SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07498  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005876
Annotation
PREDICTED:_low_density_lipoprotein_receptor_isoform_X1_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 2.688
 

Sequence

CDS
ATGTGGACGTGCGCTGGTTTGCTCGCGTTGGCCACGTGCGCCGTCGCGATTACCCGGGACCAGTTCTACCCTTATGGGCCGGAGTTGGACCAGAGGTTGCCCAGGGGATCGGAAGTCCCATCGCCGGAAGTCACTCTGAACGTCCCTATCGTATTCTACGATGAAACCTACGAGACAGTTTTTGTGAACAACCACGGCGTGCTAACGTTCCGCGCAAATCTCCCTCAATTTATCAACACGGAATTCCCACTGCCATACCCAGCAATAGCGGCGTTCTACTCCAACGTCGACACCACCGACGAAGGAGCAATCTACTACAGAGAGACCAACGAATCTCACATCCTATCAAAGGCTGAAGAAAGCGTGCAGAACAACTTTCACGATTACTATGACTTCCGACCAACGAGTGTCTTCATAACAACTTGGCTGGACGTCACTTACACAAGCACTTTACACGACAGAAAGAACAGTTACCAAGTCGCTGTGATCAGTAATGGAACGGAAAGTTTTGTTGAGCTACTATATCCGGAGAGAGAGATCCAGTGGATTCAGAAAGAGACGGATGCACTGTCGCTGCCGGACGCTAAAGCCCAAGCTGGTTTCGTGGCGGAGGACGGCCGCGTCTTCACCCTTCGTGGCTCGGGCAGTCATCAAATCAGAAATATTATATCATGGACAAACACACACGAGCCTGGAAAATACGTCTTCCGTGTTGGCACTATACCTCGCGACTCAAACATCGCTGTTCCTGATGAATACAATGAGACCGAAATTGAAATTGCGGAAGAGTCCAAAACGTGCGCCCAGAGCGGTCCCAGCGTATGCCACATGCAAGCGAGATGCGTAGACTACCAGGCCGGCATCTGCTGTCAATGCAGCGAAGGATTCTACGGGAACGGAAAATCATGCATTAAAAACGACGTACCTCTGAGAGTACACGGAAAACTGAATGGAGTTCTGAATGACGTGCACCTAAATGATGTGGATATCCAGTCTTACGTTGTAGTTGCTGACGGGAGAGCTTACACGGCACTGTCTCTTACTCCACCAGTCCTCGGAAGCAGTTTGCAGTTGCTAAACATCATGGGCAGCGTAGTTGGCTGGCTGTTTGCGAAGCCATCTTCCACGGCCAAAAACGGATACCAATTAACAGGCTCGCTTTTCAACCACAGCGTTGACATTTGGTTCCCGAAAACCGGTGACAGGGTTACCGTAAACCAAGAATACTTAGGTCACGATGTTTTCGACCAAATAACTTTAGACGCTGATGTACGTGGCTCTGTGCCGGTTATTTTATCCGGAATCAAACTAGACATTGGAGACTTTGAAGAGCAATATACCATTGTCGAACCGGGACTTATTCGTTCCGATTCTAGTCGAACGTTCACAAATAAGATCACAGGAGAAACGTACGAACAAAGAGTGTCCCAGACCATCACCTATAGGGCGTGTCGATACGCGCCTCCCTCAGCCGATGACACAATTCCATCCACTCTTAAAGTCACCAAAAACTATTTAGGTTATGAAACGAAGAACAATATAGTAAGATACGGAACGAGCAACAAGATTGTACCGCTAGGCCAAGAAGATCCCTGTATCGAAGGTCGTAACACTTGCGGTTCGTACAGCACGTGTGTCGTCCAAGGTGATTCCTTTAGCTGCGTTTGTAATAAAGGATTTAACAAGATTTATGTTGACGATGTGCTGACCTGTGTCGACATTGATGAATGCGCAGCCGGAACACATAACTGCGATCCAAACGCTGACTGCAACAACGGGGAAGGAGACTTTCAATGTCGATGCAAAACTGGATTCATTGGCAACGGAATCGAATGTTCACCGTTGTCTATATCTCGATGCCAAAGTCTGAGTTGCGATGTGAACGCGGACTGTTTAGAGAACAATGGAGAAGAACCGATATGCGTGTGCAGACCCGGTTACACTGGTAACGGGCAACAGTGCTATGAAGTCGATGAGCGCGGATGTTACGAAGGCTCCGGCTGCACTGAAAGACCTCCAGAGACAACCACGGCGCCTAACTACGAATCGGAATATAACGAAACATTCGTGTTGCCTAACTGCGACTATTACGGCTGCACGTGCCCCCAAGGCTACTACAGTTTCAAAGATGAGAGAAACAACGATCTGTGTCGTGTTGATACAGGCGACGTGCCGACCCCTATCACCGATAACAATGACACTTCAATCAGGTGCGATAGCGACAGTGACTGCCCACCAAACGCTGCTTGTATAGCGGACCCACATCAATACTCAACGGATGCTGAGAGCGATCAGTTCCTCGGACACTGCGTTTGCCCTGAAGGCTACGTGGGCGATGGATACGAATGCATCGAGCAAACCGGAACCAGCTGCAATTGTGCAGCCAACGCTCATTGTACGGAAACGCCAACTGCGGAACTTCTATGCGTCTGCAATACCGGTTACCACGGAGACGGCTACGTCTGCCGTCCGAATTTCAGTTGTACAAACAACTCGGACTGTGAATACAACGCTGAATGCCGTCCCGATACTGCCACAAACGAATACACTTGTCAGTGCATCGAAGGATTTAAAAAGGACCAAAATGAAGCTTGCATCCCTGACGGTCAATTGTGTAATGGCGCGCTGTGTGCTGAGCACGCCTCGTGCTTGTACGATGCCACCATTGAAATCAGTTACTGCCATTGCGACGAGGGCTTTAACGGCGAAGGCATATCCCAATGCGTCCAGACCCCACTCTCGTGTGACCTAGTCAACGACTGCAGTCCGTACGCGAGCTGCGTGCCAGCTGATAATACTTACCAGTGCGTGTGCCAAGAGGGCTATCTGGGCGACGGCTACAACTGCAGTCAGGAAATCAACTGCAGAACTGATCCTTACATGTGCAGTCCTCACGCTTCGTGCATAAAGAACATTGAAGGTTACGAATGTGAATGCAATAATGCATACGAGGGTAACGGCACTTTCTGCGTTGCGAAACCTCAGCCGCCGGGTAACTTTTTAGTGACAAGTGATGGAACTTCAATCTACCGCGTCCCGTTCAAGTATTCACCGAGGGAGTTTGCAACTCCGATTAACAGCGGCATTTCCCAAGTGGCAGTTTCCGTGAGCGTCGATTGTTTCTCTGGAAAAATCTACTGGGGCGATGTTGTCAGCAATAACATCAAACGAGCTGGATACGACGGATCAGAATTTGAACAATTCCTGAACACTGGCATCATATCTCCGGAAGGTTTGGCAATAGACTGGTCGGCTAGAAACATATTTTGGACAGATTCTAAGAAGCTCACTATTGAAGTTGCCAATTTAGACACAAAAGTTAGAAAAGTCTTGTTCTCGGTACAGAACATTTCTAATCCGAGGGGCATCGCCGTACATCCTCAAAGAGGGAAAATCTTCTGGACTGACTGGAATCGAAGCAATCCTAAGATCGAGTGGGCGAACATGGACGGCACGGAAAGATCAGTCCTCCTCGGTAGCCCAGATGTGAAGCTTCCAAACTCTGTGGCCATCGACTGGTCGAGAGATCGAGTTTGCTTCGCGGACGCGGGCCTCCAGGTCATTAAGTGCATTGACCTACACAGTCGGCAAATCGAGACTATTGCGGAGAACTGCAGGTACCCCTTCGGCCTCGCCATCAACGGAGACAAATTGTACTGGAGCGATTGGAGAACATTGAAAATCGAAATCATAGACACAATAACCCAGGCGAGAGGGCAAATAGACATTCCAAGATCGACGATACGGTTATACGGTGTTGCCAACGCGCCGAGCGAGTGTCCCGGGGCTGCCAACGTTTGCTCGCAGAGAAACGGTAACTGCAACGCCGGACAGCTGTGCCTACCCAATGGAAGTGGGGGAAGGAGTTGTCTGAACGGTGACGCCAACTATTTACCTTAG
Protein
MWTCAGLLALATCAVAITRDQFYPYGPELDQRLPRGSEVPSPEVTLNVPIVFYDETYETVFVNNHGVLTFRANLPQFINTEFPLPYPAIAAFYSNVDTTDEGAIYYRETNESHILSKAEESVQNNFHDYYDFRPTSVFITTWLDVTYTSTLHDRKNSYQVAVISNGTESFVELLYPEREIQWIQKETDALSLPDAKAQAGFVAEDGRVFTLRGSGSHQIRNIISWTNTHEPGKYVFRVGTIPRDSNIAVPDEYNETEIEIAEESKTCAQSGPSVCHMQARCVDYQAGICCQCSEGFYGNGKSCIKNDVPLRVHGKLNGVLNDVHLNDVDIQSYVVVADGRAYTALSLTPPVLGSSLQLLNIMGSVVGWLFAKPSSTAKNGYQLTGSLFNHSVDIWFPKTGDRVTVNQEYLGHDVFDQITLDADVRGSVPVILSGIKLDIGDFEEQYTIVEPGLIRSDSSRTFTNKITGETYEQRVSQTITYRACRYAPPSADDTIPSTLKVTKNYLGYETKNNIVRYGTSNKIVPLGQEDPCIEGRNTCGSYSTCVVQGDSFSCVCNKGFNKIYVDDVLTCVDIDECAAGTHNCDPNADCNNGEGDFQCRCKTGFIGNGIECSPLSISRCQSLSCDVNADCLENNGEEPICVCRPGYTGNGQQCYEVDERGCYEGSGCTERPPETTTAPNYESEYNETFVLPNCDYYGCTCPQGYYSFKDERNNDLCRVDTGDVPTPITDNNDTSIRCDSDSDCPPNAACIADPHQYSTDAESDQFLGHCVCPEGYVGDGYECIEQTGTSCNCAANAHCTETPTAELLCVCNTGYHGDGYVCRPNFSCTNNSDCEYNAECRPDTATNEYTCQCIEGFKKDQNEACIPDGQLCNGALCAEHASCLYDATIEISYCHCDEGFNGEGISQCVQTPLSCDLVNDCSPYASCVPADNTYQCVCQEGYLGDGYNCSQEINCRTDPYMCSPHASCIKNIEGYECECNNAYEGNGTFCVAKPQPPGNFLVTSDGTSIYRVPFKYSPREFATPINSGISQVAVSVSVDCFSGKIYWGDVVSNNIKRAGYDGSEFEQFLNTGIISPEGLAIDWSARNIFWTDSKKLTIEVANLDTKVRKVLFSVQNISNPRGIAVHPQRGKIFWTDWNRSNPKIEWANMDGTERSVLLGSPDVKLPNSVAIDWSRDRVCFADAGLQVIKCIDLHSRQIETIAENCRYPFGLAINGDKLYWSDWRTLKIEIIDTITQARGQIDIPRSTIRLYGVANAPSECPGAANVCSQRNGNCNAGQLCLPNGSGGRSCLNGDANYLP

