Gene

KWMTBOMO07509  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005897

Annotation

spermidine_synthase_[Antheraea_pernyi]

Location

Bomo_Chr12(-):15257809-15261677      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.701

CDS

ATGGACAAACTAAAAACCAACTGGTTTACGGAATCATGCGATATGTGGCCTGGGGGTACTTTCTCATTCGAAGTCAAAGAAGTACTGCACACAGAAAAATCAAAATACCAGAATATCCAAGTTTTTGATACAACCAGTTTGGGGAAGGTTCTTGTCTTGGACGGAATCATACAATGCACTCAGAAAGATGAGTTTTCTTATCAGGAAATGATATCATTTTTGCCTTTATGCTGCCACAAAAATCCAGAAAATGTACTCATAGTCGGTGGAGGTGATGGAGGTGTCGCAAGGGAAGTCGCCAAACATCCTCAAGTGAAACACATTGTTCTGGTTGAAATTGATGACCGCGTAATTGAGTTATCAAAAAGGTACCTCCCGTTCATGGCGGTCGGTTTCGATAGTCCTAAGTTAACTCTTCATGTGGGTGACGGTTTTGAATTTATGAAGAACCATAGACAAGAGTTTGACGTCATTATCACGGACAGTAGCGACCCAGTCGGACCGGCCGTAAATTTATTTCAAAAGAACTACTTCTCTCTGATGAAGAGCGCTTTGAAACCTGACGGCATAGTTTGTTCGCAAGCCGGAACAATCTGGAATGATATAGAGCTCGTAACGAATACGTTGAATTTCTGCAAGAATCAGTTTCCGGCGGCCGCTTATTGTTACACGTCCGTGCCTACGTATCCTTCCGGTCAGATCGGATTTGTGATAGGTTCTCTGACCAAAGACATCAAATTTAATGAACCTCAATTGACGTTTACTAGAGACGAAGAGGAAGCTATGAATTTGCGTTACTACAACAGCGAAGTTCATAGAGCAGCGTTCGCGTTGCCAACCTTTGTAAAATATAAACTGGCTTGA

Protein

MDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPENVLIVGGGDGGVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFDSPKLTLHVGDGFEFMKNHRQEFDVIITDSSDPVGPAVNLFQKNYFSLMKSALKPDGIVCSQAGTIWNDIELVTNTLNFCKNQFPAAAYCYTSVPTYPSGQIGFVIGSLTKDIKFNEPQLTFTRDEEEAMNLRYYNSEVHRAAFALPTFVKYKLA

Similarity

Belongs to the spermidine/spermine synthase family.

Uniprot

H9J8Q5   A0A2A4JI44   A0A3S2M2S4   W8FZB9   A0A0N1I7M9   A0A194PVT1   + More
A0A212EK56   A0A2H1VSA4   A0A0L7L374   A0A1L8E2E8   A0A1B0CZG0   A0A1B0CK51   A0A088AEL4   A0A0L7QND8   A0A1B6GPL0   A0A2A3E7C8   A0A1B6M2I6   A0A067RDN0   A0A232FCY9   A0A0N0BGG3   A0A2J7QU45   K7IPB6   A0A023ENM2   A0A1Y1KK86   B4MCA7   A0A084WM21   U5ETL6   B4PUS3   Q16TZ6   T1GJI1   A0A182J0E1   B3NZN4   B4JHQ5   A0A0B4RY59   A0A1Q3EYF3   A0A2P8Z9U7   B4NA06   A0A0K8TNJ8   A0A1W4VMF1   A0A0M4ECW3   A0A182YAZ6   B0W658   B4HJW5   B4K4E4   Q9VHA1   B3LZF6   Q86P04   A0A2S2R390   A0A2M4AN90   C4WS37   A0A023F7Z8   A0A182SJV3   W5JRD8   A0A2H8TH46   N6U3L1   U4U155   A0A182PJL8   Q7QHC4   A0A2C9GRD1   A0A182K3H4   A0A2M3ZIS1   A0A182LZL2   E0W1D9   A0A1W4XW13   A0A2R7W6V2   A0A2M4BVU3   A0A182FW28   T1DGE0   A0A2M4BVT7   A0A2S2NCE5   A0A158NL13   A0A2M4BW10   A0A336MFX1   K0GB66   A0A2M4BVY8   A0A195CMZ2   A0A2T7PTA8   A0A1A9ZXI8   X1WJ24   K1PFD5   K0GBF9   A0A1J1II65   A0A1A9XZD3   A0A182QTI0   W5MHH0   A0A240SXG2   A0A182X5Q5   A0A224XH52   Q297F0   A0A2D0SMX3   A0A195FEF7   A0A1A8SA32   A0A1A8QDI0   A0A1A8D6Y0   A0A1A8U2H8   A0A195B8E9   A0A210Q7V0   A0A0S7IGM2   A0A3P9PQK0   A0A1A8I2E2  

Pubmed

19121390    26354079    22118469    26227816    24845553    28648823    + More
20075255    24945155    28004739    17994087    24438588    17550304    17510324    25592131    29403074    26369729    25244985    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25474469    20920257    23761445    23537049    12364791    20566863    21347285    23019649    22992520    15632085    28812685   

EMBL

BABH01030372    NWSH01001496    PCG71082.1    RSAL01000060    RVE49643.1    KF955551    + More
AHK12775.1    KQ460954    KPJ10252.1    KQ459592    KPI96869.1    AGBW02014349    OWR41828.1    ODYU01004162    SOQ43733.1    JTDY01003254    KOB69870.1    GFDF01001174    JAV12910.1    AJVK01020756    AJVK01020757    AJWK01015752    AJWK01015753    KQ414864    KOC59996.1    GECZ01025563    GECZ01005401    GECZ01002926    JAS44206.1    JAS64368.1    JAS66843.1    KZ288358    PBC27079.1    GEBQ01009818    JAT30159.1    KK852531    KDR21877.1    NNAY01000447    OXU28319.1    KQ435782    KOX74762.1    NEVH01011190    PNF32099.1    GAPW01003062    JAC10536.1    GEZM01083774    JAV61018.1    CH940657    EDW63189.2    ATLV01024361    KE525351    KFB51265.1    GANO01002723    JAB57148.1    CM000160    EDW96690.1    CH477636    EAT37998.1    CAQQ02392735    CH954181    EDV49744.1    CH916369    EDV93894.1    KJ136119    AIZ03432.1    GFDL01014711    JAV20334.1    PYGN01000134    PSN53273.1    CH964232    EDW81761.1    GDAI01002108    JAI15495.1    CP012524    ALC40688.1    DS231847    EDS36405.1    CH480815    EDW42849.1    CH933806    EDW13896.1    AE014297    AAF54417.1    AFH06323.1    CH902617    EDV44135.1    BT003549    AAO39553.1    GGMS01015314    MBY84517.1    GGFK01008929    MBW42250.1    ABLF02031546    AK340032    BAH70707.1    GBBI01001332    JAC17380.1    ADMH02000398    ETN66701.1    GFXV01001556    MBW13361.1    APGK01041008    KB740986    ENN76160.1    KB631865    ERL86802.1    AAAB01008816    EAA05285.2    APCN01001475    GGFM01007695    MBW28446.1    AXCM01000854    DS235870    EEB19445.1    KK854384    PTY15329.1    GGFJ01008054    MBW57195.1    GAMD01002806    JAA98784.1    GGFJ01008055    MBW57196.1    GGMR01002196    MBY14815.1    ADTU01019137    ADTU01019138    GGFJ01008053    MBW57194.1    UFQS01000789    UFQT01000789    SSX06893.1    SSX27237.1    JX066807    JX066808    JX066809    JX066811    JX066812    JX066813    JX066814    JX066816    JX066817    JX066818    JX066819    JX066820    JX066821    JX066822    JX066823    JX066824    JX066827    JX066828    JX066829    JX066830    JX066831    JX066832    JX066833    JX066834    JX066835    JX066836    JX066837    JX066838    JX066839    JX066840    AFU24492.1    AFU24493.1    AFU24494.1    AFU24496.1    AFU24497.1    AFU24498.1    AFU24499.1    AFU24501.1    AFU24502.1    AFU24503.1    AFU24504.1    AFU24505.1    AFU24506.1    AFU24507.1    AFU24508.1    AFU24509.1    AFU24512.1    AFU24513.1    AFU24514.1    AFU24515.1    AFU24516.1    AFU24517.1    AFU24518.1    AFU24519.1    AFU24520.1    AFU24521.1    AFU24522.1    AFU24523.1    AFU24524.1    AFU24525.1    GGFJ01008052    MBW57193.1    KQ977532    KYN02111.1    PZQS01000002    PVD36662.1    ABLF02030952    ABLF02030956    ABLF02030959    JH816498    EKC22547.1    JX066810    JX066815    JX066825    JX066826    AFU24495.1    AFU24500.1    AFU24510.1    AFU24511.1    CVRI01000054    CRK99888.1    AXCN02001739    AHAT01009818    JXJN01015375    GFTR01004611    JAW11815.1    CM000070    EAL28255.2    KQ981656    KYN38587.1    HAEH01010976    HAEI01012334    SBS14803.1    HAEF01009543    HAEG01012073    SBR91398.1    HADZ01003523    HAEA01001392    SBQ29872.1    HADY01006254    HAEJ01001314    SBS41771.1    KQ976556    KYM80786.1    NEDP02004657    OWF44828.1    GBYX01429485    JAO51806.1    HAED01004981    SBQ91011.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000037510    UP000092462    UP000092461    UP000005203    UP000053825    UP000242457    UP000027135    UP000215335    UP000053105    UP000235965    UP000002358    UP000008792    UP000030765    UP000002282    UP000008820    UP000015102    UP000075880    UP000008711    UP000001070    UP000245037    UP000007798    UP000192221    UP000092553    UP000076408    UP000002320    UP000001292    UP000009192    UP000000803    UP000007801    UP000007819    UP000075901    UP000000673    UP000019118    UP000030742    UP000075885    UP000007062    UP000075840    UP000075881    UP000075883    UP000009046    UP000192223    UP000069272    UP000005205    UP000078542    UP000245119    UP000092445    UP000005408    UP000183832    UP000092443    UP000075886    UP000018468    UP000092460    UP000076407    UP000001819    UP000221080    UP000078541    UP000078540    UP000242188    UP000242638   

