Gene

KWMTBOMO07499

Pre Gene Modal

BGIBMGA005900

Annotation

PREDICTED:_transmembrane_protein_50A_[Plutella_xylostella]

Location

Bomo_Chr12(-):15160899-15166408      View in EpiBrowser

Full name

Transmembrane protein 50A      

Alternative Name

Small membrane protein 1

Location in the cell

PlasmaMembrane   Reliability : 4.729

CDS

ATGAGTTGTTTCGAAAACATAAGCATGCCGAGCTGTGTTTGGTTCGAAAGCGGTGAGAAACGAAACATTATGGCATCAATATTAGCGGGACTGCTGTTTTTCGCAGGATGGTGGTTTATAATTGATGCGGCTTCTGTATACCCAGGGGATCTGCCTAATGCAGCTCATGTATGTGGAGTGATGGCCACCCTGTCAATGATAATGGTCAATTCGGTGTCAAATGCACAGGTTCGTGGAGAAACATACACAGGTGGTTGCATGGGACCGCGTGGTGCCAGACTTTGGCTCTTCCTTGGATTCGTTGTTGGTTTTGCGTCCCTCATTGCTGCCTGCTGGATACTCTTTGCGAACTATGTTAATGCTAGTTCCTCCAAACACGCCTGGCCTGGAGTGGGTTTGTTCATGCAAAATGCCTTCATTTTCGCTGGATCTCTCGTGTTTAAGTTCGGACGCACTGAGGATCTTTGGTCTTAA

Protein

MSCFENISMPSCVWFESGEKRNIMASILAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVSNAQVRGETYTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQNAFIFAGSLVFKFGRTEDLWS

Similarity

Belongs to the UPF0220 family.

Keywords

Acetylation   Complete proteome   Membrane   Phosphoprotein   Polymorphism   Reference proteome   Transmembrane   Transmembrane helix  

Feature

chain  Transmembrane protein 50A
sequence variant  In dbSNP:rs3093647.

Uniprot

H9J8Q8   A0A2A4JJL7   S4PEQ2   A0A0N0PBE5   A0A194Q0C5   A0A212FM12   + More
A0A1E1W5N5   A0A3S2PF45   A0A195B3I1   A0A195EU99   A0A195E4U3   A0A195CLG2   A0A151X292   F4W488   A0A232EKS0   K7J8T3   E2A724   A0A026VXT9   A0A0C9RCS5   E2C857   A0A1B6KPN3   A0A1B6JHF1   D6WU96   A0A1W4X6E9   A0A154P621   A0A2J7PUK1   A0A067RV11   A0A0L7RIR9   A0A2R5L8Z7   A0A131YEU8   A0A131XGN1   L7M431   A0A023GE47   G3MMT2   A0A023FUN2   A0A1E1WZ95   A0A1E1XU38   A0A023FEN9   A0A224YQJ3   A0A293MRW9   A0A088ARD7   A0A0K8RHC1   A0A0T6BAR6   A0A293MUA5   R7V6U7   C4WSS7   A0A2S2PBY6   A0A0M9A8T5   A0A0P4VYF9   R4FLR8   A0A087UUJ8   R4WJA6   A0A2S2QN70   A0A0V0G5H2   A0A0A9XG32   A0A069DPH9   J3JWQ5   A0A2H8TMF5   A0A1S3JCM5   Q4V7Y9   A0A0C9QY90   A0A210Q9X9   C3XVY6   A4QNG8   H2XWZ6   B7PV12   H3B7L8   K1QBS9   A0A2K6BA44   G1RCU3   A0A2K6ADN2   A0A0D9S869   A0A2R8Z9Y8   A0A096NDW0   A0A2K6QEV2   Q5RA11   G7NVW8   G3R938   F7FZH5   H2PYC6   Q7RU07   O95807   A0A1U7UR85   V8P1X2   A0A2H6MYP0   U3EQC6   B2R6I5   K7AN67   A0A3Q7MWQ1   A0A2U3Y070   A0A2U3VJ86   A0A0B8RVS3   A0A2Y9GJH2   A0A091ITS6   I3LRC6   A0A147ABD2   A0A383ZUG0   A0A3B3DIG3  