Summary

EMBL
BABH01030389    BABH01030390    GDQN01004251    JAT86803.1    AGBW02007661    OWR54787.1    + More
RSAL01000060    RVE49650.1    ODYU01001622    SOQ38106.1    JTDY01000943    KOB75340.1    KQ971338    EFA02368.1    NEVH01006721    PNF37315.1    KK852870    KDR14602.1    GEZM01043436    JAV79119.1    KK107063    EZA61094.1    GEZM01043435    JAV79120.1    LJIG01022752    KRT78905.1    QOIP01000005    RLU22252.1    KZ288231    PBC31553.1    ADTU01019501    ADTU01019502    ADTU01019503    ADTU01019504    KQ976662    KYM78327.1    GL448189    EFN85183.1    KQ761010    OAD58397.1    NNAY01001967    OXU22427.1    KQ414743    KOC61928.1    KQ978125    KYM96871.1    GBYB01006682    JAG76449.1    KQ435804    KOX73048.1    KQ434878    KZC09875.1    KQ983190    KYQ46808.1    KB632308    ERL91928.1    GL888404    EGI61609.1    GL444666    EFN60734.1    JH432201    GL732533    EFX84793.1    KQ981914    KYN33098.1    GEDC01014795    JAS22503.1    GDIP01107377    JAL96337.1    DS231880    EDS42551.1    GEDC01031066    JAS06232.1    GDIP01159814    JAJ63588.1    GDIP01130171    JAL73543.1    GDIP01224962    GDIP01206013    GDIP01047084    LRGB01000337    JAI98439.1    KZS19650.1    GDIP01058435    JAM45280.1    GDIQ01039199    JAN55538.1    GDIP01118074    JAL85640.1    GFDL01007747    JAV27298.1    GDIP01058434    JAM45281.1    GDIP01136476    JAL67238.1    GDIP01169211    JAJ54191.1    GDIP01107376    JAL96338.1    GDIP01168365    JAJ55037.1    GDIP01188513    JAJ34889.1    GDIP01188514    JAJ34888.1    GDIP01081128    JAM22587.1    GDIP01217712    JAJ05690.1    AXCM01002282    GDIP01224961    JAI98440.1    AXCN02000820    GDIQ01007467    JAN87270.1    APCN01002461    AAAB01008964    GDIQ01117130    JAL34596.1    GDIP01008721    JAM94994.1    GDIP01064795    JAM38920.1    ADMH02001591    ETN61938.1    GDIP01096381    JAM07334.1    GDIP01104723    JAL98991.1    GDIP01104722    JAL98992.1    EAA12454.4    ATLV01014417    KE524970    KFB38715.1    JXUM01010366    JXUM01010367    KQ560305    KXJ83140.1    CH477429    EAT41106.1    AJWK01005550    AJWK01005551    AJWK01005552    AJWK01005553    AJWK01005554    AJWK01005555    CVRI01000013    CRK89591.1    GEBQ01004486    JAT35491.1    GAMC01020427    GAMC01020426    JAB86129.1    ACPB03011058    GEBQ01004707    JAT35270.1    GBHO01027703    JAG15901.1    GDHC01020959    GDHC01010289    GDHC01007751    JAP97669.1    JAQ08340.1    JAQ10878.1    AJVK01005477    AJVK01005478    JXLN01012783    KPM08846.1    UFQT01000527    SSX25003.1    GBXI01012701    JAD01591.1    GAKP01021806    JAC37146.1    AMQN01013652    KB310369    ELT91752.1   
Pfam
PF06119   NIDO        + More
PF12947   EGF_3
PF07474   G2F
PF00058   Ldl_recept_b
PF07645   EGF_CA
PF00008   EGF
PF12661   hEGF
PF12068   PH_RBD
PF00566   RabGAP-TBC
PF15348   GEMIN8
PF12946   EGF_MSP1_1
Interpro
IPR000742   EGF-like_dom        + More
IPR011042   6-blade_b-propeller_TolB-like       
IPR018097   EGF_Ca-bd_CS       
IPR013032   EGF-like_CS       
IPR003886   NIDO_dom       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR024731   EGF_dom       
IPR000033   LDLR_classB_rpt       
IPR001881   EGF-like_Ca-bd_dom       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR006605   G2_nidogen/fibulin_G2F       
IPR009017   GFP       
IPR011992   EF-hand-dom_pair       
IPR000195   Rab-GTPase-TBC_dom       
IPR021935   SGSM1/2_RBD       
IPR035969   Rab-GTPase_TBC_sf       
IPR034754   GEMIN8       
IPR024730   MSP1_EGF_1       
SUPFAM
SSF57184   SSF57184        + More
SSF54511   SSF54511       
SSF47473   SSF47473       
SSF47923   SSF47923       
Gene 3D
PDB
1NPE     E-value=5.177e-44,     Score=453