PRIDE

H9J8Q5    A0A088AEL4    Q9VHA1    Q86P04   

Pfam

PF17284   Spermine_synt_N        + More
PF00078   RVT_1
PF00248   Aldo_ket_red

Interpro

IPR030373   PABS_CS        + More
IPR037163   Spermidine_synt_N_sf       
IPR030374   PABS       
IPR001045   Spermi_synthase       
IPR029063   SAM-dependent_MTases       
IPR035246   Spermidine_synt_N       
IPR000477   RT_dom       
IPR030668   Spermi_synthase_euk       
IPR020471   Aldo/keto_reductase       
IPR036812   NADP_OxRdtase_dom_sf       
IPR023210   NADP_OxRdtase_dom       

SUPFAM

SSF53335   SSF53335        + More
SSF51430   SSF51430       

Gene 3D

2.30.140.10     3.20.20.100    

CDD

cd06660  Aldo_ket_red

ProteinModelPortal

H9J8Q5   A0A2A4JI44   A0A3S2M2S4   W8FZB9   A0A0N1I7M9   A0A194PVT1   + More
A0A212EK56   A0A2H1VSA4   A0A0L7L374   A0A1L8E2E8   A0A1B0CZG0   A0A1B0CK51   A0A088AEL4   A0A0L7QND8   A0A1B6GPL0   A0A2A3E7C8   A0A1B6M2I6   A0A067RDN0   A0A232FCY9   A0A0N0BGG3   A0A2J7QU45   K7IPB6   A0A023ENM2   A0A1Y1KK86   B4MCA7   A0A084WM21   U5ETL6   B4PUS3   Q16TZ6   T1GJI1   A0A182J0E1   B3NZN4   B4JHQ5   A0A0B4RY59   A0A1Q3EYF3   A0A2P8Z9U7   B4NA06   A0A0K8TNJ8   A0A1W4VMF1   A0A0M4ECW3   A0A182YAZ6   B0W658   B4HJW5   B4K4E4   Q9VHA1   B3LZF6   Q86P04   A0A2S2R390   A0A2M4AN90   C4WS37   A0A023F7Z8   A0A182SJV3   W5JRD8   A0A2H8TH46   N6U3L1   U4U155   A0A182PJL8   Q7QHC4   A0A2C9GRD1   A0A182K3H4   A0A2M3ZIS1   A0A182LZL2   E0W1D9   A0A1W4XW13   A0A2R7W6V2   A0A2M4BVU3   A0A182FW28   T1DGE0   A0A2M4BVT7   A0A2S2NCE5   A0A158NL13   A0A2M4BW10   A0A336MFX1   K0GB66   A0A2M4BVY8   A0A195CMZ2   A0A2T7PTA8   A0A1A9ZXI8   X1WJ24   K1PFD5   K0GBF9   A0A1J1II65   A0A1A9XZD3   A0A182QTI0   W5MHH0   A0A240SXG2   A0A182X5Q5   A0A224XH52   Q297F0   A0A2D0SMX3   A0A195FEF7   A0A1A8SA32   A0A1A8QDI0   A0A1A8D6Y0   A0A1A8U2H8   A0A195B8E9   A0A210Q7V0   A0A0S7IGM2   A0A3P9PQK0   A0A1A8I2E2  

PDB

3RW9     E-value=4.93212e-98,     Score=912

KEGG

101742094    K00797 spermidine synthase [EC:2.5.1.16] | (RefSeq) spermidine synthase

PATHWAY

00270    Cysteine and methionine metabolism - Bombyx mori (domestic silkworm)
00330    Arginine and proline metabolism - Bombyx mori (domestic silkworm)
00410    beta-Alanine metabolism - Bombyx mori (domestic silkworm)
00480    Glutathione metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0016740   GO:0006596   GO:0016021   GO:0004766   GO:0008295   GO:0016491   GO:0003824   GO:0016758   GO:0004553   GO:0042600   GO:0006811   GO:0005509   GO:0016042   GO:0016020   GO:0003707   GO:0051537  

Length:

287

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.17672

Exp number, first 60 AAs:

0.00163

Total prob of N-in:

0.08790

outside

1  -  287

 

 

Pi

2.943541

Theta

15.060301

Tajima's D

-2.168051

CLR

39.905339

CSRT

0.00579971001449927

Interpretation

Possibly Positive selection