SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07516  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005883
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_remodeling_and_spacing_factor_1-like_[Bombyx_mori]
Location
Bomo_Chr12(+):15337528-15362412      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.127
 

Sequence

CDS
ATGGCGTCTGACGGTGAAATTTTGTGTACGAATGATCCTAATTTTGCTGTTATTTATTCGTTTTTAAAAGTATTCGGAAAGTTGTACGGCTTAGTGGTGCCTAGTATAACTAAATTGCAGGATTACATCGAAGACACGCAGGAAGTCGCGGAACCGTTGAAAGATCTACATTTGAGACTGCTACGTCGCGCTCAAAAATCTGTTTTGAGCAGCAGATGGGAGAAGTGTCTGATAAAATTCTGTCACCAACAAAGACATCATCAAGAGGCGTGGGAAATCGAAAGATTCACATACAAGAAAGCTAGCACACAAGTAAAACTAAAAGTATTAAAGATATTACTAGAGTATCAATTCACATGTCACCTAAAATTCAAAACTGCAGTCAATGCAATATCCTGCAAGGAACTGCGCTTAGATCCAATAGGAAGAGACAAGAATGGCTGTGTGTATTGGTTGGAAGTTGACCATGAAGCAAACTTGTGTCTGTATAAAGAAGACCAGGATGAGGAGACATGGCAACTAGTGGCTAGGAACAGAGAAGAATTGGCCAATGTAATATCTAAATTAAAAGGAGGGGAAGATGTGTGTCCTTTGAATATATTGAATACACAAGAAGATTCTAGTAGCACCCCGGAAGCATCTCAACCTGAGAAAGAAAAGCCTGAATCCCATGAAGAAGAAAATGAGGAAGAGTTCCTCAGTCCAGAATCTGAAACAGATGCAGAAACGGATGATAAAAATGATGAAGAAGAAAATGATGAAAAATGTATAACAGAAGTAGAAAAAGATAAAACTGCAGAAGTAGAAAAAGATAAAACTACAGAAGTAGAAAAAGATAAAGGTACAGAAGTAGAAAAAGATAAAAGTACAGAGGTAGAAACTTCAAAGAGCAATGAAGAATTTAGTATTGTAACAGAAGAAAATGTTGAGTCCACTAATGAAGAAGTTAACCAAGAACAGAAAGAAGAACCTACTCCCGAGGAACAATTTCGAGAAGTAAATGAGGCTCATCCTCCAGAAGAATCCTCAAATTCAGAAGAGTTTCCAAAGGAGACTGTAGATGATATTGTAGAAAAAGAACTTATAGAAAAATCTGAAAAAGAACAACAAGAAGATGATAGAAACCTAGAAAATAAAGAAGAAGTTGGAGAGACCATTGAAGAACCAGTTATGGTAATTACTGGTGAAGGTAACGGAGCAGATTGTGAAGGTTTATGTGAAGAACTCAAGTATTTTAGTGAAGAGGATTCGGATTATGATAAAATATATTCTGATATAGTTGACTGTATAGACAGACATAGTGATTTTGATAGCTCATACTTTTATGGAGATGAAATAGTAGAAGAATTTATGTATTTTTATGGGGAAGGTTCAGGTTTCGATAATTGCACTGGTAACCCTGAGGTCGAACATACTAACAGTGCAGAAGACAACACCGACATTGACGAAGATGCAGAAGAATGTGTTAACGGTGAACATGAAGATAATTCTAGTGATACTAAAATAAGTAAAGATGTAAATTTAAAAAGTTGTGTACCCTCATTGACTAACAGATCTCTGAAGAAACAATCTAATGATACCGCTGAAGTATTAAAATCTGACCCTAAGAAACATTGCATTAGAGATTTAGAAAAACCTGATATTTCTGATACAGTACCTAGTGAAAACAGTGCTAACACAAATATAAACGAAAATAATGATACTGAAAATGTTACTAAAGACAGCATTAAGAAAGTGAAAGGTAGAAATAAGTTTAAAAAGAAAGCTGGGCTTAGGAAATCAAGCATAAAAGAAAGTATAAGTTGTGTTCCTGAAACTGACAATGGACATGATGTTAAATCAAGTATCATTGAAAAGAGGAAAAACAGTGTGTCATCAGAAGATCAAGAGGGCAATACTGACAATGAACGGGACAAAAGTCCAGAAAAAGGGGAAAAAGCGGAAGACGATTTACCTACAAAAAAATTACGCTTAGAAATGACACCAGAAACTGATGGAAATATAACACATTCCAAGGAAAACGAATCGGATAGTATAAATAACAGTATAGAAAAAGACAGTATAAATTCTATAAGCCAGCGGAAGAAGATAAAAGCTATAAAAGGAAAATTTAAAAGGAAAATAAAAATTAAAAATAGCACTGTAAATAAATCTGAAGAGGATAGAAAGGTTAGTGATAAAAAGGGTAAATCATTAAAGAGATCGATCTTGGAAGCTACAATCAGTGATAAAGACAAAACAGAATCTCAGAGTGACAGTGATGAAGACATACCAGTTGCTAGTGGTAAAAGATTGAAGACGAAACCAAAAAAACTTATCAAATCTACGAGAAAGAAAGTAGAAGCGAAACTGTTGGAAAAACATTCTAGTGATGAATCAGATGAAGAAACTCTATACAGCTTAGCTGGCAAGAAATCGCCTCGTAAAATTGTTAAAAAGAAATTGAAAATTAAAGACAAACAGAAGGCCACCAAGTCCAAATCCCGTGGCGGTTCTGATGACGATGACGTGACTCCAGTGAGACAGTCCAGGCGCATAGCTCAGCAGAAGATCAAAGAAGAGGCAGAGAGAAGGCACCAAGAGGAGGTGGCATTGCGAGAACTCAAATTAATACACAAGAAGAAGAAGGAAGATGAAGACGAAGAGGAGTGGGTGGCGAGTGACGTCAGCAGCCCTCGTGTGAGACGCTGGTCGGGCTCCGCGTCCGACGAGCCCAGCCCCGACTCCGACTCTGATGAACCACTCTTCGACCAGCCCCCAGAAGAACCTGACTTGAATTTCGACAAATCTGACCACGAGTTCTCACCTGAATCCGACTTGGAGAGCGGAGAACCCGTCGAACCCACGAAAAGGGCAAGGACGTTACAAGAAGGTCAAGACGAAGGGTTCTGCAAGCGGTGCGGCAGCGGGGAGCAGCCCGAGTGGATCCTGCTGTGCGACCGCTGCGACGCCGGCTACCACGCCAGCTGCCTCAAGCCCATGCTGTTCGTGGTGCCCGAGGGAGACTGGTTCTGTCCTCAGTGCAACCACGAAAAACTAATAGAATCATTAGAACTTGAATTAGTGAAGTACGATGAACTGATGGTACTAGTCGAAGAGGAAAGGGCCAGAAAGAAGGCGGAACTGAAAGAGAAAGCGGTAGCGGACGCTGAAGCGGGAGCGGTCCGCGAGTCCGACAAGCGGCCGGACAAGCGGGACCAGGACTCGGAGTCGGAGGAGAGCAGCAGCAGCTGGTCGTCGTCGTCGTCGGGCGCCGTGTACCGGCTGCGGGCGCGCCGCCAGCTGCCCGTCAGCTACCGGAGTCAGGAGTACGACAGGCTCATCTCCACTGCCATTAAGGAGGAGTACGTGGAGCCGACCACGAGCGCCGGGAACCAGGGTCGGGGGAAGGACATCTCCACCATCATCGAAGCTGCCGAGGAAGAGAAGCTGAAGGCAGAGCGCGAGGCTGTGGAGCAGGGTAAACCTTTAGAATCGAAGAAGATGAAGAGGAAACAGCGCCGCAAGCCGAGGAAGCTGAACTCGCTCGACGTGCCCTCGGAGGACGACGACGAAACCGACGAAGACTTCAAAGATGTCGGCATGGAATCCTCGTCAGAAGAGATATCGTCGTCGGCTGAGAGGGAGTCGACCGAATCTCGTTCGTCGGACTCACTGCCGATCAGAAGAACCGGTAGAACTGATAAGAAAGAACGTCCGAAACTGGTGGAGTCTTCTCCCGAAGTGAAGAAGAAGAAGAAGGGAGTGTTCACGGACAGCTCCAGTGAGGCCGCCGAGCACAAGGAGTGGAAGGCTAAGAAAAAATCGAAAGAGAAGCGTCGCGACCGTTCCAAGGGCGGCAAGAGTCGCAAGCGGCGCGGCAGCGGCGGGCGGGGCTCGGCGCGCGTGCTGTACGGCGGCCTGTCCGACCACGAGCCGGGCGCGCCCGCCGCACGCACGCGGCACCGCAAGATCGACTACACAGAGATGCCCAACACAGAGTCCGAGGAGGAGATGCACAAGTCGAGCGGCAAGCACATGCCGGACAGCTCGGACGAGTTCAAGCTGGAGGACTCGGAGGCGTCGTCGGACTCCGGGGACGACTCCCGCAAGCAGAGGGCGCTGGCCGACCTCATCCACAAGACCGCCGTCGTGCCCATCGAGAAGCTGCCCGACCACGTCGCCAAGGCCAAGGCCGAGGAGCTACAGAACCACCTCAGTGAGTTGCTACTGTTGCGATGTTGCGAGCGACACTAG
Protein
MASDGEILCTNDPNFAVIYSFLKVFGKLYGLVVPSITKLQDYIEDTQEVAEPLKDLHLRLLRRAQKSVLSSRWEKCLIKFCHQQRHHQEAWEIERFTYKKASTQVKLKVLKILLEYQFTCHLKFKTAVNAISCKELRLDPIGRDKNGCVYWLEVDHEANLCLYKEDQDEETWQLVARNREELANVISKLKGGEDVCPLNILNTQEDSSSTPEASQPEKEKPESHEEENEEEFLSPESETDAETDDKNDEEENDEKCITEVEKDKTAEVEKDKTTEVEKDKGTEVEKDKSTEVETSKSNEEFSIVTEENVESTNEEVNQEQKEEPTPEEQFREVNEAHPPEESSNSEEFPKETVDDIVEKELIEKSEKEQQEDDRNLENKEEVGETIEEPVMVITGEGNGADCEGLCEELKYFSEEDSDYDKIYSDIVDCIDRHSDFDSSYFYGDEIVEEFMYFYGEGSGFDNCTGNPEVEHTNSAEDNTDIDEDAEECVNGEHEDNSSDTKISKDVNLKSCVPSLTNRSLKKQSNDTAEVLKSDPKKHCIRDLEKPDISDTVPSENSANTNINENNDTENVTKDSIKKVKGRNKFKKKAGLRKSSIKESISCVPETDNGHDVKSSIIEKRKNSVSSEDQEGNTDNERDKSPEKGEKAEDDLPTKKLRLEMTPETDGNITHSKENESDSINNSIEKDSINSISQRKKIKAIKGKFKRKIKIKNSTVNKSEEDRKVSDKKGKSLKRSILEATISDKDKTESQSDSDEDIPVASGKRLKTKPKKLIKSTRKKVEAKLLEKHSSDESDEETLYSLAGKKSPRKIVKKKLKIKDKQKATKSKSRGGSDDDDVTPVRQSRRIAQQKIKEEAERRHQEEVALRELKLIHKKKKEDEDEEEWVASDVSSPRVRRWSGSASDEPSPDSDSDEPLFDQPPEEPDLNFDKSDHEFSPESDLESGEPVEPTKRARTLQEGQDEGFCKRCGSGEQPEWILLCDRCDAGYHASCLKPMLFVVPEGDWFCPQCNHEKLIESLELELVKYDELMVLVEEERARKKAELKEKAVADAEAGAVRESDKRPDKRDQDSESEESSSSWSSSSSGAVYRLRARRQLPVSYRSQEYDRLISTAIKEEYVEPTTSAGNQGRGKDISTIIEAAEEEKLKAEREAVEQGKPLESKKMKRKQRRKPRKLNSLDVPSEDDDETDEDFKDVGMESSSEEISSSAERESTESRSSDSLPIRRTGRTDKKERPKLVESSPEVKKKKKGVFTDSSSEAAEHKEWKAKKKSKEKRRDRSKGGKSRKRRGSGGRGSARVLYGGLSDHEPGAPAARTRHRKIDYTEMPNTESEEEMHKSSGKHMPDSSDEFKLEDSEASSDSGDDSRKQRALADLIHKTAVVPIEKLPDHVAKAKAEELQNHLSELLLLRCCERH