Ontologies

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.942121
 
 
Length:
1299
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.18933
Exp number, first 60 AAs:
0.18542
Total prob of N-in:
0.00988
outside
1  -  1299
 
 

Population Genetic Test Statistics

Pi
3.402475
Theta
14.680084
Tajima's D
-1.33936
CLR
18.469653
CSRT
0.079746012699365
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
24402669 NSYIYCEEKK 100.00 4e-08
28467696 NTAQAAGSSNSMISITK 100.00 4e-08
26822097 SVIIGSPDVK 95.24 3e-07
26280517 IIPMPASIPGIR 95.24 3e-07
24402669 IYGQNNAIIVQFYNSYCGHCR 95.24 3e-07
28467696 IYGNNDHPHSQNYHWK 95.24 3e-07
28556443 NIISWTNTHEPGK 100.00 6e-06
28556443 LPNSVAIDWSR 100.00 6e-06
26280517 TASQVAAIDIGYKPGVGGAIQGGPR 100.00 0.002
24402669 TAYGDKYER 100.00 0.002
28467696 TCAIWDIETMQR 100.00 0.002
28556443 PQPPGNFLVTSDGTSIYR 100.00 0.002
28556443 AQAGFVAEDGR 100.00 0.002
28556443 VVYLLGADSGVVTR 100.00 0.002
28556443 ITGETYEQR 100.00 0.003
28556443 IEIIDTITQAR 100.00 0.003
28556443 VSQTITYR 100.00 0.004
28556443 VCFADAGLQVIK 100.00 0.004
26280517 SITQSNTITER 100.00 0.006
24402669 TDPCPVGYFNSDAR 100.00 0.006
28467696 TDPTYPAGFMDVVSIEK 100.00 0.006
26280517 IYVSSSIYSPWDK 100.00 0.006
26822097 ITGETYEQR 100.00 0.006
26280517 IGCPGDDAIEKEFIK 100.00 0.006
24402669 NIISVAYK 100.00 0.006
28467696 NIISVAYK 100.00 0.006
28556443 NIISWTNTHEPGK 100.00 0.006
28556443 LPNSVAIDWSR 100.00 0.006
28556443 AQAGFVAEDGR 100.00 0.006
26280517 TDAGCEEIVR 100.00 0.008
28467696 TFTFINSK 100.00 0.008
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