Pubmed

19121390    23622113    26354079    22118469    21719571    28648823    + More
20075255    20798317    24508170    30249741    18362917    19820115    24845553    26830274    28049606    25576852    22216098    28503490    29209593    28797301    23254933    27129103    23691247    25401762    26823975    26334808    22516182    23537049    27762356    26131772    28812685    18563158    20431018    12481130    15114417    9215903    22992520    22722832    25362486    22002653    22398555    17431167    25319552    26872772    10845894    11181995    11902138    15489334    11230166    12975309    22223895    22814378    23186163    25489052    24297900    23915248    25476704    29451363   

EMBL

BABH01030387    BABH01030388    BABH01030389    NWSH01001195    PCG72161.1    GAIX01004387    + More
JAA88173.1    KQ460954    KPJ10248.1    KQ459592    KPI96865.1    AGBW02007661    OWR54788.1    GDQN01008768    JAT82286.1    RSAL01000060    RVE49649.1    KQ976625    KYM79046.1    KQ981979    KYN31454.1    KQ979609    KYN20183.1    KQ977642    KYN00924.1    KQ982585    KYQ54314.1    GL887491    EGI71084.1    NNAY01003720    OXU18959.1    GL437252    EFN70756.1    KK107796    QOIP01000013    EZA47659.1    RLU15575.1    GBYB01004706    JAG74473.1    GL453568    EFN75860.1    GEBQ01026582    JAT13395.1    GECU01009026    JAS98680.1    KQ971352    EFA06787.2    KQ434825    KZC07376.1    NEVH01021197    PNF19994.1    KK852450    KDR23699.1    KQ414584    KOC70636.1    GGLE01001836    MBY05962.1    GEDV01010703    JAP77854.1    GEFH01003323    JAP65258.1    GACK01006234    JAA58800.1    GBBM01003281    JAC32137.1    JO843183    AEO34800.1    GBBL01002166    JAC25154.1    GFAC01006848    JAT92340.1    GFAA01000637    JAU02798.1    GBBK01004535    JAC19947.1    GFPF01006883    MAA18029.1    GFWV01018814    MAA43542.1    GADI01003283    JAA70525.1    LJIG01002557    KRT84383.1    GFWV01018813    MAA43541.1    AMQN01000893    KB296703    ELU11495.1    ABLF02035340    AK340317    BAH70947.1    GGMR01013817    MBY26436.1    KQ435726    KOX78219.1    GDKW01001999    JAI54596.1    ACPB03001320    GAHY01002019    JAA75491.1    KK121690    KFM81037.1    AK417580    BAN20795.1    GGMS01009938    MBY79141.1    GECL01002830    JAP03294.1    GBHO01025836    GBRD01000576    GDHC01016104    GDHC01009771    JAG17768.1    JAG65245.1    JAQ02525.1    JAQ08858.1    GBGD01003298    JAC85591.1    APGK01045817    BT127673    KB741039    KB632188    AEE62635.1    ENN74538.1    ERL89801.1    GFXV01003500    MBW15305.1    BC097652    CM004469    AAH97652.1    OCT92207.1    GBZX01003025    JAG89715.1    NEDP02004470    OWF45543.1    GG666470    EEN67771.1    AAMC01059930    AAMC01059931    BC135647    AAI35648.1    ABJB010386769    ABJB010483717    ABJB011045964    DS796802    EEC10434.1    AFYH01052459    AFYH01052460    JH818030    EKC34287.1    ADFV01067138    ADFV01067139    ADFV01067140    AQIB01142085    AQIB01142086    AHZZ02015518    AHZZ02015519    AHZZ02015520    ABGA01231037    ABGA01231038    ABGA01231039    ABGA01231040    ABGA01231041    CR859215    NDHI03003565    CAH91399.1    PNJ20668.1    AQIA01005302    CM001276    EHH49662.1    CABD030001762    JSUE03000722    JSUE03000723    JU333738    JU473274    JV045508    CM001253    AFE77493.1    AFH30078.1    AFI35579.1    EHH14465.1    LC032056    LC032059    LC032060    GABF01000830    GABF01000829    GABF01000828    GABD01001275    GABD01001274    NBAG03001494    BAX25214.1    JAA21315.1    JAA31825.1    PNI10931.1    BC066908    AY071927    JX644905    JX644906    BN000065    CH471134    AAH66908.1    AAL61545.1    AGB55904.1    CAD29849.1    EAW95168.1    AF081282    AL136627    AY358650    AF458851    BC007341    AZIM01001007    ETE68489.1    IACI01011003    LAA20292.1    GAEP01001683    GBEW01001097    JAB53138.1    JAI09268.1    AK312588    BAG35482.1    GABC01002051    GABC01002050    JAA09288.1    GBSH01002855    JAG66172.1    KK500853    KFP10830.1    AEMK02000045    GCES01010479    JAR75844.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000283053    + More
UP000078540    UP000078541    UP000078492    UP000078542    UP000075809    UP000007755    UP000215335    UP000002358    UP000000311    UP000053097    UP000279307    UP000008237    UP000007266    UP000192223    UP000076502    UP000235965    UP000027135    UP000053825    UP000005203    UP000014760    UP000007819    UP000053105    UP000015103    UP000054359    UP000019118    UP000030742    UP000085678    UP000186698    UP000242188    UP000001554    UP000008143    UP000008144    UP000001555    UP000008672    UP000005408    UP000233120    UP000001073    UP000233140    UP000029965    UP000240080    UP000028761    UP000233200    UP000001595    UP000009130    UP000233100    UP000001519    UP000006718    UP000005640    UP000189704    UP000286641    UP000245341    UP000245340    UP000248481    UP000053119    UP000008227    UP000265000    UP000261681    UP000261560   