Summary

Uniprot
H9J8P1   A0A2H1VSG8   A0A194Q0D4   A0A212EYD7  
Pubmed
19121390    26354079    22118469   
EMBL
BABH01030364    BABH01030365    BABH01030366    BABH01030367    BABH01030368    ODYU01004162    + More
SOQ43738.1    KQ459592    KPI96875.1    AGBW02011576    OWR46471.1   
Proteomes
UP000005204    UP000053268    UP000007151   
PRIDE
H9J8P1   
Pfam
PF00628   PHD
Interpro
IPR011011   Znf_FYVE_PHD        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR019786   Zinc_finger_PHD-type_CS       
IPR028938   Rsf-1       
IPR018501   DDT_dom       
SUPFAM
SSF57903   SSF57903       
Gene 3D
3.30.40.10    
ProteinModelPortal
H9J8P1   A0A2H1VSG8   A0A194Q0D4   A0A212EYD7  
PDB
5VAB     E-value=6.06351e-13,     Score=185

Ontologies

KEGG
101744024    K11657 remodeling and spacing factor 1 | (RefSeq) remodeling and spacing factor 1-like
GO
GO:0006355   GO:0031213   GO:0046872   GO:0005515   GO:0008270   GO:0000287   GO:0004012   GO:0005524   GO:0015914   GO:0016021   GO:0016020   GO:0003707   GO:0051537  
PANTHER
PTHR10615:SF156  

Topology

Length:
1411
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.8715
Exp number, first 60 AAs:
0.86927
Total prob of N-in:
0.04071
outside
1  -  1411
 
 

Population Genetic Test Statistics

Pi
18.371977
Theta
18.590916
Tajima's D
-1.038101
CLR
1.306721
CSRT
0.135193240337983
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号