Gene

KWMTBOMO07505

Annotation

PREDICTED:_longitudinals_lacking_protein-like_[Bombyx_mori]

Location

Bomo_Chr12(-):15224249-15229347      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.409

CDS

ATGGAATGTCCACACCTAGCTGTGTCGTGGGAATCGTATCGAAGTAGTATATGCAACGGATTGACCACACTCCAGCAGCGTGGCGAGTTTGTGGATATGACCCTTGCAGCTGATGGACATTTGGTGAAAGTACATCGCATGGTGCTATGCCTCGTTAGTCCATACATCAAGACCCTTATAGCCTCTGTAGATTGTCCACACCCAGTTATATTCCTTAATGATATATCATATGAGGTTTTACAAGCAATCTTACAGTATATTTACACTGGAGAGGTGATAGTCAGCAAGGAGAACTTTAAGTCATTCATGACAGCTGGGAGAGCACTCTGCATCAGAGGCTTGGACGATATGCCTGTAAATGAAGATACAGTAAAAGGAGACCAAATCAATATGAACGAATACAATAATGAAGTCAGTGAAAACCTGAATGTAGTAAAAGAATCTACAGGCACAGAATCTATGGATGATATGTTGATTAATACTGATGAGGGAATGCATGAACCAGAAGCTAATGATGGAACAAAGGAGCCAACACTTCAGTATAGTCTGTCGAACCACGGTAACTTACAACTGGTACTGAATAGATATGTTTACAACATGAAATACTATAGCCGCAAATCTGGTAATCGAAGTTGGAAATGCGTCGACGGTTCGGGGAAGGAACCACGCTGTCGTGCCTCAGTACTCACCAACAGTTCTAGGGTTGTCAGAAGAACCGGTTTACACAATCATCCGTTTCATGACAAGAAAATCATTAAGAAGATACAACGCGGCGGAACTTTTACAACTTTGAAAGCTGCTCAAACGGAAGTGCAATTACGACGGCACCAAACAAAGAATAAGCCAATGGATAACTTAAAATAA

Protein

MECPHLAVSWESYRSSICNGLTTLQQRGEFVDMTLAADGHLVKVHRMVLCLVSPYIKTLIASVDCPHPVIFLNDISYEVLQAILQYIYTGEVIVSKENFKSFMTAGRALCIRGLDDMPVNEDTVKGDQINMNEYNNEVSENLNVVKESTGTESMDDMLINTDEGMHEPEANDGTKEPTLQYSLSNHGNLQLVLNRYVYNMKYYSRKSGNRSWKCVDGSGKEPRCRASVLTNSSRVVRRTGLHNHPFHDKKIIKKIQRGGTFTTLKAAQTEVQLRRHQTKNKPMDNLK

Uniprot

A0A2A4JH22   A0A437BGS7   A0A1E1W6C7   A0A2A4JI35   J9QBN1   A0A2A4JGG4   + More
A0A437BGS2   A0A2H1VSC0   A0A0N1IEB4   A0A212EK14   A0A2H1VAN7   A0A1E1WN00   A0A2A4JG78   H9J8Q6   S4NN21   A0A2A4K9T4   A0A212EHW9   A0A437BYG5   A0A212EHU3   S4PLX9   H9J8N7   A0A1Y1K4D4   A0A151JSH8   A0A195F1L9  

Pubmed

26354079    22118469    19121390    23622113    28004739   

EMBL

NWSH01001496    PCG71076.1    RSAL01000060    RVE49646.1    GDQN01008516    JAT82538.1    + More
PCG71072.1    JN790614    AFD01656.1    PCG71071.1    RVE49644.1    ODYU01004162    SOQ43735.1    KQ460954    KPJ10251.1    AGBW02014349    OWR41829.1    ODYU01001544    SOQ37909.1    GDQN01002828    JAT88226.1    PCG71077.1    BABH01030375    GAIX01014126    JAA78434.1    NWSH01000030    PCG80543.1    AGBW02014789    OWR41074.1    RSAL01000001    RVE55109.1    OWR41073.1    GAIX01003810    JAA88750.1    BABH01030374    GEZM01095826    JAV55318.1    KQ978530    KYN30306.1    KQ981866    KYN34067.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000007151    UP000005204    UP000078492    + More
UP000078541   

PRIDE

H9J8Q6    H9J8N7   

Pfam

PF00651   BTB        + More
PF04500   FLYWCH

Interpro

IPR007588   Znf_FLYWCH        + More
IPR011333   SKP1/BTB/POZ_sf       
IPR000210   BTB/POZ_dom       

SUPFAM

SSF54695   SSF54695       

ProteinModelPortal

A0A2A4JH22   A0A437BGS7   A0A1E1W6C7   A0A2A4JI35   J9QBN1   A0A2A4JGG4   + More
A0A437BGS2   A0A2H1VSC0   A0A0N1IEB4   A0A212EK14   A0A2H1VAN7   A0A1E1WN00   A0A2A4JG78   H9J8Q6   S4NN21   A0A2A4K9T4   A0A212EHW9   A0A437BYG5   A0A212EHU3   S4PLX9   H9J8N7   A0A1Y1K4D4   A0A151JSH8   A0A195F1L9  

PDB

6N34     E-value=1.19564e-07,     Score=132

KEGG

101742635    no KO assigned | (RefSeq) longitudinals lacking protein-like

GO

GO:0005515   GO:0005673   GO:0004553   GO:0042600   GO:0006811   GO:0005509   GO:0016042   GO:0016020   GO:0003707   GO:0051537  

Length:

287

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03067

Exp number, first 60 AAs:

0.01376

Total prob of N-in:

0.01890

outside

1  -  287

 

 

Pi

15.47515

Theta

17.534238

Tajima's D

-0.445498

CLR

0.498085

CSRT

0.250537473126344

Interpretation

Uncertain