PRIDE

H9J8Q8    O95807    I3LRC6   

Pfam

PF05255   UPF0220

Interpro

IPR007919   UPF0220       

ProteinModelPortal

H9J8Q8   A0A2A4JJL7   S4PEQ2   A0A0N0PBE5   A0A194Q0C5   A0A212FM12   + More
A0A1E1W5N5   A0A3S2PF45   A0A195B3I1   A0A195EU99   A0A195E4U3   A0A195CLG2   A0A151X292   F4W488   A0A232EKS0   K7J8T3   E2A724   A0A026VXT9   A0A0C9RCS5   E2C857   A0A1B6KPN3   A0A1B6JHF1   D6WU96   A0A1W4X6E9   A0A154P621   A0A2J7PUK1   A0A067RV11   A0A0L7RIR9   A0A2R5L8Z7   A0A131YEU8   A0A131XGN1   L7M431   A0A023GE47   G3MMT2   A0A023FUN2   A0A1E1WZ95   A0A1E1XU38   A0A023FEN9   A0A224YQJ3   A0A293MRW9   A0A088ARD7   A0A0K8RHC1   A0A0T6BAR6   A0A293MUA5   R7V6U7   C4WSS7   A0A2S2PBY6   A0A0M9A8T5   A0A0P4VYF9   R4FLR8   A0A087UUJ8   R4WJA6   A0A2S2QN70   A0A0V0G5H2   A0A0A9XG32   A0A069DPH9   J3JWQ5   A0A2H8TMF5   A0A1S3JCM5   Q4V7Y9   A0A0C9QY90   A0A210Q9X9   C3XVY6   A4QNG8   H2XWZ6   B7PV12   H3B7L8   K1QBS9   A0A2K6BA44   G1RCU3   A0A2K6ADN2   A0A0D9S869   A0A2R8Z9Y8   A0A096NDW0   A0A2K6QEV2   Q5RA11   G7NVW8   G3R938   F7FZH5   H2PYC6   Q7RU07   O95807   A0A1U7UR85   V8P1X2   A0A2H6MYP0   U3EQC6   B2R6I5   K7AN67   A0A3Q7MWQ1   A0A2U3Y070   A0A2U3VJ86   A0A0B8RVS3   A0A2Y9GJH2   A0A091ITS6   I3LRC6   A0A147ABD2   A0A383ZUG0   A0A3B3DIG3  

KEGG

101743072    no KO assigned | (RefSeq) transmembrane protein 50A

GO

GO:0016021   GO:0005623   GO:0032511   GO:0043025   GO:0005783   GO:0097386   GO:0005737  

PANTHER

PTHR13180  

Subcellular location

Membrane  

Length:

157

Number of predicted TMHs:

4

Exp number of AAs in TMHs:

85.83698

Exp number, first 60 AAs:

28.8274

Total prob of N-in:

0.99733

POSSIBLE N-term signal

sequence

inside

1  -  21

TMhelix

22  -  41

outside

42  -  50

TMhelix

51  -  73

inside

74  -  93

TMhelix

94  -  116

outside

117  -  130

TMhelix

131  -  150

inside

151  -  157

 

 

Pi

13.589001

Theta

19.192036

Tajima's D

-1.198827

CLR

0.750943

CSRT

0.103594820258987

Interpretation

Uncertain