WVI4   A0A0Q9XNR2   A0A0Q9WVM0   A0A0Q9XL39   B4LGT9   B4L124   B4IXL1   A0A0Q9XC25   A0A158NMS5   W5JV15   A0A158NMS4   A0A1W4V6Q1   A0A0P9AMP9   A0A0N8P163   A0A1W4VJG6   A0A0P9C5V7   A0A0P8YJA3   A0A1W4VK91   A0A0P8XWE5   A0A1W4VK82   A0A0P8XWH6   A0A1W4V6N6   B3MAP2   A0A0J9RUM3  

Pubmed

19121390    26354079    22118469    18362917    19820115    28004739    + More
30249741    12364791    17510324    24438588    22936249    17994087    17550304    18057021    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    21347285    20920257    23761445   

EMBL

NWSH01002597    PCG67886.1    RSAL01000060    RVE49635.1    ODYU01002114    SOQ39202.1    + More
PCG67885.1    BABH01030357    KQ459592    KPI96878.1    AGBW02009309    OWR51109.1    KQ971379    KYB25052.1    KYB25051.1    KQ460954    KPJ10261.1    KYB25053.1    GEZM01067693    JAV67441.1    GEDC01022503    JAS14795.1    GEDC01020292    JAS17006.1    GEDC01019575    JAS17723.1    GEDC01018905    JAS18393.1    KQ435698    KOX80657.1    GEDC01011233    JAS26065.1    GEDC01003125    JAS34173.1    APCN01004645    APCN01004646    GEDC01011138    JAS26160.1    GEDC01007448    JAS29850.1    GANO01003665    JAB56206.1    GEDC01005501    JAS31797.1    GEDC01028684    JAS08614.1    QOIP01000007    RLU21077.1    GEDC01015378    JAS21920.1    GEDC01028179    JAS09119.1    KQ414657    KOC65750.1    JR039326    AEY58642.1    AAAB01008948    EAA10371.5    KZ288240    PBC31291.1    CH477288    EAT44684.1    CH478174    EAT33691.1    ATLV01023117    ATLV01023118    KE525340    KFB48467.1    UFQS01000763    UFQT01000763    SSX06705.1    SSX27051.1    GDHF01019130    JAI33184.1    CM002912    KMY99457.1    CM000159    KRK01826.1    CH954178    KQS43909.1    KQ434810    KZC06742.1    KMY99455.1    KQS43910.1    KMY99454.1    KRK01818.1    KQS43901.1    KRK01828.1    KQS43914.1    CH940647    KRF84977.1    KRF84984.1    KMY99458.1    KRK01817.1    KQS43904.1    KQS43919.1    CH933809    KRG06054.1    KMY99448.1    KRK01820.1    KRK01829.1    KQS43899.1    KRG06052.1    KRF84988.1    KRG06055.1    KRF84985.1    KRG06027.1    KMY99453.1    AE014296    ADV37531.1    KRK01814.1    KQS43900.1    KMY99440.1    KMY99444.1    KMY99442.1    KMY99450.1    KRG06030.1    KRF84980.1    KRG06023.1    KRF84990.1    KRG06036.1    EDW70554.1    EDW18181.2    CH916366    EDV97473.1    KRG06028.1    ADTU01020719    ADTU01020720    ADTU01020721    ADTU01020722    ADTU01020723    ADTU01020724    ADMH02000375    ETN66795.1    CH902618    KPU79051.1    KPU79044.1    KPU79047.1    KPU79055.1    KPU79043.1    KPU79050.1    EDV41329.1    KPU79041.1    KMY99461.1   

Proteomes

UP000218220    UP000283053    UP000005204    UP000053268    UP000007151    UP000007266    + More
UP000053240    UP000053105    UP000075840    UP000279307    UP000053825    UP000005203    UP000007062    UP000242457    UP000008820    UP000030765    UP000192221    UP000002282    UP000008711    UP000076502    UP000008792    UP000009192    UP000000803    UP000192223    UP000001070    UP000005205    UP000000673    UP000007801   

PRIDE

H9J8Q1   

Pfam

PF00076   RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

ProteinModelPortal

A0A2A4J7Z9   A0A3S2M2C3   A0A2H1VFP5   A0A2A4J721   H9J8Q1   A0A194PV61   + More
A0A212FBK0   A0A139WAW6   A0A139WB31   A0A0N1PGB3   A0A139WAW4   A0A1Y1L3S4   A0A1B6CN79   A0A1B6CU29   A0A1B6CX00   A0A1B6CYQ9   A0A0M9AAP6   A0A1B6DK86   A0A1B6E8C2   A0A2C9GQ67   A0A1B6DKL5   A0A1B6DW12   U5EPM1   A0A1B6E1N2   A0A1B6C5D8   A0A3L8DKY3   A0A1B6D8E4   A0A1B6C710   A0A0L7R4D9   V9IDC0   A0A088AVG9   A0A1S4GML9   Q7PPI2   A0A2A3EJS5   Q17E15   Q16HG5   A0A084WE23   A0A336MCH9   A0A0K8V2P4   A0A1W4VIU8   A0A0J9RV49   A0A0R1E2H8   A0A0Q5U4K4   A0A154P4I7   A0A1W4V738   A0A1W4VIT8   A0A0J9UKM3   A0A0Q5UIV4   A0A1W4VJF3   A0A0J9RW52   A0A0R1E2N5   A0A0Q5UB24   A0A1W4VK77   A0A0R1E2P1   A0A0Q5UJ32   A0A0Q9WTM2   A0A0J9RUV1   A0A0R1DXS7   A0A0Q5UJB6   A0A0Q9XBY1   A0A0J9RUU3   A0A0R1DXM1   A0A0Q5U4T6   A0A0Q9XL53   A0A0Q9WJB5   A0A0Q9XNT7   A0A0Q9WJS1   A0A0Q9XBX6   A0A0J9RUU7   M9MS36   A0A0R1DXH9   A0A0Q5U6V6   A0A0J9RW45   A0A1W4WMP7   A0A0J9RV36   A0A0Q9XM96   A0A0Q9WVI4   A0A0Q9XNR2   A0A0Q9WVM0   A0A0Q9XL39   B4LGT9   B4L124   B4IXL1   A0A0Q9XC25   A0A158NMS5   W5JV15   A0A158NMS4   A0A1W4V6Q1   A0A0P9AMP9   A0A0N8P163   A0A1W4VJG6   A0A0P9C5V7   A0A0P8YJA3   A0A1W4VK91   A0A0P8XWE5   A0A1W4VK82   A0A0P8XWH6   A0A1W4V6N6   B3MAP2   A0A0J9RUM3  

PDB

4TLQ     E-value=1.72669e-32,     Score=347

KEGG

101743724    K13207 CUG-BP- and ETR3-like factor | (RefSeq) CUGBP Elav-like family member 4

GO

GO:0003723   GO:0006376   GO:0000381   GO:0005737   GO:0005634   GO:1990904   GO:0003729   GO:0032991   GO:0042803   GO:0017148   GO:0000166   GO:0003676   GO:0000287   GO:0004012   GO:0005524   GO:0015914   GO:0016021   GO:0016020   GO:0003707   GO:0051537  

SignalP

Position:   1 - 18,         Likelihood:  0.960236

 

 

Length:

315

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.9727

Exp number, first 60 AAs:

4.47983

Total prob of N-in:

0.12477

outside

1  -  315

 

 

Pi

13.938833

Theta

17.428982

Tajima's D

-0.792958

CLR

1.943985

CSRT

0.181040947952602

Interpretation

Uncertain